Wall clock time and date at job start Tue Mar 31 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.21267 * 119.99714 * 2 1 4 4 C 1.47044 * 119.99843 * 179.97438 * 2 1 3 5 5 C 1.40109 * 120.07134 * 0.02562 * 4 2 1 6 6 C 1.37859 * 120.16096 * 180.02562 * 5 4 2 7 7 C 1.38458 * 120.30896 * 0.02562 * 6 5 4 8 8 F 1.35098 * 119.93005 * 179.97438 * 7 6 5 9 9 C 1.40084 * 120.13948 * 359.97438 * 7 6 5 10 10 C 1.47901 * 120.08577 * 180.02562 * 9 7 6 11 11 C 1.40451 * 120.79015 * 310.00016 * 10 9 7 12 12 N 1.31584 * 119.08838 * 179.97438 * 11 10 9 13 13 C 1.33641 * 120.83214 * 0.02562 * 12 11 10 14 14 C 1.41071 * 119.13079 * 180.02562 * 13 12 11 15 15 H 1.07996 * 119.99986 * 359.97438 * 14 13 12 16 16 C 1.40136 * 120.00262 * 180.02562 * 14 13 12 17 17 N 1.30660 * 120.00035 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00132 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47395 * 59.99673 * 18 16 14 20 20 H 1.48507 * 109.47368 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47058 * 299.99488 * 18 16 14 22 22 N 1.33653 * 121.74402 * 359.97438 * 13 12 11 23 23 C 1.31579 * 120.82576 * 0.02562 * 22 13 12 24 24 C 1.39276 * 119.83154 * 0.27922 * 9 7 6 25 25 H 1.08998 * 109.47298 * 270.00169 * 1 2 3 26 26 H 1.09004 * 109.46603 * 30.00010 * 1 2 3 27 27 H 1.08998 * 109.46720 * 149.99752 * 1 2 3 28 28 H 1.07996 * 119.91870 * 359.97182 * 5 4 2 29 29 H 1.08000 * 119.83892 * 179.97438 * 6 5 4 30 30 H 1.07998 * 120.45325 * 0.25696 * 11 10 9 31 31 H 0.97000 * 120.00324 * 180.02562 * 17 16 14 32 32 H 1.08000 * 120.45606 * 180.02562 * 23 22 13 33 33 H 1.08001 * 120.14820 * 179.72791 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2423 -1.2735 0.0006 5 6 1.5432 -2.4877 0.0006 6 6 2.2306 -3.6827 0.0016 7 6 3.6151 -3.6923 0.0032 8 9 4.2810 -4.8678 0.0048 9 6 4.3270 -2.4858 0.0033 10 6 5.8059 -2.4975 0.0044 11 6 6.5180 -3.2784 0.9296 12 7 7.8334 -3.2641 0.9003 13 6 8.4906 -2.5193 0.0062 14 6 9.9013 -2.5313 0.0066 15 1 10.4359 -3.1367 0.7235 16 6 10.6089 -1.7568 -0.9225 17 7 9.9621 -1.0239 -1.7895 18 14 12.4768 -1.7722 -0.9215 19 1 12.9606 -3.1549 -1.1646 20 1 12.9798 -0.8766 -1.9940 21 1 12.9750 -1.2976 0.3944 22 7 7.8467 -1.7641 -0.8890 23 6 6.5318 -1.7282 -0.9196 24 6 3.6384 -1.2752 0.0075 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 0.4632 -2.4875 0.0006 29 1 1.6865 -4.6156 0.0021 30 1 5.9930 -3.8857 1.6520 31 1 10.4518 -0.4881 -2.4329 32 1 6.0176 -1.1161 -1.6458 33 1 4.1821 -0.3420 0.0120 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241300186.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:45 Heat of formation + Delta-G solvation = -35.982181 kcal Electronic energy + Delta-G solvation = -20971.964951 eV Core-core repulsion = 17490.296906 eV Total energy + Delta-G solvation = -3481.668046 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.90579 -41.15688 -40.64324 -38.91653 -35.92406 -34.14215 -33.76364 -32.26625 -31.26651 -29.96035 -27.89291 -25.09536 -24.60419 -24.09202 -22.83777 -20.64931 -19.89945 -18.71196 -18.11577 -17.55447 -17.42137 -17.04870 -16.46827 -16.27437 -15.93562 -15.81695 -15.66761 -14.98941 -14.79597 -14.55753 -14.19383 -13.95961 -13.84166 -13.26092 -13.17548 -13.08085 -12.94963 -12.86188 -12.76969 -12.20456 -12.01067 -11.42599 -11.26579 -11.18635 -10.78283 -10.50048 -9.89531 -9.55928 -9.21235 -8.54445 -6.84649 -0.48162 0.04083 0.69726 0.95077 1.35389 1.36940 1.51650 1.52231 2.14969 2.59175 2.71818 3.07657 3.26428 3.70490 3.76409 3.84572 3.86875 3.90543 4.13804 4.16100 4.27297 4.33629 4.60369 4.74693 4.82139 4.89658 4.96572 5.01523 5.07553 5.16909 5.19544 5.31529 5.44059 5.64814 5.84109 6.02349 6.38380 6.48201 6.56820 7.02823 8.07655 8.23748 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.025044 B = 0.004007 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.746806 B = 6985.915667 C = 7853.225120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.396 3.604 3 O -0.511 6.511 4 C -0.188 4.188 5 C -0.035 4.035 6 C -0.148 4.148 7 C 0.104 3.896 8 F -0.145 7.145 9 C -0.049 4.049 10 C -0.324 4.324 11 C 0.182 3.818 12 N -0.618 5.618 13 C 0.353 3.647 14 C -0.419 4.419 15 H 0.095 0.905 16 C 0.020 3.980 17 N -0.736 5.736 18 Si 1.005 2.995 19 H -0.255 1.255 20 H -0.260 1.260 21 H -0.256 1.256 22 N -0.538 5.538 23 C 0.167 3.833 24 C -0.054 4.054 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.195 0.805 29 H 0.176 0.824 30 H 0.153 0.847 31 H 0.289 0.711 32 H 0.145 0.855 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.339 -1.885 0.905 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.277 3.723 3 O -0.390 6.390 4 C -0.189 4.189 5 C -0.053 4.053 6 C -0.166 4.166 7 C 0.085 3.915 8 F -0.123 7.123 9 C -0.051 4.051 10 C -0.333 4.333 11 C 0.009 3.991 12 N -0.337 5.337 13 C 0.119 3.881 14 C -0.453 4.453 15 H 0.114 0.886 16 C -0.205 4.205 17 N -0.357 5.357 18 Si 0.823 3.177 19 H -0.179 1.179 20 H -0.183 1.183 21 H -0.180 1.180 22 N -0.254 5.254 23 C -0.008 4.008 24 C -0.072 4.072 25 H 0.138 0.862 26 H 0.108 0.892 27 H 0.139 0.861 28 H 0.212 0.788 29 H 0.194 0.806 30 H 0.170 0.830 31 H 0.100 0.900 32 H 0.163 0.837 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.827 -1.231 0.702 16.887 hybrid contribution 0.415 -0.118 -0.049 0.434 sum -16.412 -1.350 0.653 16.481 Atomic orbital electron populations 1.22288 0.89053 1.06700 1.06624 1.23207 0.93931 0.86225 0.68889 1.90562 1.73647 1.35842 1.38979 1.20746 0.93026 0.96900 1.08254 1.21752 1.02260 0.88284 0.92981 1.21397 0.90010 1.01905 1.03337 1.18542 0.91441 0.79865 1.01691 1.91473 1.81729 1.45598 1.93535 1.18536 0.91445 0.92464 1.02651 1.19796 0.93062 1.12844 1.07630 1.23047 0.90035 0.92104 0.93879 1.68650 1.09588 1.27189 1.28313 1.20375 0.95597 0.86663 0.85435 1.19797 0.88835 1.22287 1.14335 0.88648 1.27218 1.07255 0.92881 0.93138 1.70173 1.40258 1.14948 1.10332 0.84921 0.73169 0.79913 0.79669 1.17942 1.18343 1.17989 1.69313 1.07778 1.23206 1.25151 1.23387 0.90937 0.92501 0.93935 1.21364 0.94245 0.96284 0.95356 0.86162 0.89196 0.86112 0.78763 0.80638 0.82990 0.89993 0.83733 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 9.75 71.24 0.69 -1.12 16 2 C 0.40 8.78 7.22 28.00 0.20 8.98 16 3 O -0.51 -16.61 17.08 -2.99 -0.05 -16.67 16 4 C -0.19 -4.46 5.87 -20.18 -0.12 -4.58 16 5 C -0.04 -0.54 9.36 22.63 0.21 -0.33 16 6 C -0.15 -2.86 9.99 22.23 0.22 -2.64 16 7 C 0.10 3.18 7.20 22.77 0.16 3.34 16 8 F -0.14 -4.99 15.95 44.97 0.72 -4.27 16 9 C -0.05 -1.77 5.52 -20.02 -0.11 -1.88 16 10 C -0.32 -14.94 5.35 -19.64 -0.11 -15.04 16 11 C 0.18 8.90 10.19 85.27 0.87 9.77 16 12 N -0.62 -34.72 10.34 -193.17 -2.00 -36.72 16 13 C 0.35 21.04 7.35 134.90 0.99 22.03 16 14 C -0.42 -23.79 9.35 23.43 0.22 -23.57 16 15 H 0.10 5.18 7.85 -2.91 -0.02 5.15 16 16 C 0.02 1.02 5.50 85.33 0.47 1.49 16 17 N -0.74 -39.47 11.40 21.85 0.25 -39.22 16 18 Si 1.01 37.66 29.56 68.60 2.03 39.69 16 19 H -0.26 -9.24 7.11 99.48 0.71 -8.54 16 20 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 21 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 22 N -0.54 -31.38 7.83 -193.17 -1.51 -32.89 16 23 C 0.17 8.52 10.85 85.27 0.93 9.45 16 24 C -0.05 -1.78 9.10 22.85 0.21 -1.57 16 25 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.12 0.34 6.46 -2.39 -0.02 0.32 16 28 H 0.20 0.80 6.34 -2.91 -0.02 0.78 16 29 H 0.18 2.10 8.06 -2.91 -0.02 2.08 16 30 H 0.15 6.44 7.85 -2.91 -0.02 6.41 16 31 H 0.29 13.74 8.29 -92.71 -0.77 12.97 16 32 H 0.15 6.63 8.06 -2.91 -0.02 6.60 16 33 H 0.11 4.24 7.64 -2.91 -0.02 4.22 16 Total: -1.00 -76.50 302.88 5.44 -71.06 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 1.16 Total: 14.70 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 4.84 Total: 4.33 kcal Atomic # 7 Polarization: -105.57 SS G_CDS: -3.26 Total: -108.83 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.05 Total: -16.67 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.72 Total: -4.27 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.69 kcal Total: -76.50 5.44 -71.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241300186.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.074 kcal (2) G-P(sol) polarization free energy of solvation -76.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds