Wall clock time and date at job start Tue Mar 31 2020 05:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42096 * 109.47185 * 2 1 4 4 C 1.76201 * 103.00045 * 109.05463 * 2 1 3 5 5 C 1.37960 * 120.07482 * 93.82088 * 4 2 1 6 6 C 1.38370 * 120.14519 * 180.02562 * 5 4 2 7 7 C 1.38412 * 120.29081 * 359.97438 * 6 5 4 8 8 C 1.37918 * 120.14450 * 359.76273 * 7 6 5 9 9 C 1.39582 * 120.07248 * 273.84827 * 4 2 1 10 10 C 1.47989 * 120.14483 * 359.97438 * 9 4 2 11 11 C 1.39941 * 119.88092 * 66.69373 * 10 9 4 12 12 C 1.36243 * 120.12040 * 180.28128 * 11 10 9 13 13 C 1.40932 * 119.88200 * 359.49385 * 12 11 10 14 14 C 1.41023 * 120.12042 * 180.28046 * 13 12 11 15 15 H 1.08007 * 119.99618 * 207.83584 * 14 13 12 16 16 C 1.40007 * 120.00064 * 27.83385 * 14 13 12 17 17 N 1.30793 * 120.00543 * 12.08522 * 16 14 13 18 18 Si 1.86800 * 119.99881 * 192.08629 * 16 14 13 19 19 H 1.48493 * 109.47419 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47236 * 120.00112 * 18 16 14 21 21 H 1.48505 * 109.47267 * 239.99858 * 18 16 14 22 22 C 1.40939 * 119.75972 * 0.25929 * 13 12 11 23 23 C 1.36253 * 119.87550 * 359.97438 * 22 13 12 24 24 H 1.08997 * 109.47190 * 320.14025 * 1 2 3 25 25 H 1.09001 * 109.46997 * 80.14057 * 1 2 3 26 26 H 1.09000 * 109.47300 * 200.14449 * 1 2 3 27 27 H 1.07994 * 119.92883 * 0.02562 * 5 4 2 28 28 H 1.08000 * 119.85368 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.92647 * 180.02562 * 7 6 5 30 30 H 1.08000 * 120.07642 * 180.28212 * 8 7 6 31 31 H 1.08002 * 119.93761 * 0.03023 * 11 10 9 32 32 H 1.08007 * 120.05888 * 179.77646 * 12 11 10 33 33 H 0.96989 * 120.00986 * 180.02562 * 17 16 14 34 34 H 1.08000 * 120.05939 * 180.02562 * 22 13 12 35 35 H 1.07997 * 119.93492 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5605 1.6228 5 6 2.4434 -1.9005 1.8537 6 6 2.7543 -2.3423 3.1276 7 6 2.8341 -1.4444 4.1779 8 6 2.6087 -0.1014 3.9595 9 6 2.2887 0.3502 2.6776 10 6 2.0399 1.7891 2.4373 11 6 0.7612 2.2238 2.0709 12 6 0.5281 3.5467 1.8428 13 6 1.5749 4.4792 1.9868 14 6 1.3378 5.8503 1.7578 15 1 2.1424 6.4893 1.4249 16 6 0.0593 6.3833 1.9618 17 7 -0.8511 5.6796 2.5836 18 14 -0.3464 8.0995 1.3459 19 1 0.8470 8.6818 0.6811 20 1 -1.4675 8.0249 0.3748 21 1 -0.7411 8.9566 2.4926 22 6 2.8596 4.0365 2.3611 23 6 3.0829 2.7107 2.5821 24 1 -0.3633 0.7888 0.6586 25 1 -0.3633 0.1760 -1.0125 26 1 -0.3634 -0.9648 0.3539 27 1 2.3831 -2.6062 1.0384 28 1 2.9362 -3.3924 3.3029 29 1 3.0776 -1.7956 5.1697 30 1 2.6758 0.5989 4.7789 31 1 -0.0413 1.5089 1.9648 32 1 -0.4584 3.8806 1.5565 33 1 -1.7369 6.0486 2.7247 34 1 3.6652 4.7470 2.4733 35 1 4.0670 2.3704 2.8685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241338933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:35 Heat of formation + Delta-G solvation = 17.866972 kcal Electronic energy + Delta-G solvation = -19859.849531 eV Core-core repulsion = 16914.436985 eV Total energy + Delta-G solvation = -2945.412546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -38.90746 -37.15923 -34.98573 -33.71959 -31.44684 -30.78366 -29.60637 -28.56711 -28.22682 -25.14990 -22.47646 -22.20909 -20.72010 -20.01639 -17.53145 -17.29498 -16.25631 -15.41737 -15.21208 -14.89146 -14.29879 -14.20409 -13.92422 -13.52007 -13.33556 -13.11236 -12.61322 -12.41550 -12.15083 -11.96643 -11.75944 -11.52395 -11.22061 -11.09520 -11.03678 -10.85865 -10.51469 -10.34136 -9.68681 -9.50368 -9.30980 -9.12872 -8.82344 -8.39790 -7.89291 -7.39432 -7.03143 -6.68643 -4.28612 1.30649 1.68951 2.42695 2.80113 3.08630 3.15074 3.16483 3.22938 3.28271 3.96384 4.04518 4.54286 4.68345 5.12157 5.27085 5.34222 5.56499 5.60608 5.70419 5.80653 5.85851 6.10687 6.20524 6.33044 6.42888 6.54433 6.58509 6.71287 6.88647 7.00332 7.11751 7.28158 7.33252 7.43882 7.72672 7.96749 8.12644 8.13979 8.36372 8.70163 8.95167 9.06414 10.24525 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.025891 B = 0.005061 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.179931 B = 5530.745789 C = 5989.993918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.514 4.514 2 S 1.307 4.693 3 O -0.807 6.807 4 C -0.467 4.467 5 C -0.048 4.048 6 C -0.164 4.164 7 C -0.089 4.089 8 C -0.141 4.141 9 C 0.077 3.923 10 C -0.181 4.181 11 C -0.088 4.088 12 C -0.150 4.150 13 C 0.120 3.880 14 C -0.459 4.459 15 H 0.077 0.923 16 C 0.073 3.927 17 N -0.801 5.801 18 Si 0.910 3.090 19 H -0.260 1.260 20 H -0.273 1.273 21 H -0.275 1.275 22 C -0.219 4.219 23 C -0.054 4.054 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.127 0.873 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.278 0.722 34 H 0.090 0.910 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -15.149 -3.348 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.669 4.669 2 S 1.502 4.498 3 O -0.802 6.802 4 C -0.563 4.563 5 C -0.067 4.067 6 C -0.183 4.183 7 C -0.107 4.107 8 C -0.160 4.160 9 C 0.076 3.924 10 C -0.182 4.182 11 C -0.106 4.106 12 C -0.170 4.170 13 C 0.118 3.882 14 C -0.489 4.489 15 H 0.095 0.905 16 C -0.144 4.144 17 N -0.427 5.427 18 Si 0.735 3.265 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.200 1.200 22 C -0.239 4.239 23 C -0.072 4.072 24 H 0.117 0.883 25 H 0.117 0.883 26 H 0.116 0.884 27 H 0.145 0.855 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.138 0.862 31 H 0.101 0.899 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.604 -14.839 -3.989 15.585 hybrid contribution -1.174 1.904 1.683 2.799 sum 1.430 -12.935 -2.307 13.216 Atomic orbital electron populations 1.28135 1.23742 1.07608 1.07407 1.69303 0.86517 1.01619 0.92358 1.93392 1.71486 1.35293 1.80021 1.28033 1.12812 0.98997 1.16446 1.20676 0.95767 0.93556 0.96721 1.21110 1.04511 0.99116 0.93527 1.21173 0.97428 0.93511 0.98607 1.21539 1.01888 0.95399 0.97136 1.19040 0.88734 0.93322 0.91325 1.17869 0.95121 0.89154 1.16078 1.20378 0.93760 0.95948 1.00503 1.20885 1.00137 0.91215 1.04727 1.17616 0.90748 0.93136 0.86693 1.19618 0.95210 0.94376 1.39666 0.90472 1.25928 0.95809 0.99880 0.92740 1.69801 1.04639 1.37947 1.30316 0.86234 0.79350 0.81682 0.79265 1.18411 1.19781 1.19997 1.20631 0.97956 0.94365 1.10954 1.20001 0.95271 0.93120 0.98852 0.88277 0.88317 0.88432 0.85532 0.86467 0.86600 0.86190 0.89868 0.86552 0.91074 0.89164 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -7.16 10.49 101.05 1.06 -6.10 16 2 S 1.31 18.86 13.64 -107.50 -1.47 17.39 16 3 O -0.81 -17.79 14.09 -35.23 -0.50 -18.28 16 4 C -0.47 -7.55 5.61 -39.18 -0.22 -7.77 16 5 C -0.05 -0.60 9.74 -39.63 -0.39 -0.98 16 6 C -0.16 -2.04 10.04 -39.47 -0.40 -2.44 16 7 C -0.09 -1.26 10.03 -39.63 -0.40 -1.66 16 8 C -0.14 -2.49 9.75 -39.18 -0.38 -2.88 16 9 C 0.08 1.53 5.28 -104.88 -0.55 0.98 16 10 C -0.18 -4.33 3.10 -104.63 -0.32 -4.65 16 11 C -0.09 -2.21 7.11 -39.66 -0.28 -2.49 16 12 C -0.15 -4.21 8.60 -39.28 -0.34 -4.55 16 13 C 0.12 3.47 5.56 -106.80 -0.59 2.87 16 14 C -0.46 -12.95 9.04 -37.86 -0.34 -13.30 16 15 H 0.08 2.11 7.88 -52.48 -0.41 1.69 16 16 C 0.07 1.92 5.23 -17.33 -0.09 1.83 16 17 N -0.80 -21.66 10.83 55.55 0.60 -21.06 16 18 Si 0.91 19.56 29.58 -169.99 -5.03 14.53 16 19 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 C -0.22 -5.94 9.73 -39.27 -0.38 -6.32 16 23 C -0.05 -1.36 9.53 -39.66 -0.38 -1.74 16 24 H 0.10 1.77 4.49 -51.93 -0.23 1.54 16 25 H 0.10 1.19 8.14 -51.92 -0.42 0.76 16 26 H 0.10 1.08 8.14 -51.92 -0.42 0.66 16 27 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 28 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.08 1.93 5.38 -52.49 -0.28 1.65 16 32 H 0.12 3.34 6.18 -52.48 -0.32 3.02 16 33 H 0.28 6.82 8.29 -40.82 -0.34 6.48 16 34 H 0.09 2.30 8.06 -52.49 -0.42 1.87 16 35 H 0.08 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 305.16 15.07 4.60 4.60 Total: -1.00 -35.32 305.16 -9.57 -44.89 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.77 Total: 7.12 kcal Atomic # 6 Polarization: -45.18 SS G_CDS: -4.01 Total: -49.19 kcal Atomic # 7 Polarization: -21.66 SS G_CDS: 0.60 Total: -21.06 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.50 Total: -18.28 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Atomic # 16 Polarization: 18.86 SS G_CDS: -1.47 Total: 17.39 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -35.32 -9.57 -44.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241338933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.759 kcal (2) G-P(sol) polarization free energy of solvation -35.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds