Wall clock time and date at job start Tue Mar 31 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42096 * 109.47185 * 2 1 4 4 C 1.76201 * 103.00045 * 109.05463 * 2 1 3 5 5 C 1.37960 * 120.07482 * 93.82088 * 4 2 1 6 6 C 1.38370 * 120.14519 * 180.02562 * 5 4 2 7 7 C 1.38412 * 120.29081 * 359.97438 * 6 5 4 8 8 C 1.37918 * 120.14450 * 359.76273 * 7 6 5 9 9 C 1.39582 * 120.07248 * 273.84827 * 4 2 1 10 10 C 1.47989 * 120.14483 * 359.97438 * 9 4 2 11 11 C 1.39941 * 119.88092 * 66.69373 * 10 9 4 12 12 C 1.36243 * 120.12040 * 180.28128 * 11 10 9 13 13 C 1.40932 * 119.88200 * 359.49385 * 12 11 10 14 14 C 1.41023 * 120.12042 * 180.28046 * 13 12 11 15 15 H 1.08007 * 119.99618 * 207.83584 * 14 13 12 16 16 C 1.40007 * 120.00064 * 27.83385 * 14 13 12 17 17 N 1.30793 * 120.00543 * 12.08522 * 16 14 13 18 18 Si 1.86800 * 119.99881 * 192.08629 * 16 14 13 19 19 H 1.48493 * 109.47419 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47236 * 120.00112 * 18 16 14 21 21 H 1.48505 * 109.47267 * 239.99858 * 18 16 14 22 22 C 1.40939 * 119.75972 * 0.25929 * 13 12 11 23 23 C 1.36253 * 119.87550 * 359.97438 * 22 13 12 24 24 H 1.08997 * 109.47190 * 320.14025 * 1 2 3 25 25 H 1.09001 * 109.46997 * 80.14057 * 1 2 3 26 26 H 1.09000 * 109.47300 * 200.14449 * 1 2 3 27 27 H 1.07994 * 119.92883 * 0.02562 * 5 4 2 28 28 H 1.08000 * 119.85368 * 180.02562 * 6 5 4 29 29 H 1.07997 * 119.92647 * 180.02562 * 7 6 5 30 30 H 1.08000 * 120.07642 * 180.28212 * 8 7 6 31 31 H 1.08002 * 119.93761 * 0.03023 * 11 10 9 32 32 H 1.08007 * 120.05888 * 179.77646 * 12 11 10 33 33 H 0.96989 * 120.00986 * 180.02562 * 17 16 14 34 34 H 1.08000 * 120.05939 * 180.02562 * 22 13 12 35 35 H 1.07997 * 119.93492 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5605 1.6228 5 6 2.4434 -1.9005 1.8537 6 6 2.7543 -2.3423 3.1276 7 6 2.8341 -1.4444 4.1779 8 6 2.6087 -0.1014 3.9595 9 6 2.2887 0.3502 2.6776 10 6 2.0399 1.7891 2.4373 11 6 0.7612 2.2238 2.0709 12 6 0.5281 3.5467 1.8428 13 6 1.5749 4.4792 1.9868 14 6 1.3378 5.8503 1.7578 15 1 2.1424 6.4893 1.4249 16 6 0.0593 6.3833 1.9618 17 7 -0.8511 5.6796 2.5836 18 14 -0.3464 8.0995 1.3459 19 1 0.8470 8.6818 0.6811 20 1 -1.4675 8.0249 0.3748 21 1 -0.7411 8.9566 2.4926 22 6 2.8596 4.0365 2.3611 23 6 3.0829 2.7107 2.5821 24 1 -0.3633 0.7888 0.6586 25 1 -0.3633 0.1760 -1.0125 26 1 -0.3634 -0.9648 0.3539 27 1 2.3831 -2.6062 1.0384 28 1 2.9362 -3.3924 3.3029 29 1 3.0776 -1.7956 5.1697 30 1 2.6758 0.5989 4.7789 31 1 -0.0413 1.5089 1.9648 32 1 -0.4584 3.8806 1.5565 33 1 -1.7369 6.0486 2.7247 34 1 3.6652 4.7470 2.4733 35 1 4.0670 2.3704 2.8685 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241338933.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:34 Heat of formation + Delta-G solvation = -4.918002 kcal Electronic energy + Delta-G solvation = -19860.837562 eV Core-core repulsion = 16914.436985 eV Total energy + Delta-G solvation = -2946.400577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34604 -38.90997 -36.52412 -35.63228 -33.07773 -32.01033 -31.48098 -30.32765 -29.47366 -27.01095 -23.79391 -23.70139 -22.69224 -21.73044 -19.35006 -18.76935 -17.65195 -17.16186 -16.61992 -16.22587 -15.99962 -15.55386 -15.37160 -15.18225 -14.86856 -14.59250 -14.33844 -13.84683 -13.59708 -13.44129 -13.31111 -13.23072 -12.88118 -12.77908 -12.53556 -12.37362 -12.31843 -11.93244 -11.53882 -11.29048 -11.15942 -10.89607 -10.04130 -9.73001 -9.46782 -9.20547 -8.96482 -8.65812 -6.38959 0.10482 0.46036 0.94413 1.15236 1.26648 1.30715 1.46160 1.47399 2.02030 2.15942 2.67192 2.86226 3.31025 3.67869 3.98451 4.15485 4.19118 4.23023 4.36296 4.49428 4.56797 4.61384 4.71935 4.86671 4.98826 5.07527 5.17391 5.21605 5.30154 5.38203 5.45553 5.57842 5.61774 5.69265 5.91393 6.04783 6.09169 6.18933 6.31813 6.62356 6.87104 6.99026 8.30228 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.025891 B = 0.005061 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.179931 B = 5530.745789 C = 5989.993918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.513 4.513 2 S 1.377 4.623 3 O -0.892 6.892 4 C -0.476 4.476 5 C -0.034 4.034 6 C -0.146 4.146 7 C -0.087 4.087 8 C -0.162 4.162 9 C 0.023 3.977 10 C -0.154 4.154 11 C -0.094 4.094 12 C -0.173 4.173 13 C 0.083 3.917 14 C -0.502 4.502 15 H 0.071 0.929 16 C 0.031 3.969 17 N -0.835 5.835 18 Si 0.990 3.010 19 H -0.260 1.260 20 H -0.261 1.261 21 H -0.261 1.261 22 C -0.240 4.240 23 C -0.072 4.072 24 H 0.058 0.942 25 H 0.119 0.881 26 H 0.135 0.865 27 H 0.187 0.813 28 H 0.166 0.834 29 H 0.146 0.854 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.288 0.712 34 H 0.091 0.909 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 -19.129 -3.749 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.670 4.670 2 S 1.574 4.426 3 O -0.887 6.887 4 C -0.572 4.572 5 C -0.053 4.053 6 C -0.165 4.165 7 C -0.104 4.104 8 C -0.182 4.182 9 C 0.022 3.978 10 C -0.156 4.156 11 C -0.112 4.112 12 C -0.193 4.193 13 C 0.081 3.919 14 C -0.532 4.532 15 H 0.089 0.911 16 C -0.183 4.183 17 N -0.461 5.461 18 Si 0.809 3.191 19 H -0.183 1.183 20 H -0.186 1.186 21 H -0.185 1.185 22 C -0.260 4.260 23 C -0.090 4.090 24 H 0.077 0.923 25 H 0.137 0.863 26 H 0.154 0.846 27 H 0.204 0.796 28 H 0.183 0.817 29 H 0.164 0.836 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.475 -18.837 -4.383 19.498 hybrid contribution -1.090 2.726 1.869 3.481 sum 1.384 -16.111 -2.514 16.364 Atomic orbital electron populations 1.28111 1.22690 1.08182 1.07974 1.68159 0.85663 0.98245 0.90570 1.93260 1.74274 1.39329 1.81856 1.28138 1.13249 1.00403 1.15459 1.21380 0.92675 0.92435 0.98820 1.21750 1.01109 1.01074 0.92569 1.21547 0.96029 0.91886 1.00976 1.21504 1.03467 0.97329 0.95855 1.18949 0.93561 0.91432 0.93826 1.18266 0.93723 0.91954 1.11647 1.20630 0.95193 0.95272 1.00081 1.20850 0.99361 0.92535 1.06516 1.17952 0.91659 0.94021 0.88279 1.19809 0.96587 0.94532 1.42299 0.91090 1.26846 0.94849 1.04446 0.92125 1.69860 1.05262 1.40093 1.30930 0.85065 0.79134 0.75845 0.79023 1.18328 1.18561 1.18525 1.20829 0.97768 0.95574 1.11779 1.20302 0.96642 0.92899 0.99201 0.92346 0.86285 0.84610 0.79594 0.81672 0.83630 0.87890 0.88093 0.88317 0.90184 0.89037 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -13.24 10.49 113.37 1.19 -12.05 16 2 S 1.38 37.45 13.64 -56.49 -0.77 36.68 16 3 O -0.89 -40.42 14.09 -148.98 -2.10 -42.51 16 4 C -0.48 -14.06 5.61 22.53 0.13 -13.93 16 5 C -0.03 -0.65 9.74 22.24 0.22 -0.43 16 6 C -0.15 -2.69 10.04 22.34 0.22 -2.46 16 7 C -0.09 -2.10 10.03 22.24 0.22 -1.87 16 8 C -0.16 -5.59 9.75 22.53 0.22 -5.37 16 9 C 0.02 0.92 5.28 -20.03 -0.11 0.81 16 10 C -0.15 -7.70 3.10 -19.87 -0.06 -7.76 16 11 C -0.09 -4.98 7.11 22.22 0.16 -4.82 16 12 C -0.17 -10.41 8.60 22.46 0.19 -10.22 16 13 C 0.08 5.15 5.56 -21.28 -0.12 5.04 16 14 C -0.50 -30.44 9.04 23.38 0.21 -30.23 16 15 H 0.07 4.18 7.88 -2.91 -0.02 4.16 16 16 C 0.03 1.69 5.23 85.28 0.45 2.13 16 17 N -0.83 -47.49 10.83 21.84 0.24 -47.26 16 18 Si 0.99 41.60 29.58 68.60 2.03 43.63 16 19 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 22 C -0.24 -13.99 9.73 22.47 0.22 -13.77 16 23 C -0.07 -3.85 9.53 22.22 0.21 -3.64 16 24 H 0.06 2.07 4.49 -2.39 -0.01 2.06 16 25 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.19 1.31 8.06 -2.91 -0.02 1.28 16 28 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 30 H 0.10 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.10 4.88 5.38 -2.91 -0.02 4.86 16 32 H 0.10 6.13 6.18 -2.91 -0.02 6.11 16 33 H 0.29 14.63 8.29 -92.72 -0.77 13.86 16 34 H 0.09 5.07 8.06 -2.91 -0.02 5.04 16 35 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -86.27 305.16 3.85 -82.41 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 1.10 Total: 25.63 kcal Atomic # 6 Polarization: -101.93 SS G_CDS: 3.35 Total: -98.58 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.24 Total: -47.26 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -2.10 Total: -42.51 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Atomic # 16 Polarization: 37.45 SS G_CDS: -0.77 Total: 36.68 kcal Total: -86.27 3.85 -82.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241338933.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.497 kcal (2) G-P(sol) polarization free energy of solvation -86.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds