Wall clock time and date at job start Tue Mar 31 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42099 * 109.46959 * 2 1 4 4 C 1.76202 * 103.00370 * 250.94147 * 2 1 3 5 5 C 1.38047 * 120.05791 * 95.02066 * 4 2 1 6 6 C 1.38291 * 120.11959 * 179.97438 * 5 4 2 7 7 C 1.38345 * 120.24343 * 359.76957 * 6 5 4 8 8 C 1.38005 * 120.11816 * 0.50711 * 7 6 5 9 9 C 1.39301 * 120.06355 * 275.00130 * 4 2 1 10 10 C 1.48411 * 120.11752 * 359.97438 * 9 4 2 11 11 C 1.39725 * 120.00070 * 310.02062 * 10 9 4 12 12 C 1.38394 * 120.38039 * 180.02562 * 11 10 9 13 13 C 1.37717 * 120.37790 * 359.94734 * 12 11 10 14 14 C 1.40749 * 119.99000 * 0.03295 * 13 12 11 15 15 C 1.41426 * 120.18686 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00325 * 154.84898 * 15 14 13 17 17 C 1.39931 * 119.99910 * 334.84949 * 15 14 13 18 18 N 1.30829 * 120.00267 * 342.69653 * 17 15 14 19 19 Si 1.86806 * 120.00118 * 162.70167 * 17 15 14 20 20 H 1.48500 * 109.46909 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47198 * 119.99870 * 19 17 15 22 22 H 1.48495 * 109.47097 * 239.99643 * 19 17 15 23 23 C 1.38728 * 119.99870 * 129.75121 * 10 9 4 24 24 H 1.09005 * 109.46693 * 169.05620 * 1 2 3 25 25 H 1.08996 * 109.47307 * 289.05627 * 1 2 3 26 26 H 1.08997 * 109.46794 * 49.06157 * 1 2 3 27 27 H 1.07996 * 119.93872 * 359.97438 * 5 4 2 28 28 H 1.08002 * 119.88286 * 180.02562 * 6 5 4 29 29 H 1.07998 * 119.94568 * 180.28419 * 7 6 5 30 30 H 1.08001 * 120.06210 * 179.74023 * 8 7 6 31 31 H 1.07997 * 119.80962 * 359.97438 * 11 10 9 32 32 H 1.08005 * 119.81043 * 179.97438 * 12 11 10 33 33 H 1.08008 * 120.00361 * 180.02562 * 13 12 11 34 34 H 0.96996 * 120.00354 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.19429 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2105 -0.5606 -1.6227 5 6 2.4679 0.3521 -2.6259 6 6 2.7798 -0.0865 -3.8998 7 6 2.8402 -1.4409 -4.1752 8 6 2.5790 -2.3620 -3.1812 9 6 2.2651 -1.9255 -1.8956 10 6 1.9902 -2.9114 -0.8208 11 6 2.6415 -2.8023 0.4105 12 6 2.3915 -3.7176 1.4180 13 6 1.4971 -4.7457 1.2188 14 6 0.8319 -4.8702 -0.0153 15 6 -0.0870 -5.9247 -0.2246 16 1 -0.8754 -5.8170 -0.9548 17 6 0.0253 -7.1076 0.5144 18 7 1.1414 -7.3862 1.1376 19 14 -1.4183 -8.2892 0.6111 20 1 -2.5555 -7.7466 -0.1747 21 1 -1.0172 -9.6073 0.0570 22 1 -1.8300 -8.4528 2.0285 23 6 1.0824 -3.9380 -1.0368 24 1 -0.3633 -1.0090 -0.1951 25 1 -0.3634 0.3355 0.9713 26 1 -0.3633 0.6734 -0.7763 27 1 2.4258 1.4105 -2.4155 28 1 2.9809 0.6309 -4.6817 29 1 3.0886 -1.7781 -5.1706 30 1 2.6223 -3.4191 -3.3982 31 1 3.3447 -1.9997 0.5767 32 1 2.9004 -3.6248 2.3662 33 1 1.3063 -5.4564 2.0094 34 1 1.2192 -8.2060 1.6502 35 1 0.5737 -4.0224 -1.9857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241339645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:44 Heat of formation + Delta-G solvation = -0.802251 kcal Electronic energy + Delta-G solvation = -19518.041371 eV Core-core repulsion = 16571.819267 eV Total energy + Delta-G solvation = -2946.222104 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.08093 -37.31261 -35.38516 -33.91434 -31.73189 -30.86958 -29.96172 -28.48129 -27.98166 -25.41898 -22.83804 -22.58093 -20.63741 -20.24624 -17.94221 -17.21047 -16.28627 -15.50374 -15.12200 -15.02268 -14.80117 -14.39044 -14.06883 -13.54467 -13.49770 -13.22527 -12.81925 -12.56807 -12.37942 -12.32708 -11.75926 -11.73266 -11.40903 -11.27647 -11.16452 -10.96586 -10.71499 -10.54794 -9.95252 -9.82952 -9.57981 -9.32431 -8.96273 -8.65560 -7.99062 -7.61618 -7.28111 -6.87287 -4.48605 1.14287 1.54354 2.21746 2.66232 2.81791 3.02657 3.04380 3.07124 3.11394 3.85405 3.95703 4.25057 4.50004 5.11046 5.17423 5.22365 5.42502 5.53797 5.54616 5.61262 5.79324 6.03945 6.18308 6.22719 6.25942 6.31006 6.50331 6.60620 6.69392 6.79209 6.90496 7.05281 7.17495 7.21751 7.40489 7.67289 7.87453 7.90979 8.12167 8.49114 8.76137 8.80370 10.07694 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.004917 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.896614 B = 5693.563209 C = 6251.764254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.495 4.495 2 S 1.341 4.659 3 O -0.883 6.883 4 C -0.457 4.457 5 C -0.056 4.056 6 C -0.154 4.154 7 C -0.086 4.086 8 C -0.131 4.131 9 C 0.064 3.936 10 C -0.058 4.058 11 C -0.225 4.225 12 C -0.100 4.100 13 C -0.153 4.153 14 C 0.109 3.891 15 C -0.461 4.461 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.791 5.791 19 Si 0.906 3.094 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.271 1.271 23 C -0.195 4.195 24 H 0.117 0.883 25 H 0.102 0.898 26 H 0.074 0.926 27 H 0.123 0.877 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.130 0.870 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.120 0.880 34 H 0.281 0.719 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.510 5.340 -2.477 5.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 1.540 4.460 3 O -0.879 6.879 4 C -0.554 4.554 5 C -0.075 4.075 6 C -0.173 4.173 7 C -0.104 4.104 8 C -0.149 4.149 9 C 0.063 3.937 10 C -0.059 4.059 11 C -0.246 4.246 12 C -0.118 4.118 13 C -0.172 4.172 14 C 0.107 3.893 15 C -0.490 4.490 16 H 0.097 0.903 17 C -0.141 4.141 18 N -0.416 5.416 19 Si 0.730 3.270 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.196 1.196 23 C -0.215 4.215 24 H 0.135 0.865 25 H 0.121 0.879 26 H 0.093 0.907 27 H 0.141 0.859 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.148 0.852 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.138 0.862 34 H 0.092 0.908 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.213 5.453 -1.602 5.812 hybrid contribution -1.398 0.496 -1.879 2.394 sum -0.185 5.949 -3.481 6.895 Atomic orbital electron populations 1.27694 1.22645 1.08281 1.06531 1.70962 0.85999 0.96593 0.92399 1.92913 1.73873 1.38867 1.82243 1.27564 1.12952 0.98691 1.16168 1.20966 0.94899 0.99172 0.92447 1.21120 1.03596 0.95859 0.96762 1.21232 0.97034 0.93207 0.98927 1.21443 1.00863 1.00059 0.92583 1.18796 0.90693 0.90801 0.93413 1.18388 0.99804 0.95327 0.92371 1.20378 1.06913 1.03065 0.94215 1.20639 0.98542 0.95374 0.97260 1.21462 0.99758 0.98164 0.97826 1.17552 0.90695 0.90862 0.90236 1.19613 1.12204 0.98061 1.19170 0.90319 1.25884 0.96074 0.98755 0.93385 1.69807 1.24092 1.23747 1.23993 0.86290 0.81906 0.79659 0.79096 1.18408 1.20000 1.19628 1.21008 1.03262 0.98520 0.98692 0.86452 0.87896 0.90651 0.85932 0.86436 0.86084 0.85167 0.88700 0.88472 0.86191 0.90766 0.88602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -7.25 10.70 101.05 1.08 -6.17 16 2 S 1.34 21.50 10.92 -107.50 -1.17 20.33 16 3 O -0.88 -17.75 16.78 -35.23 -0.59 -18.34 16 4 C -0.46 -7.89 5.61 -39.26 -0.22 -8.11 16 5 C -0.06 -0.93 9.44 -39.63 -0.37 -1.30 16 6 C -0.15 -2.25 10.04 -39.52 -0.40 -2.65 16 7 C -0.09 -1.23 10.03 -39.63 -0.40 -1.62 16 8 C -0.13 -2.14 9.51 -39.25 -0.37 -2.51 16 9 C 0.06 1.14 5.47 -104.90 -0.57 0.57 16 10 C -0.06 -1.13 5.05 -104.97 -0.53 -1.66 16 11 C -0.23 -4.18 8.07 -38.97 -0.31 -4.49 16 12 C -0.10 -1.96 10.01 -39.71 -0.40 -2.35 16 13 C -0.15 -3.46 8.69 -38.82 -0.34 -3.80 16 14 C 0.11 2.57 5.57 -106.86 -0.59 1.98 16 15 C -0.46 -11.12 9.05 -37.74 -0.34 -11.46 16 16 H 0.08 1.84 7.90 -52.49 -0.41 1.43 16 17 C 0.08 1.78 5.14 -17.35 -0.09 1.69 16 18 N -0.79 -18.82 10.97 55.55 0.61 -18.21 16 19 Si 0.91 17.36 29.59 -169.99 -5.03 12.33 16 20 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 C -0.20 -4.19 9.25 -38.53 -0.36 -4.54 16 24 H 0.12 1.73 8.14 -51.92 -0.42 1.30 16 25 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.12 2.06 7.34 -52.49 -0.39 1.67 16 28 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 30 H 0.13 2.04 8.04 -52.49 -0.42 1.62 16 31 H 0.09 1.52 7.02 -52.49 -0.37 1.15 16 32 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 33 H 0.12 2.84 6.18 -52.48 -0.32 2.52 16 34 H 0.28 6.09 8.30 -40.82 -0.34 5.75 16 35 H 0.10 1.99 8.04 -52.49 -0.42 1.57 16 LS Contribution 312.61 15.07 4.71 4.71 Total: -1.00 -28.33 312.61 -9.70 -38.02 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -4.01 Total: 7.59 kcal Atomic # 6 Polarization: -42.22 SS G_CDS: -4.22 Total: -46.43 kcal Atomic # 7 Polarization: -18.82 SS G_CDS: 0.61 Total: -18.21 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.59 Total: -18.34 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: 21.50 SS G_CDS: -1.17 Total: 20.33 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.33 -9.70 -38.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241339645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.222 kcal (2) G-P(sol) polarization free energy of solvation -28.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds