Wall clock time and date at job start Tue Mar 31 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42099 * 109.46959 * 2 1 4 4 C 1.76202 * 103.00370 * 250.94147 * 2 1 3 5 5 C 1.38047 * 120.05791 * 95.02066 * 4 2 1 6 6 C 1.38291 * 120.11959 * 179.97438 * 5 4 2 7 7 C 1.38345 * 120.24343 * 359.76957 * 6 5 4 8 8 C 1.38005 * 120.11816 * 0.50711 * 7 6 5 9 9 C 1.39301 * 120.06355 * 275.00130 * 4 2 1 10 10 C 1.48411 * 120.11752 * 359.97438 * 9 4 2 11 11 C 1.39725 * 120.00070 * 310.02062 * 10 9 4 12 12 C 1.38394 * 120.38039 * 180.02562 * 11 10 9 13 13 C 1.37717 * 120.37790 * 359.94734 * 12 11 10 14 14 C 1.40749 * 119.99000 * 0.03295 * 13 12 11 15 15 C 1.41426 * 120.18686 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00325 * 154.84898 * 15 14 13 17 17 C 1.39931 * 119.99910 * 334.84949 * 15 14 13 18 18 N 1.30829 * 120.00267 * 342.69653 * 17 15 14 19 19 Si 1.86806 * 120.00118 * 162.70167 * 17 15 14 20 20 H 1.48500 * 109.46909 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47198 * 119.99870 * 19 17 15 22 22 H 1.48495 * 109.47097 * 239.99643 * 19 17 15 23 23 C 1.38728 * 119.99870 * 129.75121 * 10 9 4 24 24 H 1.09005 * 109.46693 * 169.05620 * 1 2 3 25 25 H 1.08996 * 109.47307 * 289.05627 * 1 2 3 26 26 H 1.08997 * 109.46794 * 49.06157 * 1 2 3 27 27 H 1.07996 * 119.93872 * 359.97438 * 5 4 2 28 28 H 1.08002 * 119.88286 * 180.02562 * 6 5 4 29 29 H 1.07998 * 119.94568 * 180.28419 * 7 6 5 30 30 H 1.08001 * 120.06210 * 179.74023 * 8 7 6 31 31 H 1.07997 * 119.80962 * 359.97438 * 11 10 9 32 32 H 1.08005 * 119.81043 * 179.97438 * 12 11 10 33 33 H 1.08008 * 120.00361 * 180.02562 * 13 12 11 34 34 H 0.96996 * 120.00354 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.19429 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2105 -0.5606 -1.6227 5 6 2.4679 0.3521 -2.6259 6 6 2.7798 -0.0865 -3.8998 7 6 2.8402 -1.4409 -4.1752 8 6 2.5790 -2.3620 -3.1812 9 6 2.2651 -1.9255 -1.8956 10 6 1.9902 -2.9114 -0.8208 11 6 2.6415 -2.8023 0.4105 12 6 2.3915 -3.7176 1.4180 13 6 1.4971 -4.7457 1.2188 14 6 0.8319 -4.8702 -0.0153 15 6 -0.0870 -5.9247 -0.2246 16 1 -0.8754 -5.8170 -0.9548 17 6 0.0253 -7.1076 0.5144 18 7 1.1414 -7.3862 1.1376 19 14 -1.4183 -8.2892 0.6111 20 1 -2.5555 -7.7466 -0.1747 21 1 -1.0172 -9.6073 0.0570 22 1 -1.8300 -8.4528 2.0285 23 6 1.0824 -3.9380 -1.0368 24 1 -0.3633 -1.0090 -0.1951 25 1 -0.3634 0.3355 0.9713 26 1 -0.3633 0.6734 -0.7763 27 1 2.4258 1.4105 -2.4155 28 1 2.9809 0.6309 -4.6817 29 1 3.0886 -1.7781 -5.1706 30 1 2.6223 -3.4191 -3.3982 31 1 3.3447 -1.9997 0.5767 32 1 2.9004 -3.6248 2.3662 33 1 1.3063 -5.4564 2.0094 34 1 1.2192 -8.2060 1.6502 35 1 0.5737 -4.0224 -1.9857 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241339645.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:44 Heat of formation + Delta-G solvation = -15.100274 kcal Electronic energy + Delta-G solvation = -19518.661380 eV Core-core repulsion = 16571.819267 eV Total energy + Delta-G solvation = -2946.842113 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42821 -38.84737 -36.83278 -35.56554 -33.17473 -32.15598 -31.59278 -29.71125 -29.44711 -27.12095 -24.22015 -23.88974 -22.23961 -21.75851 -19.38836 -18.66726 -17.67247 -17.11068 -16.56535 -16.39957 -16.17712 -15.78228 -15.36895 -15.08850 -14.96265 -14.51018 -14.28853 -13.96163 -13.76725 -13.61095 -13.34774 -13.06317 -12.88141 -12.82307 -12.62130 -12.41238 -12.22735 -12.08281 -11.44177 -11.34516 -11.17320 -10.99700 -10.22334 -10.02707 -9.41318 -9.21965 -8.81667 -8.56895 -6.26744 -0.12662 0.24222 0.91126 1.08477 1.23100 1.44954 1.55726 1.57913 1.78496 2.26439 2.64545 2.84146 2.94444 3.75561 3.84743 3.93598 4.12914 4.23799 4.36215 4.43480 4.52711 4.64444 4.72659 4.84398 4.96856 5.07115 5.16206 5.21849 5.25729 5.29360 5.41610 5.45080 5.58400 5.74816 5.96343 6.06149 6.16624 6.24850 6.44942 6.77705 7.02581 7.09483 8.40189 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.022148 B = 0.004917 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.896614 B = 5693.563209 C = 6251.764254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.492 4.492 2 S 1.362 4.638 3 O -0.924 6.924 4 C -0.465 4.465 5 C -0.075 4.075 6 C -0.144 4.144 7 C -0.078 4.078 8 C -0.140 4.140 9 C 0.044 3.956 10 C -0.050 4.050 11 C -0.215 4.215 12 C -0.096 4.096 13 C -0.176 4.176 14 C 0.082 3.918 15 C -0.498 4.498 16 H 0.072 0.928 17 C 0.041 3.959 18 N -0.823 5.823 19 Si 0.972 3.028 20 H -0.262 1.262 21 H -0.270 1.270 22 H -0.265 1.265 23 C -0.206 4.206 24 H 0.116 0.884 25 H 0.124 0.876 26 H 0.073 0.927 27 H 0.118 0.882 28 H 0.151 0.849 29 H 0.158 0.842 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.103 0.897 34 H 0.287 0.713 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.866 6.151 -3.366 7.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.650 4.650 2 S 1.563 4.437 3 O -0.919 6.919 4 C -0.563 4.563 5 C -0.094 4.094 6 C -0.163 4.163 7 C -0.095 4.095 8 C -0.159 4.159 9 C 0.042 3.958 10 C -0.050 4.050 11 C -0.235 4.235 12 C -0.114 4.114 13 C -0.196 4.196 14 C 0.080 3.920 15 C -0.528 4.528 16 H 0.090 0.910 17 C -0.174 4.174 18 N -0.450 5.450 19 Si 0.794 3.206 20 H -0.185 1.185 21 H -0.195 1.195 22 H -0.190 1.190 23 C -0.225 4.225 24 H 0.135 0.865 25 H 0.143 0.857 26 H 0.092 0.908 27 H 0.136 0.864 28 H 0.168 0.832 29 H 0.176 0.824 30 H 0.150 0.850 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.588 6.276 -2.494 6.938 hybrid contribution -1.443 0.400 -1.706 2.270 sum 0.145 6.677 -4.200 7.889 Atomic orbital electron populations 1.27648 1.21156 1.08319 1.07851 1.70362 0.86495 0.94996 0.91843 1.92847 1.75363 1.40670 1.83063 1.27557 1.13426 0.98540 1.16736 1.21114 0.95911 0.98893 0.93488 1.21518 1.01452 0.96755 0.96605 1.21605 0.95315 0.92647 0.99975 1.21629 1.00888 1.00796 0.92616 1.18699 0.92810 0.90568 0.93693 1.18529 0.98530 0.94772 0.93207 1.20755 1.06241 1.03037 0.93455 1.20944 0.97417 0.94233 0.98779 1.21428 1.01464 0.99310 0.97353 1.17842 0.91399 0.91579 0.91217 1.19801 1.13089 0.99363 1.20553 0.91014 1.26570 0.98197 0.99877 0.92757 1.69851 1.25543 1.24614 1.24964 0.85297 0.78635 0.77490 0.79144 1.18545 1.19527 1.18954 1.21047 1.04046 0.99162 0.98271 0.86536 0.85744 0.90797 0.86430 0.83166 0.82425 0.85042 0.85713 0.85537 0.87884 0.90218 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.49 -13.76 10.70 113.37 1.21 -12.54 16 2 S 1.36 41.95 10.92 -56.49 -0.62 41.34 16 3 O -0.92 -36.26 16.78 -148.98 -2.50 -38.76 16 4 C -0.47 -15.39 5.61 22.48 0.13 -15.26 16 5 C -0.07 -2.36 9.44 22.24 0.21 -2.15 16 6 C -0.14 -3.73 10.04 22.31 0.22 -3.50 16 7 C -0.08 -1.95 10.03 22.24 0.22 -1.73 16 8 C -0.14 -4.33 9.51 22.48 0.21 -4.12 16 9 C 0.04 1.49 5.47 -20.04 -0.11 1.38 16 10 C -0.05 -1.89 5.05 -20.09 -0.10 -1.99 16 11 C -0.21 -7.66 8.07 22.67 0.18 -7.47 16 12 C -0.10 -3.66 10.01 22.18 0.22 -3.44 16 13 C -0.18 -8.13 8.69 22.76 0.20 -7.93 16 14 C 0.08 3.98 5.57 -21.32 -0.12 3.86 16 15 C -0.50 -24.96 9.05 23.47 0.21 -24.75 16 16 H 0.07 3.52 7.90 -2.91 -0.02 3.50 16 17 C 0.04 1.94 5.14 85.25 0.44 2.37 16 18 N -0.82 -40.26 10.97 21.82 0.24 -40.02 16 19 Si 0.97 36.24 29.59 68.60 2.03 38.27 16 20 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 21 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 22 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 23 C -0.21 -8.96 9.25 22.95 0.21 -8.75 16 24 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 25 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 26 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.12 3.80 7.34 -2.91 -0.02 3.78 16 28 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.16 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.13 3.96 8.04 -2.91 -0.02 3.94 16 31 H 0.13 3.69 7.02 -2.91 -0.02 3.67 16 32 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 33 H 0.10 5.06 6.18 -2.91 -0.02 5.04 16 34 H 0.29 12.71 8.30 -92.71 -0.77 11.94 16 35 H 0.09 3.99 8.04 -2.91 -0.02 3.97 16 Total: -1.00 -61.85 312.61 3.59 -58.25 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 1.09 Total: 26.96 kcal Atomic # 6 Polarization: -89.38 SS G_CDS: 3.35 Total: -86.03 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.24 Total: -40.02 kcal Atomic # 8 Polarization: -36.26 SS G_CDS: -2.50 Total: -38.76 kcal Atomic # 14 Polarization: 36.24 SS G_CDS: 2.03 Total: 38.27 kcal Atomic # 16 Polarization: 41.95 SS G_CDS: -0.62 Total: 41.34 kcal Total: -61.85 3.59 -58.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241339645.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.154 kcal (2) G-P(sol) polarization free energy of solvation -61.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds