Wall clock time and date at job start Tue Mar 31 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42100 * 109.47169 * 2 1 4 4 C 1.76205 * 103.00032 * 109.05368 * 2 1 3 5 5 C 1.37948 * 120.07689 * 95.15979 * 4 2 1 6 6 C 1.38368 * 120.15270 * 179.97438 * 5 4 2 7 7 C 1.38416 * 120.30110 * 0.02771 * 6 5 4 8 8 C 1.37913 * 120.14667 * 359.66984 * 7 6 5 9 9 C 1.39626 * 120.07902 * 275.13810 * 4 2 1 10 10 C 1.47881 * 120.14437 * 0.02570 * 9 4 2 11 11 C 1.39151 * 120.33788 * 77.06826 * 10 9 4 12 12 C 1.38091 * 119.98917 * 179.97438 * 11 10 9 13 13 C 1.38928 * 120.66654 * 359.75212 * 12 11 10 14 14 C 1.36433 * 120.68817 * 0.50856 * 13 12 11 15 15 C 1.40751 * 119.98692 * 359.49480 * 14 13 12 16 16 C 1.40883 * 120.33124 * 180.23109 * 15 14 13 17 17 H 1.08000 * 119.99729 * 209.30393 * 16 15 14 18 18 C 1.40074 * 119.99799 * 29.30500 * 16 15 14 19 19 N 1.30775 * 120.00211 * 10.40695 * 18 16 15 20 20 Si 1.86800 * 119.99814 * 190.40494 * 18 16 15 21 21 H 1.48505 * 109.47101 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47127 * 119.99974 * 20 18 16 23 23 H 1.48508 * 109.47227 * 240.00208 * 20 18 16 24 24 H 1.08997 * 109.46844 * 305.92319 * 1 2 3 25 25 H 1.08996 * 109.46958 * 65.92646 * 1 2 3 26 26 H 1.09003 * 109.47097 * 185.92438 * 1 2 3 27 27 H 1.08007 * 119.92215 * 0.02562 * 5 4 2 28 28 H 1.07994 * 119.85482 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.92822 * 179.97438 * 7 6 5 30 30 H 1.07997 * 120.07364 * 180.30148 * 8 7 6 31 31 H 1.08008 * 120.00511 * 359.95941 * 11 10 9 32 32 H 1.07993 * 119.66973 * 179.97438 * 12 11 10 33 33 H 1.08003 * 119.65460 * 180.25522 * 13 12 11 34 34 H 1.08001 * 120.00972 * 179.76848 * 14 13 12 35 35 H 0.96995 * 119.99488 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5605 1.6228 5 6 2.4705 -1.8963 1.8486 6 6 2.7824 -2.3380 3.1222 7 6 2.8352 -1.4444 4.1780 8 6 2.5835 -0.1053 3.9651 9 6 2.2624 0.3464 2.6832 10 6 1.9846 1.7799 2.4487 11 6 0.6759 2.2255 2.2905 12 6 0.4247 3.5657 2.0724 13 6 1.4676 4.4817 2.0135 14 6 2.7614 4.0741 2.1597 15 6 3.0497 2.7147 2.3833 16 6 4.3827 2.2866 2.5401 17 1 4.6671 1.2872 2.2455 18 6 5.3392 3.1571 3.0781 19 7 4.9639 4.2861 3.6210 20 14 7.1508 2.7053 3.0201 21 1 7.3108 1.3851 2.3593 22 1 7.8939 3.7368 2.2527 23 1 7.6878 2.6344 4.4029 24 1 -0.3633 0.6029 0.8322 25 1 -0.3633 0.4192 -0.9383 26 1 -0.3633 -1.0222 0.1061 27 1 2.4314 -2.5988 1.0291 28 1 2.9848 -3.3849 3.2936 29 1 3.0789 -1.7958 5.1696 30 1 2.6298 0.5917 4.7888 31 1 -0.1433 1.5232 2.3380 32 1 -0.5929 3.9058 1.9498 33 1 1.2522 5.5267 1.8462 34 1 3.5639 4.7950 2.1083 35 1 5.6263 4.8890 3.9932 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241341427.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:48 Heat of formation + Delta-G solvation = 16.329439 kcal Electronic energy + Delta-G solvation = -20452.383311 eV Core-core repulsion = 17506.904092 eV Total energy + Delta-G solvation = -2945.479219 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.74568 -36.99993 -34.80449 -33.54949 -31.66059 -30.52734 -29.51194 -28.29060 -27.94138 -25.14508 -22.42723 -22.17202 -20.77121 -19.71617 -17.39881 -17.12141 -16.04713 -15.36595 -14.97359 -14.74914 -14.36632 -14.10571 -13.71791 -13.36256 -13.32327 -13.07758 -12.54899 -12.45773 -11.95910 -11.87439 -11.59079 -11.44002 -11.14932 -10.99625 -10.93823 -10.79894 -10.44438 -10.33110 -9.60365 -9.47115 -9.26598 -9.15404 -8.59490 -8.08332 -7.78661 -7.24384 -7.08582 -6.62586 -4.25900 1.53829 1.96796 2.55786 2.85771 3.07883 3.11303 3.17573 3.32049 3.33345 4.00597 4.27047 4.68797 4.75536 5.31702 5.47167 5.54339 5.61316 5.67715 5.81358 5.95322 6.08117 6.14720 6.39347 6.44195 6.52598 6.58862 6.69914 6.86015 6.96948 7.14509 7.18860 7.32809 7.47756 7.55286 7.71731 7.95069 8.16227 8.20174 8.37856 8.74263 8.99962 9.10597 10.29873 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.014178 B = 0.008769 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.389631 B = 3192.392743 C = 4123.727761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.508 4.508 2 S 1.306 4.694 3 O -0.803 6.803 4 C -0.467 4.467 5 C -0.052 4.052 6 C -0.163 4.163 7 C -0.093 4.093 8 C -0.122 4.122 9 C 0.096 3.904 10 C -0.174 4.174 11 C -0.086 4.086 12 C -0.233 4.233 13 C -0.106 4.106 14 C -0.143 4.143 15 C 0.162 3.838 16 C -0.447 4.447 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.804 5.804 20 Si 0.906 3.094 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.275 1.275 24 H 0.089 0.911 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.124 0.876 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 -12.175 -4.423 13.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.663 4.663 2 S 1.501 4.499 3 O -0.798 6.798 4 C -0.563 4.563 5 C -0.072 4.072 6 C -0.182 4.182 7 C -0.111 4.111 8 C -0.141 4.141 9 C 0.095 3.905 10 C -0.176 4.176 11 C -0.104 4.104 12 C -0.252 4.252 13 C -0.125 4.125 14 C -0.163 4.163 15 C 0.159 3.841 16 C -0.477 4.477 17 H 0.092 0.908 18 C -0.143 4.143 19 N -0.431 5.431 20 Si 0.730 3.270 21 H -0.184 1.184 22 H -0.198 1.198 23 H -0.201 1.201 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.116 0.884 27 H 0.142 0.858 28 H 0.133 0.867 29 H 0.132 0.868 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.136 0.864 35 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.971 -11.695 -5.029 13.072 hybrid contribution -0.046 1.120 1.909 2.213 sum -3.016 -10.575 -3.120 11.431 Atomic orbital electron populations 1.27970 1.24595 1.06716 1.07048 1.69333 0.85997 1.01773 0.92827 1.93399 1.71018 1.35178 1.80225 1.27929 1.13111 0.99131 1.16088 1.20598 0.96405 0.93522 0.96640 1.21054 1.04609 0.98997 0.93513 1.21152 0.97780 0.93645 0.98516 1.21483 1.00058 0.95028 0.97499 1.18780 0.87909 0.92613 0.91247 1.18513 0.93351 0.90627 1.15107 1.20340 0.93891 0.94885 1.01264 1.20125 0.96583 0.93509 1.15029 1.20395 0.93969 0.96809 1.01286 1.21039 0.94978 0.96887 1.03363 1.17212 0.91356 0.90338 0.85145 1.19445 0.92923 0.99578 1.35740 0.90784 1.25910 1.01192 0.94152 0.93073 1.69785 1.35941 1.09175 1.28167 0.86297 0.82219 0.79877 0.78559 1.18446 1.19786 1.20097 0.89197 0.88830 0.88426 0.85795 0.86712 0.86789 0.86167 0.90170 0.89940 0.89850 0.86433 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.51 -7.10 10.64 101.05 1.08 -6.03 16 2 S 1.31 20.35 13.78 -107.50 -1.48 18.87 16 3 O -0.80 -18.61 14.17 -35.23 -0.50 -19.11 16 4 C -0.47 -8.40 5.62 -39.17 -0.22 -8.62 16 5 C -0.05 -0.75 9.74 -39.64 -0.39 -1.14 16 6 C -0.16 -2.37 10.04 -39.47 -0.40 -2.76 16 7 C -0.09 -1.54 10.03 -39.63 -0.40 -1.94 16 8 C -0.12 -2.50 9.69 -39.17 -0.38 -2.88 16 9 C 0.10 2.11 4.12 -104.90 -0.43 1.67 16 10 C -0.17 -4.42 2.96 -104.22 -0.31 -4.72 16 11 C -0.09 -2.08 8.05 -39.30 -0.32 -2.40 16 12 C -0.23 -5.75 10.03 -39.38 -0.40 -6.15 16 13 C -0.11 -2.75 9.96 -39.98 -0.40 -3.15 16 14 C -0.14 -4.05 8.60 -39.28 -0.34 -4.39 16 15 C 0.16 4.56 4.79 -106.56 -0.51 4.05 16 16 C -0.45 -12.51 8.36 -37.89 -0.32 -12.82 16 17 H 0.07 2.08 7.34 -52.49 -0.39 1.70 16 18 C 0.07 1.92 5.26 -17.31 -0.09 1.83 16 19 N -0.80 -21.75 10.86 55.55 0.60 -21.14 16 20 Si 0.91 19.92 29.57 -169.99 -5.03 14.89 16 21 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 24 H 0.09 1.53 5.10 -51.93 -0.26 1.27 16 25 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.10 1.04 8.14 -51.92 -0.42 0.62 16 27 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 28 H 0.11 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 30 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 31 H 0.08 1.76 6.35 -52.48 -0.33 1.43 16 32 H 0.08 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.08 1.94 8.06 -52.48 -0.42 1.52 16 34 H 0.12 3.41 6.24 -52.49 -0.33 3.08 16 35 H 0.28 6.84 8.29 -40.82 -0.34 6.50 16 LS Contribution 305.54 15.07 4.60 4.60 Total: -1.00 -34.98 305.54 -9.44 -44.42 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -3.83 Total: 6.90 kcal Atomic # 6 Polarization: -45.62 SS G_CDS: -3.81 Total: -49.44 kcal Atomic # 7 Polarization: -21.75 SS G_CDS: 0.60 Total: -21.14 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.50 Total: -19.11 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Atomic # 16 Polarization: 20.35 SS G_CDS: -1.48 Total: 18.87 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.98 -9.44 -44.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241341427.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.752 kcal (2) G-P(sol) polarization free energy of solvation -34.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds