Wall clock time and date at job start Tue Mar 31 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42100 * 109.47169 * 2 1 4 4 C 1.76205 * 103.00032 * 109.05368 * 2 1 3 5 5 C 1.37948 * 120.07689 * 95.15979 * 4 2 1 6 6 C 1.38368 * 120.15270 * 179.97438 * 5 4 2 7 7 C 1.38416 * 120.30110 * 0.02771 * 6 5 4 8 8 C 1.37913 * 120.14667 * 359.66984 * 7 6 5 9 9 C 1.39626 * 120.07902 * 275.13810 * 4 2 1 10 10 C 1.47881 * 120.14437 * 0.02570 * 9 4 2 11 11 C 1.39151 * 120.33788 * 77.06826 * 10 9 4 12 12 C 1.38091 * 119.98917 * 179.97438 * 11 10 9 13 13 C 1.38928 * 120.66654 * 359.75212 * 12 11 10 14 14 C 1.36433 * 120.68817 * 0.50856 * 13 12 11 15 15 C 1.40751 * 119.98692 * 359.49480 * 14 13 12 16 16 C 1.40883 * 120.33124 * 180.23109 * 15 14 13 17 17 H 1.08000 * 119.99729 * 209.30393 * 16 15 14 18 18 C 1.40074 * 119.99799 * 29.30500 * 16 15 14 19 19 N 1.30775 * 120.00211 * 10.40695 * 18 16 15 20 20 Si 1.86800 * 119.99814 * 190.40494 * 18 16 15 21 21 H 1.48505 * 109.47101 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47127 * 119.99974 * 20 18 16 23 23 H 1.48508 * 109.47227 * 240.00208 * 20 18 16 24 24 H 1.08997 * 109.46844 * 305.92319 * 1 2 3 25 25 H 1.08996 * 109.46958 * 65.92646 * 1 2 3 26 26 H 1.09003 * 109.47097 * 185.92438 * 1 2 3 27 27 H 1.08007 * 119.92215 * 0.02562 * 5 4 2 28 28 H 1.07994 * 119.85482 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.92822 * 179.97438 * 7 6 5 30 30 H 1.07997 * 120.07364 * 180.30148 * 8 7 6 31 31 H 1.08008 * 120.00511 * 359.95941 * 11 10 9 32 32 H 1.07993 * 119.66973 * 179.97438 * 12 11 10 33 33 H 1.08003 * 119.65460 * 180.25522 * 13 12 11 34 34 H 1.08001 * 120.00972 * 179.76848 * 14 13 12 35 35 H 0.96995 * 119.99488 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2877 1.3397 0.0000 4 6 2.2104 -0.5605 1.6228 5 6 2.4705 -1.8963 1.8486 6 6 2.7824 -2.3380 3.1222 7 6 2.8352 -1.4444 4.1780 8 6 2.5835 -0.1053 3.9651 9 6 2.2624 0.3464 2.6832 10 6 1.9846 1.7799 2.4487 11 6 0.6759 2.2255 2.2905 12 6 0.4247 3.5657 2.0724 13 6 1.4676 4.4817 2.0135 14 6 2.7614 4.0741 2.1597 15 6 3.0497 2.7147 2.3833 16 6 4.3827 2.2866 2.5401 17 1 4.6671 1.2872 2.2455 18 6 5.3392 3.1571 3.0781 19 7 4.9639 4.2861 3.6210 20 14 7.1508 2.7053 3.0201 21 1 7.3108 1.3851 2.3593 22 1 7.8939 3.7368 2.2527 23 1 7.6878 2.6344 4.4029 24 1 -0.3633 0.6029 0.8322 25 1 -0.3633 0.4192 -0.9383 26 1 -0.3633 -1.0222 0.1061 27 1 2.4314 -2.5988 1.0291 28 1 2.9848 -3.3849 3.2936 29 1 3.0789 -1.7958 5.1696 30 1 2.6298 0.5917 4.7888 31 1 -0.1433 1.5232 2.3380 32 1 -0.5929 3.9058 1.9498 33 1 1.2522 5.5267 1.8462 34 1 3.5639 4.7950 2.1083 35 1 5.6263 4.8890 3.9932 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241341427.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:47 Heat of formation + Delta-G solvation = -6.015935 kcal Electronic energy + Delta-G solvation = -20453.352279 eV Core-core repulsion = 17506.904092 eV Total energy + Delta-G solvation = -2946.448187 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.29565 -38.72868 -36.37004 -35.54084 -33.28802 -31.87126 -31.45521 -29.73738 -29.39459 -27.13713 -24.00253 -23.51239 -22.76079 -21.44537 -19.22469 -18.63785 -17.57392 -17.08774 -16.53127 -16.19229 -16.04820 -15.53761 -15.28994 -15.15840 -14.77436 -14.58121 -14.25006 -13.84150 -13.48708 -13.32210 -13.25952 -13.10614 -12.88990 -12.77058 -12.53497 -12.32802 -12.16900 -12.03575 -11.52045 -11.24608 -11.12697 -10.85670 -9.95609 -9.53351 -9.25505 -9.21027 -8.96033 -8.58581 -6.32448 0.22000 0.60234 0.97570 1.09738 1.28671 1.32748 1.44364 1.46520 2.07949 2.16583 2.74545 2.92842 3.40198 3.73881 4.10533 4.24242 4.24655 4.27724 4.47102 4.54449 4.60588 4.67085 4.76748 4.83582 5.10369 5.11057 5.23807 5.27234 5.30700 5.46297 5.51319 5.63889 5.71180 5.78275 5.95814 6.11271 6.13977 6.26700 6.37008 6.69958 6.96334 7.08312 8.35583 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.014178 B = 0.008769 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.389631 B = 3192.392743 C = 4123.727761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.502 4.502 2 S 1.367 4.633 3 O -0.887 6.887 4 C -0.479 4.479 5 C -0.039 4.039 6 C -0.150 4.150 7 C -0.093 4.093 8 C -0.154 4.154 9 C 0.046 3.954 10 C -0.159 4.159 11 C -0.097 4.097 12 C -0.239 4.239 13 C -0.119 4.119 14 C -0.180 4.180 15 C 0.129 3.871 16 C -0.472 4.472 17 H 0.062 0.938 18 C 0.027 3.973 19 N -0.838 5.838 20 Si 0.977 3.023 21 H -0.259 1.259 22 H -0.264 1.264 23 H -0.262 1.262 24 H 0.060 0.940 25 H 0.108 0.892 26 H 0.142 0.858 27 H 0.186 0.814 28 H 0.164 0.836 29 H 0.140 0.860 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 -16.341 -5.203 17.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 1.564 4.436 3 O -0.882 6.882 4 C -0.575 4.575 5 C -0.057 4.057 6 C -0.168 4.168 7 C -0.110 4.110 8 C -0.174 4.174 9 C 0.045 3.955 10 C -0.161 4.161 11 C -0.115 4.115 12 C -0.258 4.258 13 C -0.138 4.138 14 C -0.199 4.199 15 C 0.126 3.874 16 C -0.502 4.502 17 H 0.080 0.920 18 C -0.186 4.186 19 N -0.465 5.465 20 Si 0.798 3.202 21 H -0.182 1.182 22 H -0.189 1.189 23 H -0.187 1.187 24 H 0.079 0.921 25 H 0.127 0.873 26 H 0.160 0.840 27 H 0.204 0.796 28 H 0.182 0.818 29 H 0.158 0.842 30 H 0.107 0.893 31 H 0.122 0.878 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.357 -15.856 -5.802 17.215 hybrid contribution -0.127 2.230 2.134 3.089 sum -3.484 -13.627 -3.668 14.535 Atomic orbital electron populations 1.27889 1.22194 1.09181 1.06612 1.68167 0.86192 0.98605 0.90598 1.93278 1.74273 1.39054 1.81641 1.28168 1.13488 1.00413 1.15417 1.21340 0.93122 0.92622 0.98657 1.21667 1.01720 1.00845 0.92587 1.21481 0.96625 0.92062 1.00876 1.21369 1.02899 0.96774 0.96339 1.18783 0.91878 0.91543 0.93246 1.18909 0.92949 0.92643 1.11626 1.20697 0.94524 0.95346 1.00931 1.20511 0.97557 0.93671 1.14041 1.20644 0.93611 0.98202 1.01304 1.21030 0.95486 0.97207 1.06214 1.17581 0.92666 0.90968 0.86143 1.19471 0.93838 0.99504 1.37418 0.92007 1.26786 1.05686 0.93896 0.92203 1.69861 1.37590 1.10200 1.28885 0.85236 0.76246 0.79592 0.79133 1.18247 1.18893 1.18698 0.92089 0.87349 0.83984 0.79647 0.81837 0.84238 0.89348 0.87804 0.87113 0.88027 0.88590 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -12.45 10.64 113.37 1.21 -11.24 16 2 S 1.37 40.34 13.78 -56.49 -0.78 39.56 16 3 O -0.89 -42.18 14.17 -148.98 -2.11 -44.29 16 4 C -0.48 -16.29 5.62 22.54 0.13 -16.17 16 5 C -0.04 -0.92 9.74 22.23 0.22 -0.70 16 6 C -0.15 -3.56 10.04 22.34 0.22 -3.34 16 7 C -0.09 -2.86 10.03 22.24 0.22 -2.64 16 8 C -0.15 -6.48 9.69 22.54 0.22 -6.26 16 9 C 0.05 2.07 4.12 -20.05 -0.08 1.99 16 10 C -0.16 -8.43 2.96 -19.61 -0.06 -8.49 16 11 C -0.10 -4.83 8.05 22.45 0.18 -4.64 16 12 C -0.24 -12.04 10.03 22.40 0.22 -11.81 16 13 C -0.12 -6.49 9.96 22.01 0.22 -6.27 16 14 C -0.18 -10.89 8.60 22.46 0.19 -10.70 16 15 C 0.13 7.71 4.79 -21.12 -0.10 7.61 16 16 C -0.47 -28.01 8.36 23.36 0.20 -27.82 16 17 H 0.06 3.68 7.34 -2.91 -0.02 3.66 16 18 C 0.03 1.48 5.26 85.30 0.45 1.93 16 19 N -0.84 -48.01 10.86 21.85 0.24 -47.77 16 20 Si 0.98 42.20 29.57 68.60 2.03 44.22 16 21 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 22 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 H 0.06 1.95 5.10 -2.39 -0.01 1.94 16 25 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 29 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 30 H 0.09 4.08 8.06 -2.91 -0.02 4.06 16 31 H 0.10 4.56 6.35 -2.91 -0.02 4.54 16 32 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 33 H 0.10 4.94 8.06 -2.91 -0.02 4.92 16 34 H 0.10 6.05 6.24 -2.91 -0.02 6.04 16 35 H 0.28 14.73 8.29 -92.71 -0.77 13.96 16 Total: -1.00 -84.75 305.54 3.91 -80.84 By element: Atomic # 1 Polarization: 24.89 SS G_CDS: 1.10 Total: 25.99 kcal Atomic # 6 Polarization: -101.99 SS G_CDS: 3.44 Total: -98.56 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.24 Total: -47.77 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -2.11 Total: -44.29 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 40.34 SS G_CDS: -0.78 Total: 39.56 kcal Total: -84.75 3.91 -80.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241341427.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.825 kcal (2) G-P(sol) polarization free energy of solvation -84.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds