Wall clock time and date at job start Tue Mar 31 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42105 * 109.46592 * 2 1 4 4 C 1.76200 * 103.00219 * 109.05440 * 2 1 3 5 5 C 1.38321 * 119.87821 * 90.00168 * 4 2 1 6 6 C 1.38012 * 120.12145 * 180.02562 * 5 4 2 7 7 C 1.39329 * 119.88177 * 359.97438 * 6 5 4 8 8 C 1.48404 * 120.12216 * 179.97438 * 7 6 5 9 9 C 1.39723 * 120.00325 * 359.97438 * 8 7 6 10 10 C 1.38392 * 120.38171 * 179.97438 * 9 8 7 11 11 C 1.37714 * 120.38140 * 359.97438 * 10 9 8 12 12 C 1.40756 * 119.98923 * 0.02562 * 11 10 9 13 13 C 1.41421 * 120.19080 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99899 * 204.49910 * 13 12 11 15 15 C 1.39937 * 119.99834 * 24.50132 * 13 12 11 16 16 N 1.30828 * 119.99757 * 17.89780 * 15 13 12 17 17 Si 1.86796 * 119.99883 * 197.89502 * 15 13 12 18 18 H 1.48504 * 109.47157 * 90.00105 * 17 15 13 19 19 H 1.48500 * 109.46817 * 209.99933 * 17 15 13 20 20 H 1.48500 * 109.47190 * 330.00203 * 17 15 13 21 21 C 1.38733 * 119.99769 * 180.02562 * 8 7 6 22 22 C 1.39335 * 119.75560 * 0.25200 * 7 6 5 23 23 C 1.38025 * 119.87634 * 359.51514 * 22 7 6 24 24 H 1.08995 * 109.47003 * 310.93993 * 1 2 3 25 25 H 1.08992 * 109.47311 * 70.94524 * 1 2 3 26 26 H 1.09003 * 109.46567 * 190.94281 * 1 2 3 27 27 H 1.08004 * 119.93838 * 359.97438 * 5 4 2 28 28 H 1.08004 * 120.06336 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.80638 * 0.28280 * 9 8 7 30 30 H 1.08001 * 119.80503 * 179.97438 * 10 9 8 31 31 H 1.07999 * 120.00941 * 179.97438 * 11 10 9 32 32 H 0.97003 * 119.99913 * 180.02562 * 16 15 13 33 33 H 1.07999 * 120.19047 * 359.97438 * 21 8 7 34 34 H 1.08001 * 120.05597 * 179.74926 * 22 7 6 35 35 H 1.08001 * 119.93259 * 180.22550 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2105 -0.5605 1.6228 5 6 2.3655 -1.9133 1.8658 6 6 2.6755 -2.3579 3.1350 7 6 2.8328 -1.4413 4.1725 8 6 3.1656 -1.9135 5.5395 9 6 3.3212 -3.2796 5.7882 10 6 3.6320 -3.7285 7.0598 11 6 3.7920 -2.8339 8.0945 12 6 3.6389 -1.4542 7.8618 13 6 3.8017 -0.5318 8.9213 14 1 3.3218 0.4345 8.8746 15 6 4.5847 -0.8713 10.0304 16 7 5.4365 -1.8611 9.9513 17 14 4.4136 0.0889 11.6235 18 1 3.3752 -0.5456 12.4748 19 1 5.7123 0.0882 12.3437 20 1 4.0172 1.4871 11.3186 21 6 3.3211 -0.9986 6.5707 22 6 2.6708 -0.0800 3.9231 23 6 2.3655 0.3539 2.6488 24 1 -0.3633 0.6734 0.7763 25 1 -0.3633 0.3355 -0.9713 26 1 -0.3632 -1.0090 0.1951 27 1 2.2430 -2.6231 1.0610 28 1 2.7960 -3.4145 3.3239 29 1 3.2031 -3.9888 4.9823 30 1 3.7498 -4.7866 7.2417 31 1 4.0342 -3.1909 9.0846 32 1 5.9790 -2.0967 10.7202 33 1 3.2011 0.0580 6.3820 34 1 2.7876 0.6344 4.7245 35 1 2.2434 1.4091 2.4537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241480045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:54 Heat of formation + Delta-G solvation = -0.774338 kcal Electronic energy + Delta-G solvation = -18724.178983 eV Core-core repulsion = 15777.958089 eV Total energy + Delta-G solvation = -2946.220894 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.10843 -37.22964 -35.71073 -33.91348 -31.77538 -30.94332 -29.84672 -28.95261 -27.94267 -25.44083 -22.97876 -22.64533 -20.29698 -20.19590 -18.09812 -17.45555 -16.48953 -15.48588 -15.11603 -15.08095 -14.85145 -14.71885 -13.78281 -13.57119 -13.37814 -13.32344 -13.04555 -12.83326 -12.64747 -12.46192 -11.94017 -11.71286 -11.48394 -11.36321 -11.12636 -11.06040 -10.63519 -10.44976 -10.17726 -9.81742 -9.47660 -9.36529 -9.02583 -8.71790 -8.43318 -7.61398 -7.14457 -6.84677 -4.46146 0.94549 1.66958 1.88972 2.63872 2.71741 2.95947 3.03019 3.06440 3.14891 3.84287 3.87329 4.13103 4.59744 5.03348 5.05924 5.13372 5.17584 5.35760 5.59553 5.64948 5.73527 5.83116 6.02917 6.08922 6.29792 6.35835 6.45962 6.55518 6.73081 6.81337 6.93096 7.10409 7.24027 7.24888 7.44210 7.71881 7.90146 7.92886 8.14491 8.50517 8.78142 8.82716 10.10380 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.003348 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.510334 B = 8360.063597 C = 9021.342760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.499 4.499 2 S 1.328 4.672 3 O -0.865 6.865 4 C -0.483 4.483 5 C -0.044 4.044 6 C -0.142 4.142 7 C 0.031 3.969 8 C -0.054 4.054 9 C -0.215 4.215 10 C -0.109 4.109 11 C -0.150 4.150 12 C 0.105 3.895 13 C -0.464 4.464 14 H 0.078 0.922 15 C 0.076 3.924 16 N -0.793 5.793 17 Si 0.909 3.091 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.198 4.198 22 C -0.138 4.138 23 C -0.050 4.050 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.109 0.891 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.120 0.880 32 H 0.282 0.718 33 H 0.098 0.902 34 H 0.128 0.872 35 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.157 -3.093 -14.710 16.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.655 4.655 2 S 1.526 4.474 3 O -0.860 6.860 4 C -0.581 4.581 5 C -0.063 4.063 6 C -0.161 4.161 7 C 0.031 3.969 8 C -0.054 4.054 9 C -0.234 4.234 10 C -0.128 4.128 11 C -0.169 4.169 12 C 0.103 3.897 13 C -0.494 4.494 14 H 0.097 0.903 15 C -0.142 4.142 16 N -0.419 5.419 17 Si 0.734 3.266 18 H -0.192 1.192 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.217 4.217 22 C -0.157 4.157 23 C -0.069 4.069 24 H 0.098 0.902 25 H 0.119 0.881 26 H 0.128 0.872 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.367 -2.916 -15.314 16.487 hybrid contribution -0.804 1.629 2.663 3.223 sum -6.171 -1.288 -12.651 14.135 Atomic orbital electron populations 1.27782 1.23150 1.07784 1.06820 1.69170 0.85673 0.99390 0.93149 1.93087 1.73066 1.37339 1.82530 1.27286 1.15598 0.99701 1.15531 1.20664 0.95650 0.93262 0.96747 1.21379 1.02239 0.99982 0.92531 1.19391 0.91207 0.92724 0.93583 1.18361 1.02831 0.93877 0.90372 1.20440 1.12820 0.93512 0.96665 1.20650 1.00847 0.97752 0.93516 1.21473 1.04031 0.92917 0.98526 1.17555 0.88531 0.92538 0.91095 1.19581 1.26784 1.01816 1.01188 0.90341 1.25903 0.93004 0.94930 1.00327 1.69812 1.15638 1.25168 1.31241 0.86290 0.78521 0.80822 0.80994 1.19208 1.20250 1.18588 1.21137 1.11033 0.96948 0.92623 1.21429 1.01579 0.95816 0.96871 1.20950 0.94712 0.98931 0.92349 0.90154 0.88069 0.87235 0.85138 0.85234 0.88799 0.88951 0.86191 0.90746 0.88438 0.85402 0.86135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.18 10.70 101.05 1.08 -3.10 16 2 S 1.33 12.79 14.18 -107.50 -1.52 11.27 16 3 O -0.86 -14.16 16.89 -35.23 -0.59 -14.76 16 4 C -0.48 -6.47 5.61 -39.52 -0.22 -6.69 16 5 C -0.04 -0.53 9.74 -39.63 -0.39 -0.92 16 6 C -0.14 -2.20 9.43 -39.26 -0.37 -2.57 16 7 C 0.03 0.59 5.88 -104.90 -0.62 -0.03 16 8 C -0.05 -1.20 5.87 -104.97 -0.62 -1.81 16 9 C -0.22 -4.60 9.44 -38.97 -0.37 -4.97 16 10 C -0.11 -2.47 10.01 -39.72 -0.40 -2.86 16 11 C -0.15 -3.80 8.69 -38.82 -0.34 -4.14 16 12 C 0.11 2.75 5.57 -106.86 -0.60 2.16 16 13 C -0.46 -12.16 9.05 -37.73 -0.34 -12.50 16 14 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 15 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 16 N -0.79 -20.17 10.96 55.55 0.61 -19.56 16 17 Si 0.91 18.47 29.60 -169.99 -5.03 13.43 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.94 16 19 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 21 C -0.20 -4.80 9.17 -38.53 -0.35 -5.15 16 22 C -0.14 -2.52 9.42 -39.25 -0.37 -2.89 16 23 C -0.05 -0.83 9.43 -39.63 -0.37 -1.21 16 24 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 28 H 0.13 1.80 6.19 -52.48 -0.32 1.48 16 29 H 0.09 1.72 6.18 -52.49 -0.32 1.39 16 30 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.12 3.12 6.15 -52.49 -0.32 2.80 16 32 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 33 H 0.10 2.24 6.19 -52.49 -0.33 1.92 16 34 H 0.13 2.34 6.20 -52.49 -0.33 2.02 16 35 H 0.12 2.02 7.44 -52.49 -0.39 1.63 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -33.04 311.18 -9.88 -42.92 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -3.68 Total: 6.90 kcal Atomic # 6 Polarization: -40.54 SS G_CDS: -4.35 Total: -44.89 kcal Atomic # 7 Polarization: -20.17 SS G_CDS: 0.61 Total: -19.56 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.59 Total: -14.76 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 16 Polarization: 12.79 SS G_CDS: -1.52 Total: 11.27 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.04 -9.88 -42.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241480045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.147 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds