Wall clock time and date at job start Tue Mar 31 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42105 * 109.46592 * 2 1 4 4 C 1.76200 * 103.00219 * 109.05440 * 2 1 3 5 5 C 1.38321 * 119.87821 * 90.00168 * 4 2 1 6 6 C 1.38012 * 120.12145 * 180.02562 * 5 4 2 7 7 C 1.39329 * 119.88177 * 359.97438 * 6 5 4 8 8 C 1.48404 * 120.12216 * 179.97438 * 7 6 5 9 9 C 1.39723 * 120.00325 * 359.97438 * 8 7 6 10 10 C 1.38392 * 120.38171 * 179.97438 * 9 8 7 11 11 C 1.37714 * 120.38140 * 359.97438 * 10 9 8 12 12 C 1.40756 * 119.98923 * 0.02562 * 11 10 9 13 13 C 1.41421 * 120.19080 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99899 * 204.49910 * 13 12 11 15 15 C 1.39937 * 119.99834 * 24.50132 * 13 12 11 16 16 N 1.30828 * 119.99757 * 17.89780 * 15 13 12 17 17 Si 1.86796 * 119.99883 * 197.89502 * 15 13 12 18 18 H 1.48504 * 109.47157 * 90.00105 * 17 15 13 19 19 H 1.48500 * 109.46817 * 209.99933 * 17 15 13 20 20 H 1.48500 * 109.47190 * 330.00203 * 17 15 13 21 21 C 1.38733 * 119.99769 * 180.02562 * 8 7 6 22 22 C 1.39335 * 119.75560 * 0.25200 * 7 6 5 23 23 C 1.38025 * 119.87634 * 359.51514 * 22 7 6 24 24 H 1.08995 * 109.47003 * 310.93993 * 1 2 3 25 25 H 1.08992 * 109.47311 * 70.94524 * 1 2 3 26 26 H 1.09003 * 109.46567 * 190.94281 * 1 2 3 27 27 H 1.08004 * 119.93838 * 359.97438 * 5 4 2 28 28 H 1.08004 * 120.06336 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.80638 * 0.28280 * 9 8 7 30 30 H 1.08001 * 119.80503 * 179.97438 * 10 9 8 31 31 H 1.07999 * 120.00941 * 179.97438 * 11 10 9 32 32 H 0.97003 * 119.99913 * 180.02562 * 16 15 13 33 33 H 1.07999 * 120.19047 * 359.97438 * 21 8 7 34 34 H 1.08001 * 120.05597 * 179.74926 * 22 7 6 35 35 H 1.08001 * 119.93259 * 180.22550 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2105 -0.5605 1.6228 5 6 2.3655 -1.9133 1.8658 6 6 2.6755 -2.3579 3.1350 7 6 2.8328 -1.4413 4.1725 8 6 3.1656 -1.9135 5.5395 9 6 3.3212 -3.2796 5.7882 10 6 3.6320 -3.7285 7.0598 11 6 3.7920 -2.8339 8.0945 12 6 3.6389 -1.4542 7.8618 13 6 3.8017 -0.5318 8.9213 14 1 3.3218 0.4345 8.8746 15 6 4.5847 -0.8713 10.0304 16 7 5.4365 -1.8611 9.9513 17 14 4.4136 0.0889 11.6235 18 1 3.3752 -0.5456 12.4748 19 1 5.7123 0.0882 12.3437 20 1 4.0172 1.4871 11.3186 21 6 3.3211 -0.9986 6.5707 22 6 2.6708 -0.0800 3.9231 23 6 2.3655 0.3539 2.6488 24 1 -0.3633 0.6734 0.7763 25 1 -0.3633 0.3355 -0.9713 26 1 -0.3632 -1.0090 0.1951 27 1 2.2430 -2.6231 1.0610 28 1 2.7960 -3.4145 3.3239 29 1 3.2031 -3.9888 4.9823 30 1 3.7498 -4.7866 7.2417 31 1 4.0342 -3.1909 9.0846 32 1 5.9790 -2.0967 10.7202 33 1 3.2011 0.0580 6.3820 34 1 2.7876 0.6344 4.7245 35 1 2.2434 1.4091 2.4537 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241480045.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:54 Heat of formation + Delta-G solvation = -21.071787 kcal Electronic energy + Delta-G solvation = -18725.059146 eV Core-core repulsion = 15777.958089 eV Total energy + Delta-G solvation = -2947.101057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49745 -38.87619 -36.84587 -35.71551 -33.27884 -32.33635 -31.52617 -29.82066 -29.33405 -27.29548 -24.42118 -24.03080 -21.97735 -21.80825 -19.34572 -18.97532 -17.72669 -17.16460 -16.63173 -16.44867 -16.17967 -15.74883 -15.07298 -14.94839 -14.85489 -14.64732 -14.42998 -14.14834 -13.97282 -13.56012 -13.43681 -13.14380 -13.04936 -12.86539 -12.62293 -12.56135 -12.29443 -11.98368 -11.60622 -11.28824 -11.21871 -11.12178 -10.52002 -9.92574 -9.48098 -9.42297 -8.79956 -8.68928 -6.42410 -0.32271 0.43949 0.91630 0.93699 1.25488 1.33649 1.46590 1.49170 1.86617 2.16412 2.58235 2.86381 3.06379 3.70643 3.81342 3.90262 4.04982 4.34916 4.38760 4.42097 4.50227 4.60226 4.62576 4.88514 4.93232 5.02838 5.07297 5.13255 5.21368 5.29380 5.30654 5.33945 5.56568 5.65519 5.95495 6.00220 6.00904 6.11147 6.32218 6.61108 6.86902 6.93731 8.27770 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.030846 B = 0.003348 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.510334 B = 8360.063597 C = 9021.342760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.412 4.588 3 O -0.931 6.931 4 C -0.480 4.480 5 C -0.024 4.024 6 C -0.138 4.138 7 C -0.008 4.008 8 C -0.051 4.051 9 C -0.210 4.210 10 C -0.109 4.109 11 C -0.181 4.181 12 C 0.077 3.923 13 C -0.507 4.507 14 H 0.069 0.931 15 C 0.037 3.963 16 N -0.824 5.824 17 Si 0.982 3.018 18 H -0.259 1.259 19 H -0.265 1.265 20 H -0.263 1.263 21 C -0.228 4.228 22 C -0.157 4.157 23 C -0.073 4.073 24 H 0.055 0.945 25 H 0.124 0.876 26 H 0.143 0.857 27 H 0.201 0.799 28 H 0.153 0.847 29 H 0.136 0.864 30 H 0.122 0.878 31 H 0.104 0.896 32 H 0.290 0.710 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.345 -5.320 -17.836 20.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.610 4.390 3 O -0.927 6.927 4 C -0.575 4.575 5 C -0.042 4.042 6 C -0.157 4.157 7 C -0.008 4.008 8 C -0.051 4.051 9 C -0.229 4.229 10 C -0.127 4.127 11 C -0.200 4.200 12 C 0.074 3.926 13 C -0.537 4.537 14 H 0.087 0.913 15 C -0.178 4.178 16 N -0.450 5.450 17 Si 0.803 3.197 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.187 1.187 21 C -0.248 4.248 22 C -0.176 4.176 23 C -0.093 4.093 24 H 0.075 0.925 25 H 0.143 0.857 26 H 0.161 0.839 27 H 0.218 0.782 28 H 0.171 0.829 29 H 0.154 0.846 30 H 0.140 0.860 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.531 -5.156 -18.428 20.219 hybrid contribution -0.575 2.297 3.276 4.041 sum -7.106 -2.860 -15.152 16.978 Atomic orbital electron populations 1.27774 1.20901 1.09487 1.07427 1.68368 0.85651 0.96122 0.88874 1.92969 1.75934 1.41066 1.82768 1.27990 1.13029 1.00168 1.16320 1.21396 0.92076 0.93575 0.97158 1.21748 1.00854 1.00368 0.92724 1.19353 0.94760 0.93507 0.93178 1.18739 1.00732 0.94070 0.91562 1.20887 1.10968 0.93816 0.97245 1.21008 0.99494 0.98855 0.93357 1.21438 1.06540 0.93127 0.98929 1.17894 0.89351 0.93367 0.91939 1.19795 1.28702 1.02027 1.03127 0.91291 1.26717 0.91995 0.95941 1.03118 1.69856 1.16173 1.26485 1.32475 0.85207 0.78996 0.79031 0.76484 1.18363 1.18900 1.18714 1.21259 1.12950 0.97372 0.93191 1.21349 1.03086 0.95842 0.97329 1.20965 0.96351 0.99223 0.92711 0.92526 0.85748 0.83891 0.78206 0.82937 0.84590 0.85961 0.87763 0.89960 0.89287 0.87735 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -6.07 10.70 113.37 1.21 -4.85 16 2 S 1.41 21.91 14.18 -56.49 -0.80 21.11 16 3 O -0.93 -29.16 16.89 -148.98 -2.52 -31.68 16 4 C -0.48 -11.35 5.61 22.31 0.13 -11.23 16 5 C -0.02 -0.45 9.74 22.24 0.22 -0.23 16 6 C -0.14 -3.74 9.43 22.48 0.21 -3.53 16 7 C -0.01 -0.30 5.88 -20.04 -0.12 -0.41 16 8 C -0.05 -2.29 5.87 -20.09 -0.12 -2.41 16 9 C -0.21 -8.73 9.44 22.67 0.21 -8.51 16 10 C -0.11 -4.91 10.01 22.18 0.22 -4.68 16 11 C -0.18 -9.59 8.69 22.76 0.20 -9.39 16 12 C 0.08 4.29 5.57 -21.32 -0.12 4.17 16 13 C -0.51 -28.56 9.05 23.47 0.21 -28.35 16 14 H 0.07 3.82 7.91 -2.91 -0.02 3.79 16 15 C 0.04 1.93 5.14 85.25 0.44 2.37 16 16 N -0.82 -43.77 10.96 21.82 0.24 -43.53 16 17 Si 0.98 39.33 29.60 68.60 2.03 41.36 16 18 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 20 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 21 C -0.23 -11.88 9.17 22.95 0.21 -11.67 16 22 C -0.16 -6.03 9.42 22.48 0.21 -5.82 16 23 C -0.07 -2.46 9.43 22.24 0.21 -2.25 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.20 1.03 8.06 -2.91 -0.02 1.00 16 28 H 0.15 3.39 6.19 -2.91 -0.02 3.37 16 29 H 0.14 4.41 6.18 -2.91 -0.02 4.39 16 30 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 31 H 0.10 5.74 6.15 -2.91 -0.02 5.72 16 32 H 0.29 13.81 8.30 -92.71 -0.77 13.04 16 33 H 0.09 4.58 6.19 -2.91 -0.02 4.56 16 34 H 0.10 4.31 6.20 -2.91 -0.02 4.30 16 35 H 0.11 3.78 7.44 -2.91 -0.02 3.75 16 Total: -1.00 -79.68 311.18 3.39 -76.29 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 1.11 Total: 23.25 kcal Atomic # 6 Polarization: -90.12 SS G_CDS: 3.33 Total: -86.79 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: 0.24 Total: -43.53 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -2.52 Total: -31.68 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Atomic # 16 Polarization: 21.91 SS G_CDS: -0.80 Total: 21.11 kcal Total: -79.68 3.39 -76.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241480045.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.214 kcal (2) G-P(sol) polarization free energy of solvation -79.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds