Wall clock time and date at job start Tue Mar 31 2020 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42103 * 109.46912 * 2 1 4 4 C 1.76195 * 103.00090 * 109.05940 * 2 1 3 5 5 C 1.38394 * 119.85504 * 90.00562 * 4 2 1 6 6 C 1.37930 * 120.14273 * 179.97438 * 5 4 2 7 7 C 1.39600 * 119.85632 * 0.02562 * 6 5 4 8 8 C 1.47992 * 120.14387 * 179.97438 * 7 6 5 9 9 C 1.39940 * 119.88217 * 359.72769 * 8 7 6 10 10 C 1.36256 * 120.12078 * 179.72010 * 9 8 7 11 11 C 1.40933 * 119.87565 * 0.55067 * 10 9 8 12 12 C 1.41023 * 120.11297 * 179.70069 * 11 10 9 13 13 H 1.08004 * 119.99457 * 155.05075 * 12 11 10 14 14 C 1.40014 * 120.00303 * 335.04423 * 12 11 10 15 15 N 1.30796 * 120.00113 * 342.14019 * 14 12 11 16 16 Si 1.86796 * 119.99743 * 162.14215 * 14 12 11 17 17 H 1.48497 * 109.47490 * 94.65528 * 16 14 12 18 18 H 1.48506 * 109.46841 * 214.65527 * 16 14 12 19 19 H 1.48497 * 109.47457 * 334.65253 * 16 14 12 20 20 C 1.40928 * 119.76571 * 359.72477 * 11 10 9 21 21 C 1.36256 * 119.87761 * 359.97438 * 20 11 10 22 22 C 1.39597 * 119.71128 * 359.95996 * 7 6 5 23 23 C 1.37935 * 119.85331 * 0.03971 * 22 7 6 24 24 H 1.08995 * 109.46945 * 310.94127 * 1 2 3 25 25 H 1.09000 * 109.47139 * 70.94527 * 1 2 3 26 26 H 1.09003 * 109.46939 * 190.94216 * 1 2 3 27 27 H 1.08003 * 119.92691 * 359.97438 * 5 4 2 28 28 H 1.08004 * 120.06989 * 179.74196 * 6 5 4 29 29 H 1.07995 * 119.93666 * 359.97438 * 9 8 7 30 30 H 1.07998 * 120.05864 * 180.25573 * 10 9 8 31 31 H 0.96992 * 119.99676 * 179.97438 * 15 14 12 32 32 H 1.08003 * 120.06109 * 179.97438 * 20 11 10 33 33 H 1.08001 * 119.94017 * 179.97438 * 21 20 11 34 34 H 1.08006 * 120.07100 * 180.02562 * 22 7 6 35 35 H 1.08003 * 119.92655 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3655 -1.9143 1.8652 6 6 2.6763 -2.3596 3.1331 7 6 2.8339 -1.4417 4.1729 8 6 3.1668 -1.9126 5.5358 9 6 3.3182 -3.2816 5.7829 10 6 3.6303 -3.7201 7.0347 11 6 3.7892 -2.7929 8.0840 12 6 4.1060 -3.2417 9.3829 13 1 4.6119 -2.5830 10.0733 14 6 3.7647 -4.5410 9.7773 15 7 2.8669 -5.2140 9.1051 16 14 4.5915 -5.3134 11.2637 17 1 3.7475 -5.0992 12.4666 18 1 4.7638 -6.7702 11.0328 19 1 5.9205 -4.6848 11.4732 20 6 3.6300 -1.4157 7.8309 21 6 3.3239 -0.9875 6.5741 22 6 2.6764 -0.0776 3.9215 23 6 2.3655 0.3546 2.6490 24 1 -0.3633 0.6734 0.7762 25 1 -0.3633 0.3355 -0.9713 26 1 -0.3633 -1.0090 0.1951 27 1 2.2429 -2.6235 1.0599 28 1 2.7930 -3.4166 3.3219 29 1 3.1914 -3.9916 4.9791 30 1 3.7509 -4.7767 7.2233 31 1 2.6308 -6.1142 9.3782 32 1 3.7503 -0.7010 8.6316 33 1 3.2013 0.0676 6.3790 34 1 2.7974 0.6377 4.7216 35 1 2.2438 1.4097 2.4530 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241482441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:00 Heat of formation + Delta-G solvation = -3.021762 kcal Electronic energy + Delta-G solvation = -18650.457485 eV Core-core repulsion = 15704.139135 eV Total energy + Delta-G solvation = -2946.318350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.94716 -37.30684 -35.59657 -34.11955 -31.66135 -30.82689 -29.51823 -28.99496 -28.59617 -25.40946 -22.74849 -22.45042 -20.43490 -20.08028 -18.02967 -17.51119 -16.63745 -15.61630 -15.36589 -14.83531 -14.70717 -14.52254 -13.69040 -13.51677 -13.28254 -13.26302 -12.99485 -12.76345 -12.58330 -12.23042 -12.13544 -11.83856 -11.62091 -11.31827 -11.17103 -10.91269 -10.73703 -10.65503 -10.04629 -9.87187 -9.55659 -9.44221 -8.88340 -8.58644 -8.32003 -7.75876 -7.23326 -7.04143 -4.57042 1.09965 1.83856 2.01082 2.62024 2.84078 2.91567 2.96295 2.97327 3.09453 3.70805 3.94027 4.16140 4.56500 5.13036 5.17599 5.23421 5.30182 5.52257 5.59973 5.74962 5.88699 5.91367 6.07411 6.09127 6.34680 6.44754 6.63734 6.68442 6.76419 6.80464 6.87757 7.04838 7.22784 7.38002 7.39341 7.72050 7.80772 7.94672 8.01996 8.35946 8.58029 8.70824 9.84532 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.050720 B = 0.002992 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.919472 B = 9354.709970 C = 9678.849239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.500 4.500 2 S 1.326 4.674 3 O -0.870 6.870 4 C -0.506 4.506 5 C -0.033 4.033 6 C -0.167 4.167 7 C 0.065 3.935 8 C -0.221 4.221 9 C -0.068 4.068 10 C -0.174 4.174 11 C 0.122 3.878 12 C -0.439 4.439 13 H 0.084 0.916 14 C 0.073 3.927 15 N -0.772 5.772 16 Si 0.913 3.087 17 H -0.267 1.267 18 H -0.272 1.272 19 H -0.257 1.257 20 C -0.232 4.232 21 C -0.056 4.056 22 C -0.167 4.167 23 C -0.041 4.041 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.108 0.892 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.287 0.713 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.119 0.881 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.371 -0.159 -12.399 12.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.524 4.476 3 O -0.866 6.866 4 C -0.605 4.605 5 C -0.053 4.053 6 C -0.186 4.186 7 C 0.065 3.935 8 C -0.222 4.222 9 C -0.086 4.086 10 C -0.193 4.193 11 C 0.119 3.881 12 C -0.467 4.467 13 H 0.102 0.898 14 C -0.148 4.148 15 N -0.395 5.395 16 Si 0.737 3.263 17 H -0.192 1.192 18 H -0.197 1.197 19 H -0.181 1.181 20 C -0.251 4.251 21 C -0.074 4.074 22 C -0.186 4.186 23 C -0.060 4.060 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.127 0.873 27 H 0.144 0.856 28 H 0.143 0.857 29 H 0.113 0.887 30 H 0.137 0.863 31 H 0.098 0.902 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.137 0.863 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.920 -0.108 -13.133 13.273 hybrid contribution -0.730 0.853 2.584 2.817 sum -2.650 0.744 -10.549 10.902 Atomic orbital electron populations 1.27797 1.23528 1.07656 1.06578 1.69026 0.85520 0.99241 0.93783 1.93062 1.73070 1.37445 1.82987 1.27036 1.18599 0.99635 1.15191 1.20589 0.94903 0.93137 0.96622 1.21291 1.04962 0.99694 0.92695 1.19216 0.88787 0.92329 0.93175 1.18104 1.19255 0.93571 0.91241 1.20541 0.98137 0.93484 0.96486 1.21003 1.06863 1.00015 0.91461 1.17772 0.86315 0.90998 0.93058 1.19796 1.31347 0.97308 0.98241 0.89765 1.26083 0.93184 0.96904 0.98668 1.69808 1.21327 1.11589 1.36787 0.86202 0.80838 0.78740 0.80557 1.19228 1.19672 1.18094 1.20709 1.12642 0.95829 0.95908 1.20446 0.97169 0.96837 0.92976 1.21250 1.05101 0.95641 0.96638 1.20840 0.94187 0.98514 0.92443 0.90313 0.88274 0.87340 0.85597 0.85727 0.88729 0.86265 0.90219 0.88580 0.88877 0.86272 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -4.68 10.70 101.05 1.08 -3.60 16 2 S 1.33 14.04 14.18 -107.50 -1.52 12.52 16 3 O -0.87 -14.94 16.88 -35.23 -0.59 -15.53 16 4 C -0.51 -7.28 5.62 -39.47 -0.22 -7.50 16 5 C -0.03 -0.44 9.73 -39.64 -0.39 -0.83 16 6 C -0.17 -2.77 9.43 -39.19 -0.37 -3.14 16 7 C 0.07 1.27 5.88 -104.88 -0.62 0.65 16 8 C -0.22 -4.84 5.90 -104.63 -0.62 -5.46 16 9 C -0.07 -1.52 9.36 -39.66 -0.37 -1.89 16 10 C -0.17 -4.27 8.63 -39.28 -0.34 -4.61 16 11 C 0.12 3.07 5.57 -106.80 -0.59 2.48 16 12 C -0.44 -10.87 9.03 -37.86 -0.34 -11.21 16 13 H 0.08 1.99 7.91 -52.48 -0.42 1.57 16 14 C 0.07 1.68 5.13 -17.33 -0.09 1.60 16 15 N -0.77 -18.46 10.97 55.55 0.61 -17.85 16 16 Si 0.91 17.16 29.60 -169.99 -5.03 12.13 16 17 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 18 H -0.27 -4.99 7.11 56.52 0.40 -4.58 16 19 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 20 C -0.23 -5.47 9.73 -39.28 -0.38 -5.85 16 21 C -0.06 -1.24 9.36 -39.66 -0.37 -1.61 16 22 C -0.17 -3.10 9.43 -39.19 -0.37 -3.46 16 23 C -0.04 -0.70 9.43 -39.64 -0.37 -1.08 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.10 0.76 8.14 -51.92 -0.42 0.34 16 26 H 0.11 0.81 8.14 -51.92 -0.42 0.38 16 27 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 28 H 0.12 1.91 6.18 -52.48 -0.32 1.59 16 29 H 0.09 1.86 6.18 -52.49 -0.32 1.54 16 30 H 0.12 2.97 6.18 -52.49 -0.32 2.65 16 31 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 32 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 33 H 0.09 1.84 6.18 -52.49 -0.32 1.52 16 34 H 0.12 2.12 6.18 -52.48 -0.32 1.79 16 35 H 0.12 2.00 7.44 -52.48 -0.39 1.61 16 LS Contribution 310.95 15.07 4.69 4.69 Total: -1.00 -31.64 310.95 -9.89 -41.53 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -3.68 Total: 8.06 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: -4.36 Total: -45.54 kcal Atomic # 7 Polarization: -18.46 SS G_CDS: 0.61 Total: -17.85 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.59 Total: -15.53 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Atomic # 16 Polarization: 14.04 SS G_CDS: -1.52 Total: 12.52 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.64 -9.89 -41.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241482441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.507 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds