Wall clock time and date at job start Tue Mar 31 2020 05:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42103 * 109.46912 * 2 1 4 4 C 1.76195 * 103.00090 * 109.05940 * 2 1 3 5 5 C 1.38394 * 119.85504 * 90.00562 * 4 2 1 6 6 C 1.37930 * 120.14273 * 179.97438 * 5 4 2 7 7 C 1.39600 * 119.85632 * 0.02562 * 6 5 4 8 8 C 1.47992 * 120.14387 * 179.97438 * 7 6 5 9 9 C 1.39940 * 119.88217 * 359.72769 * 8 7 6 10 10 C 1.36256 * 120.12078 * 179.72010 * 9 8 7 11 11 C 1.40933 * 119.87565 * 0.55067 * 10 9 8 12 12 C 1.41023 * 120.11297 * 179.70069 * 11 10 9 13 13 H 1.08004 * 119.99457 * 155.05075 * 12 11 10 14 14 C 1.40014 * 120.00303 * 335.04423 * 12 11 10 15 15 N 1.30796 * 120.00113 * 342.14019 * 14 12 11 16 16 Si 1.86796 * 119.99743 * 162.14215 * 14 12 11 17 17 H 1.48497 * 109.47490 * 94.65528 * 16 14 12 18 18 H 1.48506 * 109.46841 * 214.65527 * 16 14 12 19 19 H 1.48497 * 109.47457 * 334.65253 * 16 14 12 20 20 C 1.40928 * 119.76571 * 359.72477 * 11 10 9 21 21 C 1.36256 * 119.87761 * 359.97438 * 20 11 10 22 22 C 1.39597 * 119.71128 * 359.95996 * 7 6 5 23 23 C 1.37935 * 119.85331 * 0.03971 * 22 7 6 24 24 H 1.08995 * 109.46945 * 310.94127 * 1 2 3 25 25 H 1.09000 * 109.47139 * 70.94527 * 1 2 3 26 26 H 1.09003 * 109.46939 * 190.94216 * 1 2 3 27 27 H 1.08003 * 119.92691 * 359.97438 * 5 4 2 28 28 H 1.08004 * 120.06989 * 179.74196 * 6 5 4 29 29 H 1.07995 * 119.93666 * 359.97438 * 9 8 7 30 30 H 1.07998 * 120.05864 * 180.25573 * 10 9 8 31 31 H 0.96992 * 119.99676 * 179.97438 * 15 14 12 32 32 H 1.08003 * 120.06109 * 179.97438 * 20 11 10 33 33 H 1.08001 * 119.94017 * 179.97438 * 21 20 11 34 34 H 1.08006 * 120.07100 * 180.02562 * 22 7 6 35 35 H 1.08003 * 119.92655 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2876 1.3398 0.0000 4 6 2.2104 -0.5606 1.6227 5 6 2.3655 -1.9143 1.8652 6 6 2.6763 -2.3596 3.1331 7 6 2.8339 -1.4417 4.1729 8 6 3.1668 -1.9126 5.5358 9 6 3.3182 -3.2816 5.7829 10 6 3.6303 -3.7201 7.0347 11 6 3.7892 -2.7929 8.0840 12 6 4.1060 -3.2417 9.3829 13 1 4.6119 -2.5830 10.0733 14 6 3.7647 -4.5410 9.7773 15 7 2.8669 -5.2140 9.1051 16 14 4.5915 -5.3134 11.2637 17 1 3.7475 -5.0992 12.4666 18 1 4.7638 -6.7702 11.0328 19 1 5.9205 -4.6848 11.4732 20 6 3.6300 -1.4157 7.8309 21 6 3.3239 -0.9875 6.5741 22 6 2.6764 -0.0776 3.9215 23 6 2.3655 0.3546 2.6490 24 1 -0.3633 0.6734 0.7762 25 1 -0.3633 0.3355 -0.9713 26 1 -0.3633 -1.0090 0.1951 27 1 2.2429 -2.6235 1.0599 28 1 2.7930 -3.4166 3.3219 29 1 3.1914 -3.9916 4.9791 30 1 3.7509 -4.7767 7.2233 31 1 2.6308 -6.1142 9.3782 32 1 3.7503 -0.7010 8.6316 33 1 3.2013 0.0676 6.3790 34 1 2.7974 0.6377 4.7216 35 1 2.2438 1.4097 2.4530 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241482441.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:00 Heat of formation + Delta-G solvation = -21.522275 kcal Electronic energy + Delta-G solvation = -18651.259727 eV Core-core repulsion = 15704.139135 eV Total energy + Delta-G solvation = -2947.120592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.41975 -38.91811 -36.80551 -35.81034 -33.21481 -32.24376 -31.17004 -30.44526 -29.54252 -27.07270 -24.20409 -23.96417 -22.05576 -21.68908 -19.49282 -18.93964 -17.90016 -17.17221 -16.78321 -16.19159 -16.02060 -15.72124 -15.02937 -14.94251 -14.74974 -14.65553 -14.31993 -14.06308 -13.96161 -13.71602 -13.41775 -13.32566 -12.97087 -12.79700 -12.71477 -12.46952 -12.17668 -12.09951 -11.61710 -11.22386 -11.19931 -11.14372 -10.39299 -9.86942 -9.55975 -9.39470 -8.90154 -8.72406 -6.39698 -0.22442 0.52529 0.89632 1.11841 1.18394 1.37198 1.49166 1.54396 1.90472 2.15494 2.55169 2.92532 3.11387 3.71383 3.88246 4.05277 4.12210 4.30084 4.36575 4.42479 4.52599 4.56871 4.64062 4.89948 4.99973 5.03361 5.12020 5.20846 5.22115 5.29827 5.35292 5.38863 5.58411 5.67513 5.90827 5.99940 6.14245 6.20387 6.24241 6.56206 6.78767 6.90994 8.18231 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.050720 B = 0.002992 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.919472 B = 9354.709970 C = 9678.849239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.498 4.498 2 S 1.408 4.592 3 O -0.933 6.933 4 C -0.500 4.500 5 C -0.018 4.018 6 C -0.168 4.168 7 C 0.029 3.971 8 C -0.216 4.216 9 C -0.073 4.073 10 C -0.194 4.194 11 C 0.090 3.910 12 C -0.482 4.482 13 H 0.081 0.919 14 C 0.036 3.964 15 N -0.807 5.807 16 Si 0.986 3.014 17 H -0.261 1.261 18 H -0.261 1.261 19 H -0.259 1.259 20 C -0.250 4.250 21 C -0.069 4.069 22 C -0.176 4.176 23 C -0.065 4.065 24 H 0.055 0.945 25 H 0.123 0.877 26 H 0.139 0.861 27 H 0.191 0.809 28 H 0.139 0.861 29 H 0.122 0.878 30 H 0.109 0.891 31 H 0.295 0.705 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.323 -1.270 -15.578 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.656 4.656 2 S 1.606 4.394 3 O -0.929 6.929 4 C -0.596 4.596 5 C -0.037 4.037 6 C -0.187 4.187 7 C 0.028 3.972 8 C -0.217 4.217 9 C -0.091 4.091 10 C -0.213 4.213 11 C 0.088 3.912 12 C -0.510 4.510 13 H 0.099 0.901 14 C -0.181 4.181 15 N -0.431 5.431 16 Si 0.806 3.194 17 H -0.186 1.186 18 H -0.185 1.185 19 H -0.182 1.182 20 C -0.269 4.269 21 C -0.087 4.087 22 C -0.195 4.195 23 C -0.084 4.084 24 H 0.075 0.925 25 H 0.142 0.858 26 H 0.157 0.843 27 H 0.208 0.792 28 H 0.156 0.844 29 H 0.140 0.860 30 H 0.127 0.873 31 H 0.106 0.894 32 H 0.117 0.883 33 H 0.128 0.872 34 H 0.131 0.869 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.853 -1.210 -16.301 16.593 hybrid contribution -0.621 1.385 3.096 3.448 sum -3.474 0.175 -13.205 13.655 Atomic orbital electron populations 1.27781 1.21260 1.09248 1.07328 1.68316 0.85504 0.96062 0.89498 1.92949 1.75826 1.41002 1.83080 1.27786 1.15541 0.99981 1.16295 1.21253 0.91838 0.93637 0.96951 1.21638 1.03830 0.99964 0.93283 1.19232 0.91875 0.93276 0.92786 1.18462 1.17176 0.93374 0.92657 1.20807 0.97519 0.94346 0.96444 1.21012 1.08443 0.99479 0.92403 1.18098 0.87470 0.91810 0.93865 1.19978 1.33610 0.98886 0.98541 0.90132 1.26876 0.93163 0.96654 1.01455 1.69837 1.22375 1.12247 1.38617 0.85128 0.79442 0.78012 0.76822 1.18592 1.18509 1.18237 1.20877 1.13524 0.95686 0.96835 1.20703 0.97221 0.98048 0.92771 1.21293 1.05407 0.95500 0.97333 1.20940 0.95628 0.98927 0.92889 0.92516 0.85834 0.84269 0.79178 0.84361 0.86032 0.87343 0.89423 0.88284 0.87201 0.86927 0.87554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -6.88 10.70 113.37 1.21 -5.66 16 2 S 1.41 23.93 14.18 -56.49 -0.80 23.13 16 3 O -0.93 -29.89 16.88 -148.98 -2.52 -32.40 16 4 C -0.50 -12.57 5.62 22.34 0.13 -12.45 16 5 C -0.02 -0.39 9.73 22.23 0.22 -0.18 16 6 C -0.17 -5.04 9.43 22.53 0.21 -4.83 16 7 C 0.03 1.08 5.88 -20.03 -0.12 0.97 16 8 C -0.22 -9.59 5.90 -19.87 -0.12 -9.71 16 9 C -0.07 -3.31 9.36 22.22 0.21 -3.10 16 10 C -0.19 -9.94 8.63 22.47 0.19 -9.74 16 11 C 0.09 4.83 5.57 -21.28 -0.12 4.71 16 12 C -0.48 -25.27 9.03 23.38 0.21 -25.06 16 13 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 14 C 0.04 1.74 5.13 85.28 0.44 2.17 16 15 N -0.81 -39.98 10.97 21.84 0.24 -39.74 16 16 Si 0.99 36.04 29.60 68.60 2.03 38.07 16 17 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 18 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 19 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 20 C -0.25 -12.50 9.73 22.47 0.22 -12.28 16 21 C -0.07 -3.20 9.36 22.22 0.21 -2.99 16 22 C -0.18 -6.50 9.43 22.53 0.21 -6.29 16 23 C -0.06 -2.16 9.43 22.23 0.21 -1.95 16 24 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 28 H 0.14 3.74 6.18 -2.91 -0.02 3.72 16 29 H 0.12 4.67 6.18 -2.91 -0.02 4.65 16 30 H 0.11 5.68 6.18 -2.91 -0.02 5.66 16 31 H 0.29 12.98 8.29 -92.71 -0.77 12.21 16 32 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 33 H 0.11 4.53 6.18 -2.91 -0.02 4.52 16 34 H 0.11 4.13 6.18 -2.91 -0.02 4.12 16 35 H 0.11 3.69 7.44 -2.91 -0.02 3.67 16 Total: -1.00 -73.79 310.95 3.38 -70.41 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: 1.11 Total: 26.93 kcal Atomic # 6 Polarization: -89.71 SS G_CDS: 3.31 Total: -86.40 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.24 Total: -39.74 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -2.52 Total: -32.40 kcal Atomic # 14 Polarization: 36.04 SS G_CDS: 2.03 Total: 38.07 kcal Atomic # 16 Polarization: 23.93 SS G_CDS: -0.80 Total: 23.13 kcal Total: -73.79 3.38 -70.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241482441.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.887 kcal (2) G-P(sol) polarization free energy of solvation -73.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds