Wall clock time and date at job start Tue Mar 31 2020 05:38:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 O 1.42095 * 109.47261 * 2 1 4 4 C 1.76202 * 102.99837 * 109.05858 * 2 1 3 5 5 C 1.38393 * 119.84921 * 269.72252 * 4 2 1 6 6 C 1.37928 * 120.15129 * 179.76864 * 5 4 2 7 7 C 1.39646 * 119.84651 * 0.52867 * 6 5 4 8 8 C 1.47878 * 120.15152 * 179.70555 * 7 6 5 9 9 C 1.39152 * 120.33823 * 129.74175 * 8 7 6 10 10 C 1.38085 * 119.98421 * 179.77367 * 9 8 7 11 11 C 1.38919 * 120.67449 * 0.51053 * 10 9 8 12 12 C 1.36435 * 120.68414 * 359.74554 * 11 10 9 13 13 C 1.40753 * 119.98978 * 359.97438 * 12 11 10 14 14 C 1.40875 * 120.33501 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00261 * 153.69244 * 14 13 12 16 16 C 1.40080 * 119.99897 * 333.70240 * 14 13 12 17 17 N 1.30769 * 119.99822 * 344.29794 * 16 14 13 18 18 Si 1.86804 * 119.99867 * 164.30188 * 16 14 13 19 19 H 1.48496 * 109.47128 * 59.99809 * 18 16 14 20 20 H 1.48500 * 109.46677 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.46965 * 299.99575 * 18 16 14 22 22 C 1.39650 * 119.70167 * 359.72616 * 7 6 5 23 23 C 1.37929 * 119.85012 * 0.02562 * 22 7 6 24 24 H 1.09003 * 109.47376 * 310.94448 * 1 2 3 25 25 H 1.09001 * 109.47300 * 70.94078 * 1 2 3 26 26 H 1.09000 * 109.47366 * 190.94369 * 1 2 3 27 27 H 1.08008 * 119.92346 * 359.97438 * 5 4 2 28 28 H 1.08000 * 120.07888 * 180.27816 * 6 5 4 29 29 H 1.08008 * 120.00506 * 0.02578 * 9 8 7 30 30 H 1.08010 * 119.66509 * 180.25989 * 10 9 8 31 31 H 1.07997 * 119.66040 * 179.76903 * 11 10 9 32 32 H 1.08003 * 120.01179 * 179.97438 * 12 11 10 33 33 H 0.97005 * 119.99677 * 180.02562 * 17 16 14 34 34 H 1.08002 * 120.07619 * 180.02562 * 22 7 6 35 35 H 1.07998 * 119.92248 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.2876 1.3397 0.0000 4 6 2.2103 -0.5606 1.6228 5 6 2.3709 0.3552 2.6478 6 6 2.6764 -0.0771 3.9215 7 6 2.8346 -1.4416 4.1730 8 6 3.1687 -1.9120 5.5346 9 6 2.4277 -2.9293 6.1283 10 6 2.7489 -3.3661 7.3982 11 6 3.8021 -2.7928 8.0997 12 6 4.5434 -1.7901 7.5460 13 6 4.2444 -1.3269 6.2509 14 6 5.0048 -0.2917 5.6724 15 1 5.0850 -0.2161 4.5980 16 6 5.6571 0.6395 6.4906 17 7 5.3267 0.7468 7.7513 18 14 6.9989 1.7282 5.7808 19 1 6.4381 2.5500 4.6784 20 1 7.5262 2.6208 6.8441 21 1 8.0987 0.8797 5.2557 22 6 2.6764 -2.3599 3.1329 23 6 2.3657 -1.9143 1.8651 24 1 -0.3634 0.6735 0.7762 25 1 -0.3634 0.3356 -0.9713 26 1 -0.3634 -1.0090 0.1951 27 1 2.2534 1.4106 2.4507 28 1 2.7971 0.6383 4.7215 29 1 1.6040 -3.3798 5.5943 30 1 2.1730 -4.1589 7.8525 31 1 4.0367 -3.1446 9.0934 32 1 5.3596 -1.3519 8.1012 33 1 5.7781 1.3919 8.3178 34 1 2.7969 -3.4166 3.3208 35 1 2.2427 -2.6234 1.0599 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241484893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:06 Heat of formation + Delta-G solvation = -21.222750 kcal Electronic energy + Delta-G solvation = -19368.912739 eV Core-core repulsion = 16421.805135 eV Total energy + Delta-G solvation = -2947.107604 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.38018 -38.77294 -36.81056 -35.65643 -33.43333 -31.98975 -31.32734 -29.93449 -29.42276 -27.25518 -24.17272 -23.65491 -22.50819 -21.44899 -19.32255 -18.86169 -17.76325 -17.23609 -16.67620 -16.14075 -15.98137 -15.73296 -15.25381 -15.17636 -14.66114 -14.50757 -14.38536 -14.19590 -13.70020 -13.50041 -13.39835 -13.17009 -12.97009 -12.85720 -12.73119 -12.49512 -12.24408 -11.97716 -11.54906 -11.43555 -11.15016 -11.08617 -10.12970 -9.79058 -9.39695 -9.34404 -9.01813 -8.69674 -6.38173 -0.04434 0.58442 0.90635 1.02877 1.21212 1.27773 1.37147 1.45172 1.89549 2.10637 2.66438 2.82590 3.10333 3.67968 4.02406 4.15238 4.21677 4.37738 4.43914 4.55358 4.58071 4.60345 4.73775 4.84188 5.00635 5.06716 5.18508 5.21210 5.27409 5.37829 5.40267 5.45870 5.65511 5.78898 5.97246 6.09481 6.12049 6.20694 6.32187 6.62945 6.85764 6.97028 8.21949 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.015640 B = 0.005722 C = 0.004387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.817469 B = 4892.270112 C = 6381.340744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.496 4.496 2 S 1.408 4.592 3 O -0.935 6.935 4 C -0.487 4.487 5 C -0.081 4.081 6 C -0.138 4.138 7 C 0.030 3.970 8 C -0.206 4.206 9 C -0.073 4.073 10 C -0.239 4.239 11 C -0.106 4.106 12 C -0.186 4.186 13 C 0.099 3.901 14 C -0.475 4.475 15 H 0.069 0.931 16 C 0.040 3.960 17 N -0.818 5.818 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.261 1.261 21 H -0.256 1.256 22 C -0.150 4.150 23 C -0.026 4.026 24 H 0.054 0.946 25 H 0.124 0.876 26 H 0.143 0.857 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.289 0.711 34 H 0.143 0.857 35 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.550 -7.641 -13.885 17.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 1.606 4.394 3 O -0.931 6.931 4 C -0.583 4.583 5 C -0.100 4.100 6 C -0.158 4.158 7 C 0.030 3.970 8 C -0.208 4.208 9 C -0.091 4.091 10 C -0.258 4.258 11 C -0.124 4.124 12 C -0.206 4.206 13 C 0.097 3.903 14 C -0.504 4.504 15 H 0.087 0.913 16 C -0.176 4.176 17 N -0.444 5.444 18 Si 0.786 3.214 19 H -0.197 1.197 20 H -0.185 1.185 21 H -0.180 1.180 22 C -0.169 4.169 23 C -0.045 4.045 24 H 0.074 0.926 25 H 0.143 0.857 26 H 0.162 0.838 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.129 0.871 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.878 -7.209 -14.372 17.120 hybrid contribution -0.055 2.510 2.472 3.523 sum -5.934 -4.699 -11.901 14.104 Atomic orbital electron populations 1.27759 1.20874 1.09445 1.07326 1.68182 0.85811 0.96095 0.89345 1.92961 1.76010 1.41080 1.83020 1.27816 1.14454 1.00052 1.15967 1.20894 0.97286 0.98708 0.93121 1.21259 1.01756 0.96161 0.96575 1.19122 0.91872 0.92730 0.93315 1.19032 1.00778 1.04833 0.96131 1.20922 0.97929 0.95014 0.95235 1.20714 1.02699 1.05671 0.96680 1.20801 0.96302 0.96357 0.98923 1.21057 1.02421 0.99316 0.97759 1.17875 0.89957 0.90710 0.91788 1.19602 1.26801 1.09704 0.94330 0.91310 1.26619 0.97908 0.98370 0.94706 1.69820 1.36153 1.31046 1.07368 0.85501 0.78697 0.78182 0.78980 1.19690 1.18524 1.17988 1.21722 1.02525 0.99830 0.92855 1.21287 0.92642 0.93394 0.97129 0.92648 0.85725 0.83837 0.88482 0.89149 0.85941 0.85890 0.87122 0.88091 0.90012 0.83886 0.78635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.50 -7.68 10.70 113.37 1.21 -6.46 16 2 S 1.41 28.07 14.18 -56.49 -0.80 27.26 16 3 O -0.93 -33.67 16.88 -148.98 -2.51 -36.18 16 4 C -0.49 -14.13 5.62 22.34 0.13 -14.00 16 5 C -0.08 -3.24 9.43 22.23 0.21 -3.03 16 6 C -0.14 -6.29 8.00 22.54 0.18 -6.11 16 7 C 0.03 1.28 4.93 -20.04 -0.10 1.18 16 8 C -0.21 -9.88 5.52 -19.61 -0.11 -9.99 16 9 C -0.07 -3.09 9.52 22.45 0.21 -2.87 16 10 C -0.24 -9.93 10.03 22.40 0.22 -9.71 16 11 C -0.11 -4.82 9.96 22.01 0.22 -4.60 16 12 C -0.19 -9.78 8.62 22.46 0.19 -9.59 16 13 C 0.10 5.35 5.56 -21.12 -0.12 5.23 16 14 C -0.48 -26.05 7.13 23.36 0.17 -25.88 16 15 H 0.07 3.82 6.61 -2.91 -0.02 3.80 16 16 C 0.04 2.06 5.17 85.30 0.44 2.51 16 17 N -0.82 -43.52 10.95 21.85 0.24 -43.28 16 18 Si 0.96 40.65 29.59 68.60 2.03 42.68 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 21 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 22 C -0.15 -4.83 9.53 22.54 0.21 -4.62 16 23 C -0.03 -0.62 9.73 22.23 0.22 -0.40 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.10 4.13 7.43 -2.91 -0.02 4.11 16 28 H 0.09 4.68 7.31 -2.91 -0.02 4.66 16 29 H 0.12 4.32 8.05 -2.91 -0.02 4.29 16 30 H 0.12 4.25 8.06 -2.91 -0.02 4.22 16 31 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 32 H 0.10 5.56 6.21 -2.91 -0.02 5.54 16 33 H 0.29 13.99 8.30 -92.70 -0.77 13.22 16 34 H 0.14 3.93 8.05 -2.91 -0.02 3.90 16 35 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -77.58 312.92 3.34 -74.24 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 1.10 Total: 23.64 kcal Atomic # 6 Polarization: -91.65 SS G_CDS: 3.29 Total: -88.35 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.24 Total: -43.28 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -2.51 Total: -36.18 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Atomic # 16 Polarization: 28.07 SS G_CDS: -0.80 Total: 27.26 kcal Total: -77.58 3.34 -74.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241484893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.014 kcal (2) G-P(sol) polarization free energy of solvation -77.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds