Wall clock time and date at job start Tue Mar 31 2020 06:30:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76199 * 100.00022 * 2 1 4 4 N 1.32597 * 119.07952 * 179.97438 * 3 2 1 5 5 C 1.32104 * 120.86237 * 179.97438 * 4 3 2 6 6 C 1.39748 * 119.04907 * 0.02562 * 5 4 3 7 7 C 1.48366 * 120.83286 * 179.97438 * 6 5 4 8 8 C 1.39362 * 120.11998 * 359.72071 * 7 6 5 9 9 C 1.38011 * 119.87172 * 179.77020 * 8 7 6 10 10 C 1.38324 * 120.12476 * 0.48877 * 9 8 7 11 11 C 1.50696 * 119.87841 * 179.76706 * 10 9 8 12 12 C 1.50703 * 109.46995 * 270.02372 * 11 10 9 13 13 H 1.07998 * 120.00222 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00011 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99622 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99885 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47160 * 90.00100 * 16 14 12 18 18 H 1.48498 * 109.47041 * 209.99825 * 16 14 12 19 19 H 1.48497 * 109.47237 * 329.99794 * 16 14 12 20 20 C 1.38323 * 120.24797 * 359.78670 * 10 9 8 21 21 C 1.38014 * 120.12326 * 359.95837 * 20 10 9 22 22 C 1.39743 * 118.33404 * 0.25358 * 6 5 4 23 23 N 1.32100 * 119.05090 * 359.48738 * 22 6 5 24 24 H 1.09001 * 109.47796 * 299.99904 * 1 2 3 25 25 H 1.09004 * 109.46727 * 60.00197 * 1 2 3 26 26 H 1.09001 * 109.47022 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.47933 * 180.02562 * 5 4 3 28 28 H 1.07997 * 120.06034 * 0.02856 * 8 7 6 29 29 H 1.08003 * 119.93901 * 180.25756 * 9 8 7 30 30 H 1.09003 * 109.47424 * 30.01997 * 11 10 9 31 31 H 1.08996 * 109.47626 * 150.02449 * 11 10 9 32 32 H 0.97008 * 119.99495 * 179.97438 * 15 14 12 33 33 H 1.07999 * 119.94401 * 179.97438 * 20 10 9 34 34 H 1.08002 * 120.06493 * 179.97438 * 21 20 10 35 35 H 1.07994 * 120.47144 * 179.74721 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 3.3691 2.1686 0.0005 5 6 3.6389 3.4619 0.0000 6 6 2.5815 4.3756 -0.0005 7 6 2.8391 5.8367 -0.0005 8 6 4.1476 6.3161 0.0059 9 6 4.3814 7.6763 0.0011 10 6 3.3199 8.5631 0.0001 11 6 3.5815 10.0472 0.0002 12 6 3.6682 10.5420 1.4210 13 1 3.5456 9.8509 2.2419 14 6 3.9040 11.8769 1.6731 15 7 3.9790 12.3086 2.9131 16 14 4.1167 13.0720 0.2533 17 1 2.7944 13.6325 -0.1243 18 1 5.0221 14.1744 0.6657 19 1 4.7028 12.3592 -0.9102 20 6 2.0191 8.0929 -0.0005 21 6 1.7735 6.7348 -0.0010 22 6 1.2754 3.8786 0.0050 23 7 1.0866 2.5712 0.0001 24 1 -0.3635 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.6618 3.8080 0.0000 28 1 4.9771 5.6245 0.0104 29 1 5.3951 8.0490 0.0019 30 1 4.5214 10.2505 -0.5132 31 1 2.7684 10.5596 -0.5140 32 1 4.1453 13.2478 3.0903 33 1 1.1939 8.7897 -0.0008 34 1 0.7574 6.3686 -0.0010 35 1 0.4326 4.5537 0.0088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241629316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:00 Heat of formation + Delta-G solvation = 61.700385 kcal Electronic energy + Delta-G solvation = -18426.111501 eV Core-core repulsion = 15514.892465 eV Total energy + Delta-G solvation = -2911.219036 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.05538 -38.80535 -34.33940 -34.02896 -32.66547 -30.69850 -30.65661 -29.22565 -27.52906 -24.97893 -24.68841 -22.44852 -21.91762 -20.33392 -18.81427 -17.57283 -16.86985 -16.78618 -15.58103 -15.30584 -15.02182 -14.52404 -14.31095 -14.03823 -13.94034 -13.71350 -13.37239 -13.00133 -12.80118 -12.63321 -12.54200 -11.82863 -11.71648 -11.25428 -11.06910 -10.84993 -10.77889 -10.61598 -10.45095 -10.07708 -9.98410 -9.46734 -9.44499 -8.67322 -8.58510 -8.36280 -7.50366 -6.15910 -4.16293 0.29840 0.90345 1.02170 1.79360 1.88300 1.97348 3.22162 3.30757 3.32209 3.51550 3.97556 4.27648 4.33458 4.36144 4.44350 4.65731 4.72751 4.86216 4.91569 5.15202 5.21004 5.34290 5.48771 5.54162 5.66769 5.88818 5.98823 6.05152 6.31506 6.32009 6.69270 6.75359 6.78538 6.87010 6.89219 7.36714 7.40923 7.59278 7.66486 8.38942 8.88456 9.43515 10.96781 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.049472 B = 0.002757 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.843461 B =10152.879131 C =10310.258688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.007 6.007 3 C 0.274 3.726 4 N -0.495 5.495 5 C 0.159 3.841 6 C -0.124 4.124 7 C -0.082 4.082 8 C -0.101 4.101 9 C -0.119 4.119 10 C -0.012 4.012 11 C 0.010 3.990 12 C -0.516 4.516 13 H 0.074 0.926 14 C 0.070 3.930 15 N -0.897 5.897 16 Si 0.878 3.122 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.264 1.264 20 C -0.120 4.120 21 C -0.102 4.102 22 C 0.158 3.842 23 N -0.519 5.519 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.104 0.896 27 H 0.175 0.825 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.030 0.970 31 H 0.026 0.974 32 H 0.265 0.735 33 H 0.125 0.875 34 H 0.117 0.883 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 -20.122 -7.930 22.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.227 5.773 3 C -0.101 4.101 4 N -0.210 5.210 5 C -0.010 4.010 6 C -0.131 4.131 7 C -0.084 4.084 8 C -0.120 4.120 9 C -0.137 4.137 10 C -0.013 4.013 11 C -0.027 4.027 12 C -0.554 4.554 13 H 0.092 0.908 14 C -0.132 4.132 15 N -0.535 5.535 16 Si 0.705 3.295 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.189 1.189 20 C -0.138 4.138 21 C -0.120 4.120 22 C -0.011 4.011 23 N -0.235 5.235 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.123 0.877 27 H 0.192 0.808 28 H 0.136 0.864 29 H 0.143 0.857 30 H 0.048 0.952 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.970 -22.019 -7.814 23.887 hybrid contribution -0.551 2.915 -0.471 3.004 sum -5.521 -19.104 -8.285 21.543 Atomic orbital electron populations 1.23542 0.94207 1.06200 1.07235 1.85746 1.06763 0.93902 1.90937 1.24840 0.87435 1.00454 0.97337 1.68432 1.20861 1.17084 1.14616 1.23409 1.00160 0.87095 0.90334 1.20552 0.95309 0.95265 1.01980 1.18186 0.94165 0.89158 1.06879 1.21060 0.95089 0.95758 1.00052 1.21035 0.99623 0.92145 1.00913 1.20474 0.92336 0.97815 0.90628 1.18883 0.97374 0.87567 0.98833 1.20882 1.49999 0.94338 0.90203 0.90774 1.25002 0.94481 0.98150 0.95551 1.69898 1.49183 1.15705 1.18749 0.86800 0.78568 0.81014 0.83110 1.20111 1.21169 1.18908 1.21031 0.97222 0.94533 1.00991 1.21044 0.97540 0.93251 1.00187 1.23316 0.96376 0.90917 0.90454 1.68676 1.34291 1.04413 1.16137 0.89111 0.89157 0.87721 0.80798 0.86417 0.85698 0.95150 0.95604 0.92480 0.85735 0.86516 0.80971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.61 101.05 0.97 -0.08 16 2 S -0.01 -0.07 22.89 -107.50 -2.46 -2.53 16 3 C 0.27 3.62 7.85 -90.76 -0.71 2.91 16 4 N -0.49 -6.86 10.38 -13.17 -0.14 -6.99 16 5 C 0.16 2.01 10.69 -16.87 -0.18 1.83 16 6 C -0.12 -1.60 5.91 -104.60 -0.62 -2.21 16 7 C -0.08 -1.17 5.88 -104.89 -0.62 -1.78 16 8 C -0.10 -1.47 9.45 -39.25 -0.37 -1.84 16 9 C -0.12 -2.04 9.68 -39.63 -0.38 -2.43 16 10 C -0.01 -0.24 5.07 -104.56 -0.53 -0.77 16 11 C 0.01 0.24 4.17 -29.04 -0.12 0.12 16 12 C -0.52 -14.05 9.65 -34.44 -0.33 -14.38 16 13 H 0.07 2.22 7.98 -52.49 -0.42 1.80 16 14 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -26.80 13.96 55.43 0.77 -26.02 16 16 Si 0.88 20.63 27.47 -169.99 -4.67 15.96 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 20 C -0.12 -2.04 9.68 -39.63 -0.38 -2.43 16 21 C -0.10 -1.47 9.45 -39.25 -0.37 -1.84 16 22 C 0.16 1.92 10.69 -16.87 -0.18 1.74 16 23 N -0.52 -6.61 9.11 -13.17 -0.12 -6.73 16 24 H 0.09 0.70 8.11 -51.92 -0.42 0.28 16 25 H 0.09 0.69 8.11 -51.91 -0.42 0.26 16 26 H 0.10 0.51 8.14 -51.92 -0.42 0.09 16 27 H 0.18 1.76 6.33 -52.49 -0.33 1.43 16 28 H 0.12 1.35 6.29 -52.49 -0.33 1.02 16 29 H 0.13 2.05 8.06 -52.48 -0.42 1.62 16 30 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 31 H 0.03 0.56 7.51 -51.93 -0.39 0.17 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.12 2.03 8.06 -52.49 -0.42 1.60 16 34 H 0.12 1.32 6.29 -52.49 -0.33 0.99 16 35 H 0.17 1.65 6.33 -52.49 -0.33 1.32 16 LS Contribution 314.48 15.07 4.74 4.74 Total: -1.00 -31.13 314.48 -9.58 -40.72 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -3.78 Total: 0.17 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -3.93 Total: -19.30 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.52 Total: -39.75 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -2.46 Total: -2.53 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.13 -9.58 -40.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241629316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.415 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds