Wall clock time and date at job start Tue Mar 31 2020 06:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76199 * 100.00022 * 2 1 4 4 N 1.32597 * 119.07952 * 179.97438 * 3 2 1 5 5 C 1.32104 * 120.86237 * 179.97438 * 4 3 2 6 6 C 1.39748 * 119.04907 * 0.02562 * 5 4 3 7 7 C 1.48366 * 120.83286 * 179.97438 * 6 5 4 8 8 C 1.39362 * 120.11998 * 359.72071 * 7 6 5 9 9 C 1.38011 * 119.87172 * 179.77020 * 8 7 6 10 10 C 1.38324 * 120.12476 * 0.48877 * 9 8 7 11 11 C 1.50696 * 119.87841 * 179.76706 * 10 9 8 12 12 C 1.50703 * 109.46995 * 270.02372 * 11 10 9 13 13 H 1.07998 * 120.00222 * 359.97438 * 12 11 10 14 14 C 1.37881 * 120.00011 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99622 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 119.99885 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47160 * 90.00100 * 16 14 12 18 18 H 1.48498 * 109.47041 * 209.99825 * 16 14 12 19 19 H 1.48497 * 109.47237 * 329.99794 * 16 14 12 20 20 C 1.38323 * 120.24797 * 359.78670 * 10 9 8 21 21 C 1.38014 * 120.12326 * 359.95837 * 20 10 9 22 22 C 1.39743 * 118.33404 * 0.25358 * 6 5 4 23 23 N 1.32100 * 119.05090 * 359.48738 * 22 6 5 24 24 H 1.09001 * 109.47796 * 299.99904 * 1 2 3 25 25 H 1.09004 * 109.46727 * 60.00197 * 1 2 3 26 26 H 1.09001 * 109.47022 * 179.97438 * 1 2 3 27 27 H 1.07995 * 120.47933 * 180.02562 * 5 4 3 28 28 H 1.07997 * 120.06034 * 0.02856 * 8 7 6 29 29 H 1.08003 * 119.93901 * 180.25756 * 9 8 7 30 30 H 1.09003 * 109.47424 * 30.01997 * 11 10 9 31 31 H 1.08996 * 109.47626 * 150.02449 * 11 10 9 32 32 H 0.97008 * 119.99495 * 179.97438 * 15 14 12 33 33 H 1.07999 * 119.94401 * 179.97438 * 20 10 9 34 34 H 1.08002 * 120.06493 * 179.97438 * 21 20 10 35 35 H 1.07994 * 120.47144 * 179.74721 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 3.3691 2.1686 0.0005 5 6 3.6389 3.4619 0.0000 6 6 2.5815 4.3756 -0.0005 7 6 2.8391 5.8367 -0.0005 8 6 4.1476 6.3161 0.0059 9 6 4.3814 7.6763 0.0011 10 6 3.3199 8.5631 0.0001 11 6 3.5815 10.0472 0.0002 12 6 3.6682 10.5420 1.4210 13 1 3.5456 9.8509 2.2419 14 6 3.9040 11.8769 1.6731 15 7 3.9790 12.3086 2.9131 16 14 4.1167 13.0720 0.2533 17 1 2.7944 13.6325 -0.1243 18 1 5.0221 14.1744 0.6657 19 1 4.7028 12.3592 -0.9102 20 6 2.0191 8.0929 -0.0005 21 6 1.7735 6.7348 -0.0010 22 6 1.2754 3.8786 0.0050 23 7 1.0866 2.5712 0.0001 24 1 -0.3635 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.6618 3.8080 0.0000 28 1 4.9771 5.6245 0.0104 29 1 5.3951 8.0490 0.0019 30 1 4.5214 10.2505 -0.5132 31 1 2.7684 10.5596 -0.5140 32 1 4.1453 13.2478 3.0903 33 1 1.1939 8.7897 -0.0008 34 1 0.7574 6.3686 -0.0010 35 1 0.4326 4.5537 0.0088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241629316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:59 Heat of formation + Delta-G solvation = 44.399672 kcal Electronic energy + Delta-G solvation = -18426.861716 eV Core-core repulsion = 15514.892465 eV Total energy + Delta-G solvation = -2911.969251 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.02487 -40.03364 -35.82639 -34.98683 -34.39450 -32.15258 -31.87460 -29.89150 -28.97885 -25.99702 -25.95013 -24.01736 -23.09319 -21.70366 -19.70998 -18.97402 -18.56200 -17.90248 -16.65424 -16.40762 -16.24903 -15.84665 -15.78633 -15.01485 -14.94185 -14.75066 -14.38156 -14.32460 -14.07210 -13.94133 -13.50438 -13.47029 -13.26953 -12.48090 -12.38802 -12.08006 -12.03813 -11.82597 -11.73730 -11.61725 -11.48461 -11.27744 -10.79114 -10.40862 -9.80014 -9.45436 -8.54451 -8.30065 -6.35558 -0.72790 -0.03007 0.18731 0.56833 0.76775 1.18938 1.37239 1.39070 1.50544 2.35168 2.49749 3.04423 3.05399 3.07383 3.41565 3.51624 3.61260 3.71894 4.13442 4.20689 4.28748 4.33893 4.36970 4.53972 4.63221 4.81214 4.94201 4.97157 5.02455 5.09173 5.18652 5.30371 5.52154 5.56117 5.56272 5.77408 5.97530 6.10036 6.26826 6.71114 6.71281 7.28165 8.86220 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.049472 B = 0.002757 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.843461 B =10152.879131 C =10310.258688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.012 6.012 3 C 0.262 3.738 4 N -0.517 5.517 5 C 0.160 3.840 6 C -0.137 4.137 7 C -0.069 4.069 8 C -0.100 4.100 9 C -0.132 4.132 10 C -0.052 4.052 11 C 0.016 3.984 12 C -0.519 4.519 13 H 0.028 0.972 14 C 0.007 3.993 15 N -0.949 5.949 16 Si 0.950 3.050 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.244 1.244 20 C -0.131 4.131 21 C -0.099 4.099 22 C 0.162 3.838 23 N -0.524 5.524 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.133 0.867 27 H 0.195 0.805 28 H 0.149 0.851 29 H 0.124 0.876 30 H 0.033 0.967 31 H 0.032 0.968 32 H 0.267 0.733 33 H 0.125 0.875 34 H 0.151 0.849 35 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.389 -21.828 -9.684 24.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.222 5.778 3 C -0.112 4.112 4 N -0.233 5.233 5 C -0.008 4.008 6 C -0.145 4.145 7 C -0.070 4.070 8 C -0.118 4.118 9 C -0.150 4.150 10 C -0.052 4.052 11 C -0.021 4.021 12 C -0.557 4.557 13 H 0.047 0.953 14 C -0.190 4.190 15 N -0.590 5.590 16 Si 0.773 3.227 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.167 1.167 20 C -0.149 4.149 21 C -0.117 4.117 22 C -0.007 4.007 23 N -0.241 5.241 24 H 0.107 0.893 25 H 0.109 0.891 26 H 0.151 0.849 27 H 0.212 0.788 28 H 0.166 0.834 29 H 0.142 0.858 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.168 0.832 35 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -5.839 -23.758 -9.583 26.275 hybrid contribution -0.357 3.174 0.142 3.197 sum -6.196 -20.584 -9.441 23.478 Atomic orbital electron populations 1.23638 0.91573 1.08021 1.07091 1.85785 1.09651 0.92238 1.90141 1.25392 0.87525 1.01829 0.96431 1.68518 1.21322 1.17612 1.15859 1.23783 1.01171 0.86852 0.89041 1.20446 0.95949 0.94302 1.03798 1.18355 0.93953 0.89931 1.04805 1.21340 0.96506 0.95050 0.98913 1.21114 0.99119 0.93255 1.01468 1.20333 0.94133 0.96287 0.94474 1.18716 0.97569 0.90244 0.95555 1.21146 1.49009 0.93787 0.91738 0.95349 1.25993 0.94212 1.00364 0.98450 1.70064 1.51177 1.16312 1.21425 0.85654 0.78999 0.78190 0.79822 1.18992 1.21078 1.16749 1.21123 0.96364 0.96007 1.01431 1.21336 0.99423 0.92038 0.98878 1.23756 0.96896 0.91177 0.88851 1.68776 1.34006 1.04589 1.16777 0.89291 0.89136 0.84883 0.78813 0.83360 0.85815 0.94915 0.94973 0.92383 0.85678 0.83163 0.78569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 9.61 113.37 1.09 -0.53 16 2 S -0.01 -0.22 22.89 -56.49 -1.29 -1.52 16 3 C 0.26 6.44 7.85 180.40 1.42 7.85 16 4 N -0.52 -13.41 10.38 -195.58 -2.03 -15.44 16 5 C 0.16 3.68 10.69 85.02 0.91 4.59 16 6 C -0.14 -3.19 5.91 -19.85 -0.12 -3.31 16 7 C -0.07 -1.80 5.88 -20.04 -0.12 -1.91 16 8 C -0.10 -2.74 9.45 22.49 0.21 -2.52 16 9 C -0.13 -4.48 9.68 22.24 0.22 -4.26 16 10 C -0.05 -2.02 5.07 -19.82 -0.10 -2.13 16 11 C 0.02 0.74 4.17 29.10 0.12 0.86 16 12 C -0.52 -29.25 9.65 25.60 0.25 -29.00 16 13 H 0.03 1.80 7.98 -2.91 -0.02 1.77 16 14 C 0.01 0.39 5.47 84.66 0.46 0.85 16 15 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 16 Si 0.95 42.79 27.47 68.60 1.88 44.67 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 19 H -0.24 -10.09 6.54 99.48 0.65 -9.44 16 20 C -0.13 -4.41 9.68 22.24 0.22 -4.20 16 21 C -0.10 -2.65 9.45 22.49 0.21 -2.43 16 22 C 0.16 3.47 10.69 85.02 0.91 4.38 16 23 N -0.52 -12.12 9.11 -195.59 -1.78 -13.90 16 24 H 0.09 1.16 8.11 -2.39 -0.02 1.14 16 25 H 0.09 1.14 8.11 -2.39 -0.02 1.12 16 26 H 0.13 0.85 8.14 -2.39 -0.02 0.84 16 27 H 0.20 3.40 6.33 -2.91 -0.02 3.38 16 28 H 0.15 3.02 6.29 -2.91 -0.02 3.00 16 29 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 30 H 0.03 1.44 7.14 -2.39 -0.02 1.43 16 31 H 0.03 1.39 7.51 -2.39 -0.02 1.38 16 32 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 33 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 34 H 0.15 2.90 6.29 -2.91 -0.02 2.88 16 35 H 0.20 3.05 6.33 -2.91 -0.02 3.03 16 Total: -1.00 -69.65 314.48 3.81 -65.84 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 1.06 Total: 10.55 kcal Atomic # 6 Polarization: -37.44 SS G_CDS: 5.68 Total: -31.77 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -3.51 Total: -87.78 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.88 Total: 44.67 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -1.29 Total: -1.52 kcal Total: -69.65 3.81 -65.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241629316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.238 kcal (2) G-P(sol) polarization free energy of solvation -69.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds