Wall clock time and date at job start Tue Mar 31 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76204 * 99.99906 * 2 1 4 4 N 1.32676 * 119.04621 * 179.97438 * 3 2 1 5 5 C 1.32001 * 120.89746 * 180.02562 * 4 3 2 6 6 C 1.40082 * 119.01047 * 0.02562 * 5 4 3 7 7 C 1.47863 * 120.86431 * 180.02562 * 6 5 4 8 8 C 1.40033 * 119.88258 * 359.97438 * 7 6 5 9 9 C 1.36189 * 120.11405 * 179.97438 * 8 7 6 10 10 C 1.40974 * 119.87981 * 0.02652 * 9 8 7 11 11 C 1.40991 * 120.10989 * 179.72700 * 10 9 8 12 12 H 1.07993 * 120.00249 * 153.63383 * 11 10 9 13 13 C 1.39965 * 119.99765 * 333.62674 * 11 10 9 14 14 N 1.30830 * 120.00225 * 343.78942 * 13 11 10 15 15 Si 1.86800 * 119.99987 * 163.78519 * 13 11 10 16 16 H 1.48501 * 109.46919 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47398 * 120.00070 * 15 13 11 18 18 H 1.48501 * 109.46958 * 240.00331 * 15 13 11 19 19 C 1.40940 * 119.78258 * 359.97438 * 10 9 8 20 20 C 1.50696 * 120.06014 * 180.02562 * 19 10 9 21 21 C 1.36224 * 119.87832 * 0.02562 * 19 10 9 22 22 C 1.40091 * 118.27757 * 0.27361 * 6 5 4 23 23 N 1.32002 * 119.01176 * 359.42630 * 22 6 5 24 24 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47114 * 299.99641 * 1 2 3 26 26 H 1.08999 * 109.47099 * 59.99830 * 1 2 3 27 27 H 1.07999 * 120.49600 * 180.02562 * 5 4 3 28 28 H 1.07998 * 119.94481 * 0.02562 * 8 7 6 29 29 H 1.08001 * 120.06008 * 179.97438 * 9 8 7 30 30 H 0.97001 * 120.00291 * 179.97438 * 14 13 11 31 31 H 1.08999 * 109.47016 * 89.99921 * 20 19 10 32 32 H 1.09000 * 109.46579 * 209.99932 * 20 19 10 33 33 H 1.09000 * 109.47137 * 329.99736 * 20 19 10 34 34 H 1.07997 * 119.93922 * 179.97438 * 21 19 10 35 35 H 1.08001 * 120.49306 * 179.72418 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 3.3701 2.1683 0.0005 5 6 3.6412 3.4601 0.0010 6 6 2.5817 4.3766 0.0016 7 6 2.8384 5.8328 0.0016 8 6 4.1552 6.3091 0.0016 9 6 4.3971 7.6493 0.0011 10 6 3.3189 8.5575 0.0012 11 6 3.5636 9.9460 0.0065 12 1 2.8333 10.6247 -0.4086 13 6 4.7531 10.4448 0.5499 14 7 5.4856 9.6881 1.3261 15 14 5.2949 12.1910 0.1668 16 1 4.2986 12.8334 -0.7277 17 1 5.3978 12.9657 1.4296 18 1 6.6186 12.1623 -0.5056 19 6 1.9954 8.0729 0.0012 20 6 0.8381 9.0382 0.0006 21 6 1.7642 6.7305 0.0017 22 6 1.2727 3.8777 0.0075 23 7 1.0855 2.5710 0.0007 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.6645 3.8054 0.0010 28 1 4.9805 5.6125 0.0012 29 1 5.4130 8.0157 0.0016 30 1 6.3102 10.0337 1.7024 31 1 0.5593 9.2705 -1.0272 32 1 -0.0110 8.5876 0.5145 33 1 1.1290 9.9545 0.5142 34 1 0.7505 6.3581 0.0021 35 1 0.4292 4.5522 0.0126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241630297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:28 Heat of formation + Delta-G solvation = 48.285810 kcal Electronic energy + Delta-G solvation = -18902.118817 eV Core-core repulsion = 15990.318082 eV Total energy + Delta-G solvation = -2911.800735 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.33517 -38.03490 -34.37505 -33.43039 -32.69585 -31.10155 -29.28859 -28.78164 -26.61965 -25.52664 -23.97557 -23.38351 -20.89385 -19.69364 -18.35076 -17.47928 -16.90741 -15.79989 -15.36144 -14.78045 -14.71610 -14.25033 -13.86467 -13.64719 -13.35394 -13.32581 -12.84300 -12.78285 -12.50622 -12.02181 -11.90219 -11.52961 -11.36995 -11.32092 -11.16592 -10.90880 -10.68192 -10.48428 -10.31876 -9.80507 -9.78637 -9.65868 -9.32516 -8.83617 -7.92341 -7.67480 -7.17440 -6.99798 -4.60997 0.98520 1.50107 1.51740 2.30205 2.57626 2.85992 2.89719 2.94220 3.00990 3.66823 4.05819 4.46365 4.58700 5.00415 5.10024 5.15628 5.22427 5.37800 5.46479 5.61095 5.81182 5.98325 6.07615 6.19167 6.22220 6.48184 6.50462 6.70490 6.72598 6.83823 6.96901 7.11455 7.27981 7.35847 7.63664 7.75323 7.80588 7.96253 8.27969 8.29235 8.51951 8.63889 9.79427 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.040256 B = 0.003346 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.380559 B = 8365.705718 C = 8972.770217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.032 6.032 3 C 0.235 3.765 4 N -0.487 5.487 5 C 0.120 3.880 6 C -0.068 4.068 7 C -0.202 4.202 8 C -0.074 4.074 9 C -0.166 4.166 10 C 0.125 3.875 11 C -0.431 4.431 12 H 0.088 0.912 13 C 0.071 3.929 14 N -0.770 5.770 15 Si 0.913 3.087 16 H -0.257 1.257 17 H -0.271 1.271 18 H -0.268 1.268 19 C -0.198 4.198 20 C -0.087 4.087 21 C -0.055 4.055 22 C 0.117 3.883 23 N -0.510 5.510 24 H 0.099 0.901 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.168 0.832 28 H 0.093 0.907 29 H 0.120 0.880 30 H 0.287 0.713 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.923 -6.672 -1.556 8.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.200 5.800 3 C -0.139 4.139 4 N -0.202 5.202 5 C -0.050 4.050 6 C -0.074 4.074 7 C -0.205 4.205 8 C -0.092 4.092 9 C -0.186 4.186 10 C 0.121 3.879 11 C -0.458 4.458 12 H 0.106 0.894 13 C -0.150 4.150 14 N -0.393 5.393 15 Si 0.736 3.264 16 H -0.180 1.180 17 H -0.196 1.196 18 H -0.193 1.193 19 C -0.199 4.199 20 C -0.144 4.144 21 C -0.073 4.073 22 C -0.052 4.052 23 N -0.226 5.226 24 H 0.117 0.883 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.185 0.815 28 H 0.111 0.889 29 H 0.138 0.862 30 H 0.098 0.902 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.177 -8.692 -1.399 9.744 hybrid contribution -0.260 2.853 -0.004 2.865 sum -4.437 -5.839 -1.403 7.466 Atomic orbital electron populations 1.23430 0.94668 1.05557 1.06900 1.85431 1.06360 0.95657 1.92574 1.24326 0.87505 0.99441 1.02645 1.68218 1.20950 1.17536 1.13486 1.23273 1.00021 0.86964 0.94703 1.20672 0.94403 0.96012 0.96330 1.17726 0.93936 0.88042 1.20824 1.20478 0.94056 0.95682 0.99010 1.20976 0.99553 0.91534 1.06489 1.17655 0.90293 0.93448 0.86484 1.19841 1.01778 0.92868 1.31341 0.89383 1.26101 0.95529 1.00740 0.92665 1.69817 1.11847 1.37928 1.19689 0.86161 0.79673 0.80972 0.79551 1.18032 1.19611 1.19329 1.19440 0.94545 0.92998 1.12946 1.20435 0.95247 0.98784 0.99951 1.20224 0.95991 0.92822 0.98292 1.23159 0.96492 0.90480 0.95114 1.68448 1.34493 1.04697 1.14982 0.88266 0.89481 0.89494 0.81529 0.88853 0.86185 0.90168 0.93742 0.94069 0.91907 0.88861 0.81801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.61 101.05 0.97 -0.51 16 2 S -0.03 -0.46 22.89 -107.50 -2.46 -2.92 16 3 C 0.23 4.21 7.85 -90.63 -0.71 3.49 16 4 N -0.49 -9.20 10.38 -13.07 -0.14 -9.33 16 5 C 0.12 2.21 10.70 -16.79 -0.18 2.03 16 6 C -0.07 -1.28 5.91 -104.57 -0.62 -1.90 16 7 C -0.20 -4.17 5.90 -104.63 -0.62 -4.78 16 8 C -0.07 -1.57 9.38 -39.65 -0.37 -1.94 16 9 C -0.17 -3.90 8.61 -39.28 -0.34 -4.23 16 10 C 0.12 2.96 5.56 -106.80 -0.59 2.36 16 11 C -0.43 -10.04 8.09 -37.89 -0.31 -10.34 16 12 H 0.09 1.95 6.88 -52.49 -0.36 1.59 16 13 C 0.07 1.58 5.15 -17.33 -0.09 1.49 16 14 N -0.77 -17.81 10.97 55.55 0.61 -17.20 16 15 Si 0.91 16.60 29.59 -169.99 -5.03 11.57 16 16 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 17 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 18 H -0.27 -4.85 7.11 56.52 0.40 -4.44 16 19 C -0.20 -4.30 5.90 -104.33 -0.62 -4.91 16 20 C -0.09 -1.62 9.39 36.00 0.34 -1.28 16 21 C -0.05 -1.12 9.02 -39.65 -0.36 -1.47 16 22 C 0.12 2.06 10.70 -16.78 -0.18 1.89 16 23 N -0.51 -8.98 9.10 -13.07 -0.12 -9.10 16 24 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 25 H 0.09 0.98 8.11 -51.92 -0.42 0.56 16 26 H 0.09 0.97 8.11 -51.92 -0.42 0.55 16 27 H 0.17 2.75 6.31 -52.49 -0.33 2.41 16 28 H 0.09 1.77 6.26 -52.49 -0.33 1.44 16 29 H 0.12 2.89 6.23 -52.49 -0.33 2.56 16 30 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 31 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.67 8.08 -51.93 -0.42 0.25 16 33 H 0.06 1.18 6.77 -51.93 -0.35 0.83 16 34 H 0.09 1.65 6.26 -52.49 -0.33 1.32 16 35 H 0.16 2.53 6.31 -52.49 -0.33 2.20 16 LS Contribution 309.90 15.07 4.67 4.67 Total: -1.00 -25.77 309.90 -9.73 -35.50 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -3.60 Total: 6.92 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -3.67 Total: -20.11 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.35 Total: -35.64 kcal Atomic # 14 Polarization: 16.60 SS G_CDS: -5.03 Total: 11.57 kcal Atomic # 16 Polarization: -0.46 SS G_CDS: -2.46 Total: -2.92 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -25.77 -9.73 -35.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241630297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.786 kcal (2) G-P(sol) polarization free energy of solvation -25.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds