Wall clock time and date at job start Tue Mar 31 2020 06:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76204 * 99.99906 * 2 1 4 4 N 1.32676 * 119.04621 * 179.97438 * 3 2 1 5 5 C 1.32001 * 120.89746 * 180.02562 * 4 3 2 6 6 C 1.40082 * 119.01047 * 0.02562 * 5 4 3 7 7 C 1.47863 * 120.86431 * 180.02562 * 6 5 4 8 8 C 1.40033 * 119.88258 * 359.97438 * 7 6 5 9 9 C 1.36189 * 120.11405 * 179.97438 * 8 7 6 10 10 C 1.40974 * 119.87981 * 0.02652 * 9 8 7 11 11 C 1.40991 * 120.10989 * 179.72700 * 10 9 8 12 12 H 1.07993 * 120.00249 * 153.63383 * 11 10 9 13 13 C 1.39965 * 119.99765 * 333.62674 * 11 10 9 14 14 N 1.30830 * 120.00225 * 343.78942 * 13 11 10 15 15 Si 1.86800 * 119.99987 * 163.78519 * 13 11 10 16 16 H 1.48501 * 109.46919 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.47398 * 120.00070 * 15 13 11 18 18 H 1.48501 * 109.46958 * 240.00331 * 15 13 11 19 19 C 1.40940 * 119.78258 * 359.97438 * 10 9 8 20 20 C 1.50696 * 120.06014 * 180.02562 * 19 10 9 21 21 C 1.36224 * 119.87832 * 0.02562 * 19 10 9 22 22 C 1.40091 * 118.27757 * 0.27361 * 6 5 4 23 23 N 1.32002 * 119.01176 * 359.42630 * 22 6 5 24 24 H 1.09001 * 109.46924 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47114 * 299.99641 * 1 2 3 26 26 H 1.08999 * 109.47099 * 59.99830 * 1 2 3 27 27 H 1.07999 * 120.49600 * 180.02562 * 5 4 3 28 28 H 1.07998 * 119.94481 * 0.02562 * 8 7 6 29 29 H 1.08001 * 120.06008 * 179.97438 * 9 8 7 30 30 H 0.97001 * 120.00291 * 179.97438 * 14 13 11 31 31 H 1.08999 * 109.47016 * 89.99921 * 20 19 10 32 32 H 1.09000 * 109.46579 * 209.99932 * 20 19 10 33 33 H 1.09000 * 109.47137 * 329.99736 * 20 19 10 34 34 H 1.07997 * 119.93922 * 179.97438 * 21 19 10 35 35 H 1.08001 * 120.49306 * 179.72418 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 3.3701 2.1683 0.0005 5 6 3.6412 3.4601 0.0010 6 6 2.5817 4.3766 0.0016 7 6 2.8384 5.8328 0.0016 8 6 4.1552 6.3091 0.0016 9 6 4.3971 7.6493 0.0011 10 6 3.3189 8.5575 0.0012 11 6 3.5636 9.9460 0.0065 12 1 2.8333 10.6247 -0.4086 13 6 4.7531 10.4448 0.5499 14 7 5.4856 9.6881 1.3261 15 14 5.2949 12.1910 0.1668 16 1 4.2986 12.8334 -0.7277 17 1 5.3978 12.9657 1.4296 18 1 6.6186 12.1623 -0.5056 19 6 1.9954 8.0729 0.0012 20 6 0.8381 9.0382 0.0006 21 6 1.7642 6.7305 0.0017 22 6 1.2727 3.8777 0.0075 23 7 1.0855 2.5710 0.0007 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 4.6645 3.8054 0.0010 28 1 4.9805 5.6125 0.0012 29 1 5.4130 8.0157 0.0016 30 1 6.3102 10.0337 1.7024 31 1 0.5593 9.2705 -1.0272 32 1 -0.0110 8.5876 0.5145 33 1 1.1290 9.9545 0.5142 34 1 0.7505 6.3581 0.0021 35 1 0.4292 4.5522 0.0126 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241630297.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:28 Heat of formation + Delta-G solvation = 36.943066 kcal Electronic energy + Delta-G solvation = -18902.610675 eV Core-core repulsion = 15990.318082 eV Total energy + Delta-G solvation = -2912.292593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.76938 -39.65029 -35.97825 -34.85111 -34.24460 -32.68139 -30.80679 -29.75715 -28.18677 -27.05402 -25.41038 -24.92198 -22.52182 -21.28060 -19.71107 -19.09239 -18.35453 -17.33378 -16.82624 -16.16869 -16.09184 -15.69419 -15.46639 -14.88368 -14.74047 -14.40710 -14.37228 -14.22804 -13.67195 -13.49476 -13.34694 -13.07303 -12.87074 -12.82354 -12.68714 -12.36091 -12.03693 -11.90437 -11.58259 -11.36841 -11.34338 -11.25303 -10.88095 -10.26975 -9.37474 -9.28584 -8.75618 -8.46357 -6.31890 -0.47309 0.07936 0.30317 1.01401 1.17902 1.26999 1.39613 1.51887 1.54069 2.16517 2.53411 2.89502 3.20772 3.62662 3.68858 3.70407 3.99942 4.07128 4.36326 4.39262 4.42501 4.52488 4.72379 4.76850 4.95923 4.98771 5.04984 5.10810 5.23301 5.32475 5.36300 5.45934 5.71881 5.79586 6.02936 6.10538 6.13394 6.30336 6.61298 6.84668 6.86053 6.97061 8.21120 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.040256 B = 0.003346 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.380559 B = 8365.705718 C = 8972.770217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.025 6.025 3 C 0.230 3.770 4 N -0.508 5.508 5 C 0.123 3.877 6 C -0.089 4.089 7 C -0.195 4.195 8 C -0.083 4.083 9 C -0.191 4.191 10 C 0.093 3.907 11 C -0.465 4.465 12 H 0.089 0.911 13 C 0.034 3.966 14 N -0.809 5.809 15 Si 0.981 3.019 16 H -0.254 1.254 17 H -0.267 1.267 18 H -0.266 1.266 19 C -0.212 4.212 20 C -0.083 4.083 21 C -0.063 4.063 22 C 0.129 3.871 23 N -0.513 5.513 24 H 0.134 0.866 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.178 0.822 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.292 0.708 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.124 0.876 35 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 -8.232 -1.826 10.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.207 5.793 3 C -0.144 4.144 4 N -0.224 5.224 5 C -0.046 4.046 6 C -0.096 4.096 7 C -0.198 4.198 8 C -0.101 4.101 9 C -0.210 4.210 10 C 0.090 3.910 11 C -0.493 4.493 12 H 0.107 0.893 13 C -0.183 4.183 14 N -0.433 5.433 15 Si 0.801 3.199 16 H -0.177 1.177 17 H -0.192 1.192 18 H -0.191 1.191 19 C -0.213 4.213 20 C -0.139 4.139 21 C -0.081 4.081 22 C -0.040 4.040 23 N -0.229 5.229 24 H 0.152 0.848 25 H 0.104 0.896 26 H 0.105 0.895 27 H 0.195 0.805 28 H 0.128 0.872 29 H 0.121 0.879 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.142 0.858 35 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -6.036 -10.271 -1.671 12.030 hybrid contribution 0.164 2.887 0.069 2.893 sum -5.872 -7.384 -1.603 9.569 Atomic orbital electron populations 1.23570 0.91627 1.07827 1.06806 1.85496 1.09644 0.92654 1.91510 1.25177 0.87378 1.01486 1.00319 1.68343 1.21631 1.17560 1.14829 1.23524 1.00671 0.87074 0.93327 1.20604 0.95336 0.95051 0.98591 1.17926 0.93625 0.89166 1.19054 1.20691 0.95362 0.95270 0.98792 1.20951 0.98981 0.92599 1.08474 1.18009 0.91412 0.94022 0.87509 1.20003 1.03003 0.93039 1.33229 0.89304 1.26854 0.95179 1.04327 0.91966 1.69869 1.12598 1.39785 1.21065 0.85161 0.79061 0.76354 0.79295 1.17709 1.19153 1.19102 1.19856 0.94744 0.94347 1.12393 1.20419 0.94817 0.97803 1.00876 1.20539 0.97419 0.92333 0.97827 1.23567 0.96641 0.90988 0.92832 1.68602 1.34098 1.04540 1.15657 0.84778 0.89551 0.89500 0.80473 0.87235 0.87949 0.89730 0.92547 0.91749 0.92945 0.85830 0.79481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.32 9.61 113.37 1.09 -1.23 16 2 S -0.03 -0.64 22.89 -56.49 -1.29 -1.94 16 3 C 0.23 7.71 7.85 180.35 1.42 9.12 16 4 N -0.51 -18.37 10.38 -195.27 -2.03 -20.40 16 5 C 0.12 4.37 10.70 85.12 0.91 5.28 16 6 C -0.09 -3.22 5.91 -19.83 -0.12 -3.33 16 7 C -0.19 -7.89 5.90 -19.87 -0.12 -8.01 16 8 C -0.08 -3.59 9.38 22.23 0.21 -3.38 16 9 C -0.19 -9.33 8.61 22.46 0.19 -9.14 16 10 C 0.09 4.59 5.56 -21.27 -0.12 4.47 16 11 C -0.46 -22.52 8.09 23.36 0.19 -22.33 16 12 H 0.09 4.09 6.88 -2.91 -0.02 4.07 16 13 C 0.03 1.57 5.15 85.26 0.44 2.01 16 14 N -0.81 -39.19 10.97 21.83 0.24 -38.95 16 15 Si 0.98 34.93 29.59 68.60 2.03 36.96 16 16 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 17 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 18 H -0.27 -9.26 7.11 99.48 0.71 -8.56 16 19 C -0.21 -9.20 5.90 -19.67 -0.12 -9.32 16 20 C -0.08 -2.98 9.39 71.23 0.67 -2.31 16 21 C -0.06 -2.49 9.02 22.23 0.20 -2.29 16 22 C 0.13 4.21 10.70 85.12 0.91 5.12 16 23 N -0.51 -16.62 9.10 -195.26 -1.78 -18.39 16 24 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.09 1.63 8.11 -2.39 -0.02 1.61 16 26 H 0.09 1.63 8.11 -2.40 -0.02 1.61 16 27 H 0.18 5.72 6.31 -2.91 -0.02 5.70 16 28 H 0.11 4.22 6.26 -2.91 -0.02 4.20 16 29 H 0.10 5.26 6.23 -2.91 -0.02 5.24 16 30 H 0.29 12.75 8.30 -92.71 -0.77 11.98 16 31 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 33 H 0.05 1.98 6.77 -2.39 -0.02 1.96 16 34 H 0.12 4.01 6.26 -2.91 -0.02 3.99 16 35 H 0.19 5.10 6.31 -2.91 -0.02 5.08 16 Total: -1.00 -56.49 309.90 4.06 -52.44 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 1.13 Total: 25.63 kcal Atomic # 6 Polarization: -41.10 SS G_CDS: 5.76 Total: -35.34 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -3.56 Total: -77.74 kcal Atomic # 14 Polarization: 34.93 SS G_CDS: 2.03 Total: 36.96 kcal Atomic # 16 Polarization: -0.64 SS G_CDS: -1.29 Total: -1.94 kcal Total: -56.49 4.06 -52.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241630297.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.380 kcal (2) G-P(sol) polarization free energy of solvation -56.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds