Wall clock time and date at job start Tue Mar 31 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76204 * 100.00108 * 2 1 4 4 C 1.39453 * 119.54160 * 179.97438 * 3 2 1 5 5 C 1.36866 * 119.37840 * 179.71694 * 4 3 2 6 6 C 1.40326 * 118.49802 * 0.54896 * 5 4 3 7 7 C 1.47772 * 120.46769 * 179.75342 * 6 5 4 8 8 C 1.40011 * 119.45978 * 184.98911 * 7 6 5 9 9 C 1.36531 * 119.46675 * 180.29518 * 8 7 6 10 10 C 1.41342 * 118.41922 * 359.44634 * 9 8 7 11 11 C 1.41009 * 120.54143 * 180.28977 * 10 9 8 12 12 H 1.08008 * 119.99605 * 154.58009 * 11 10 9 13 13 C 1.39965 * 120.00410 * 334.58210 * 11 10 9 14 14 N 1.30825 * 120.00207 * 343.60077 * 13 11 10 15 15 Si 1.86805 * 119.99989 * 163.60126 * 13 11 10 16 16 H 1.48497 * 109.46912 * 90.00249 * 15 13 11 17 17 H 1.48504 * 109.46973 * 209.99813 * 15 13 11 18 18 H 1.48492 * 109.47111 * 329.99970 * 15 13 11 19 19 C 1.40958 * 118.91294 * 0.27108 * 10 9 8 20 20 C 1.50695 * 119.80078 * 179.97438 * 19 10 9 21 21 N 1.31255 * 120.40270 * 0.02562 * 19 10 9 22 22 C 1.39585 * 119.06047 * 359.47616 * 6 5 4 23 23 N 1.31706 * 120.52535 * 0.24985 * 22 6 5 24 24 H 1.09009 * 109.46958 * 300.00344 * 1 2 3 25 25 H 1.09002 * 109.46791 * 59.99733 * 1 2 3 26 26 H 1.08991 * 109.47476 * 180.02562 * 1 2 3 27 27 H 1.08006 * 120.31108 * 0.02588 * 4 3 2 28 28 H 1.07997 * 120.74787 * 180.27715 * 5 4 3 29 29 H 1.08007 * 120.26581 * 0.03663 * 8 7 6 30 30 H 1.07993 * 120.78922 * 179.71167 * 9 8 7 31 31 H 0.96996 * 120.00160 * 179.97438 * 14 13 11 32 32 H 1.08999 * 109.47050 * 89.99476 * 20 19 10 33 33 H 1.09000 * 109.47258 * 209.99795 * 20 19 10 34 34 H 1.09006 * 109.47199 * 330.00265 * 20 19 10 35 35 H 1.08004 * 119.74048 * 180.23064 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.4302 2.2017 0.0005 5 6 3.6641 3.5502 -0.0054 6 6 2.5634 4.4206 0.0000 7 6 2.7657 5.8845 -0.0005 8 6 1.6575 6.7328 0.1109 9 6 1.8437 8.0854 0.1044 10 6 3.1625 8.5823 -0.0039 11 6 3.4067 9.9711 -0.0090 12 1 4.3638 10.3522 0.3157 13 6 2.4091 10.8556 -0.4348 14 7 1.3879 10.4092 -1.1198 15 14 2.5357 12.6737 -0.0247 16 1 3.2721 13.3750 -1.1069 17 1 1.1724 13.2492 0.0997 18 1 3.2633 12.8422 1.2587 19 6 4.2295 7.6669 -0.1064 20 6 5.6434 8.1748 -0.2234 21 7 3.9989 6.3748 -0.1015 22 6 1.2748 3.8842 0.0000 23 7 1.0932 2.5797 0.0000 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 4.2558 1.5053 0.0005 28 1 4.6729 3.9356 -0.0096 29 1 0.6629 6.3206 0.1972 30 1 1.0038 8.7594 0.1844 31 1 0.6963 11.0222 -1.4145 32 1 6.0730 8.2862 0.7722 33 1 6.2381 7.4650 -0.7984 34 1 5.6419 9.1408 -0.7285 35 1 0.4197 4.5440 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241632914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:59 Heat of formation + Delta-G solvation = 31.700921 kcal Electronic energy + Delta-G solvation = -18911.405854 eV Core-core repulsion = 15998.885944 eV Total energy + Delta-G solvation = -2912.519910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.17167 -40.03521 -36.20100 -34.35111 -33.52972 -32.57168 -31.53983 -29.72921 -28.79220 -27.15199 -24.72387 -24.58001 -22.61667 -21.92686 -19.35911 -19.02323 -17.82852 -17.22184 -16.96073 -16.35288 -15.91560 -15.60237 -15.44620 -14.98510 -14.87659 -14.49753 -14.30054 -14.15750 -13.78164 -13.52732 -13.38691 -13.26097 -13.04927 -12.92944 -12.66597 -12.58377 -12.22227 -11.69749 -11.56391 -11.35624 -10.93764 -10.73697 -10.62171 -10.21008 -9.97602 -9.38034 -8.80462 -8.37682 -6.41547 -0.31465 0.32011 0.60429 0.87281 1.09024 1.30199 1.39694 1.50599 1.56483 2.14559 2.53251 2.91108 3.52243 3.63877 3.68735 4.05552 4.07219 4.16840 4.32142 4.36545 4.39490 4.54619 4.67451 4.71791 4.88254 4.97280 4.98309 4.99474 5.05360 5.15350 5.23677 5.39646 5.49214 5.57363 5.80240 5.91800 5.97951 6.43126 6.65391 6.70252 6.77073 7.66525 8.13259 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.037243 B = 0.003397 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.646941 B = 8239.915112 C = 8911.691525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.077 6.077 3 C 0.074 3.926 4 C -0.140 4.140 5 C -0.063 4.063 6 C -0.051 4.051 7 C -0.012 4.012 8 C -0.129 4.129 9 C -0.163 4.163 10 C 0.046 3.954 11 C -0.450 4.450 12 H 0.098 0.902 13 C 0.034 3.966 14 N -0.805 5.805 15 Si 0.988 3.012 16 H -0.259 1.259 17 H -0.267 1.267 18 H -0.254 1.254 19 C -0.011 4.011 20 C -0.065 4.065 21 N -0.457 5.457 22 C 0.091 3.909 23 N -0.487 5.487 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.125 0.875 27 H 0.159 0.841 28 H 0.141 0.859 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.296 0.704 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.656 -9.404 1.710 9.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.160 5.840 3 C -0.175 4.175 4 C -0.166 4.166 5 C -0.090 4.090 6 C -0.057 4.057 7 C -0.146 4.146 8 C -0.149 4.149 9 C -0.188 4.188 10 C 0.041 3.959 11 C -0.477 4.477 12 H 0.116 0.884 13 C -0.185 4.185 14 N -0.429 5.429 15 Si 0.808 3.192 16 H -0.183 1.183 17 H -0.192 1.192 18 H -0.177 1.177 19 C -0.157 4.157 20 C -0.123 4.123 21 N -0.165 5.165 22 C -0.070 4.070 23 N -0.199 5.199 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.144 0.856 27 H 0.177 0.823 28 H 0.159 0.841 29 H 0.143 0.857 30 H 0.135 0.865 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.377 -11.313 1.508 11.419 hybrid contribution -0.990 2.977 0.038 3.137 sum -1.368 -8.336 1.545 8.588 Atomic orbital electron populations 1.23422 0.92376 1.07212 1.06354 1.85354 1.09811 0.96656 1.92136 1.23360 0.92233 0.99492 1.02388 1.21554 0.96746 0.96010 1.02241 1.21409 0.99754 0.92367 0.95471 1.19638 0.94699 0.92014 0.99320 1.18955 0.89087 0.91604 1.14989 1.21515 0.98592 0.94170 1.00633 1.21333 0.97925 0.94234 1.05298 1.18792 0.92362 0.95096 0.89686 1.19988 1.01095 0.90825 1.35839 0.88380 1.26968 0.93251 1.06737 0.91500 1.69831 1.09208 1.40333 1.23488 0.85093 0.79109 0.74811 0.80232 1.18344 1.19190 1.17731 1.21566 0.97028 0.88003 1.09075 1.20262 0.90106 1.00461 1.01456 1.66799 1.23268 1.16062 1.10390 1.22865 0.95975 0.90791 0.97337 1.67937 1.33420 1.03781 1.14789 0.89961 0.90037 0.85621 0.82345 0.84096 0.85743 0.86485 0.89308 0.91787 0.92060 0.91218 0.81726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 9.63 113.37 1.09 -1.32 16 2 S -0.08 -1.83 22.70 -56.49 -1.28 -3.11 16 3 C 0.07 2.30 6.98 84.86 0.59 2.89 16 4 C -0.14 -4.28 9.77 22.24 0.22 -4.07 16 5 C -0.06 -2.23 9.63 22.46 0.22 -2.01 16 6 C -0.05 -2.04 5.89 -19.92 -0.12 -2.16 16 7 C -0.01 -0.54 6.73 41.91 0.28 -0.26 16 8 C -0.13 -5.91 9.38 22.30 0.21 -5.70 16 9 C -0.16 -8.18 8.73 22.63 0.20 -7.98 16 10 C 0.05 2.31 5.58 -21.17 -0.12 2.19 16 11 C -0.45 -21.59 8.13 23.37 0.19 -21.40 16 12 H 0.10 4.38 6.87 -2.91 -0.02 4.36 16 13 C 0.03 1.52 5.18 85.26 0.44 1.96 16 14 N -0.80 -38.23 10.96 21.83 0.24 -37.99 16 15 Si 0.99 33.79 29.59 68.60 2.03 35.82 16 16 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 17 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16 18 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 19 C -0.01 -0.52 6.86 43.31 0.30 -0.22 16 20 C -0.07 -2.58 9.57 71.23 0.68 -1.89 16 21 N -0.46 -21.80 9.38 -171.02 -1.60 -23.41 16 22 C 0.09 3.27 10.58 85.04 0.90 4.17 16 23 N -0.49 -16.36 9.10 -190.83 -1.74 -18.09 16 24 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 25 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 26 H 0.13 1.64 8.14 -2.40 -0.02 1.62 16 27 H 0.16 3.85 8.06 -2.91 -0.02 3.82 16 28 H 0.14 4.99 7.61 -2.91 -0.02 4.97 16 29 H 0.12 4.91 6.20 -2.91 -0.02 4.89 16 30 H 0.12 5.96 6.27 -2.91 -0.02 5.95 16 31 H 0.30 12.59 8.30 -92.71 -0.77 11.82 16 32 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.07 2.67 6.77 -2.38 -0.02 2.65 16 35 H 0.17 5.45 6.20 -2.91 -0.02 5.43 16 Total: -1.00 -56.81 312.62 3.85 -52.96 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 1.12 Total: 29.63 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 5.08 Total: -35.81 kcal Atomic # 7 Polarization: -76.39 SS G_CDS: -3.10 Total: -79.49 kcal Atomic # 14 Polarization: 33.79 SS G_CDS: 2.03 Total: 35.82 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -1.28 Total: -3.11 kcal Total: -56.81 3.85 -52.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241632914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.665 kcal (2) G-P(sol) polarization free energy of solvation -56.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds