Wall clock time and date at job start Tue Mar 31 2020 06:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21250 * 119.99848 * 2 1 4 4 C 1.47336 * 120.00552 * 179.97438 * 2 1 3 5 5 C 1.39718 * 119.61464 * 180.02562 * 4 2 1 6 6 C 1.38218 * 119.17229 * 179.76747 * 5 4 2 7 7 C 1.39824 * 118.39851 * 0.44911 * 6 5 4 8 8 C 1.48184 * 120.42417 * 179.80066 * 7 6 5 9 9 C 1.39144 * 120.42888 * 129.71973 * 8 7 6 10 10 C 1.40922 * 118.11781 * 180.02562 * 9 8 7 11 11 C 1.41390 * 120.56792 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99863 * 155.74201 * 11 10 9 13 13 C 1.39899 * 120.00026 * 335.74905 * 11 10 9 14 14 N 1.30856 * 120.00194 * 343.49639 * 13 11 10 15 15 Si 1.86803 * 120.00048 * 163.49591 * 13 11 10 16 16 H 1.48492 * 109.47285 * 94.73673 * 15 13 11 17 17 H 1.48498 * 109.46952 * 214.73890 * 15 13 11 18 18 H 1.48502 * 109.46964 * 334.73881 * 15 13 11 19 19 C 1.40816 * 118.86651 * 0.02562 * 10 9 8 20 20 N 1.31498 * 120.71916 * 359.97438 * 19 10 9 21 21 C 1.32162 * 122.09558 * 0.02562 * 20 19 10 22 22 F 1.35099 * 119.46723 * 179.97438 * 21 20 19 23 23 C 1.39855 * 119.14684 * 359.52838 * 7 6 5 24 24 N 1.31234 * 120.75466 * 0.25194 * 23 7 6 25 25 H 1.08997 * 109.47033 * 269.99916 * 1 2 3 26 26 H 1.08997 * 109.47130 * 30.00547 * 1 2 3 27 27 H 1.09004 * 109.46871 * 150.00054 * 1 2 3 28 28 H 1.08006 * 120.41531 * 359.97438 * 5 4 2 29 29 H 1.08001 * 120.80290 * 180.23234 * 6 5 4 30 30 H 1.08003 * 120.94093 * 0.04823 * 9 8 7 31 31 H 0.97000 * 120.00439 * 180.02562 * 14 13 11 32 32 H 1.07994 * 119.64127 * 179.71519 * 19 10 9 33 33 H 1.08005 * 119.62103 * 180.27291 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2438 -1.2759 0.0006 5 6 3.6409 -1.2664 0.0011 6 6 4.3229 -2.4686 0.0065 7 6 3.5812 -3.6539 0.0017 8 6 4.2663 -4.9678 0.0027 9 6 3.9083 -5.9485 0.9226 10 6 4.5921 -7.1800 0.8805 11 6 4.2707 -8.2125 1.7913 12 1 4.4819 -9.2410 1.5382 13 6 3.6788 -7.9019 3.0203 14 7 3.7134 -6.6741 3.4715 15 14 2.8389 -9.2400 4.0172 16 1 3.7945 -9.7897 5.0120 17 1 1.6642 -8.6680 4.7228 18 1 2.3905 -10.3261 3.1091 19 6 5.6018 -7.3643 -0.0837 20 7 5.9036 -6.4059 -0.9319 21 6 5.2839 -5.2385 -0.9221 22 9 5.6372 -4.2910 -1.8179 23 6 2.1844 -3.5834 0.0016 24 7 1.5710 -2.4232 0.0011 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 4.1814 -0.3312 0.0007 29 1 5.4026 -2.4919 0.0109 30 1 3.1283 -5.7710 1.6482 31 1 3.3034 -6.4588 4.3238 32 1 6.1370 -8.3014 -0.1242 33 1 1.6039 -4.4942 0.0023 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242401935.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:14 Heat of formation + Delta-G solvation = -39.747114 kcal Electronic energy + Delta-G solvation = -21114.087031 eV Core-core repulsion = 17632.255726 eV Total energy + Delta-G solvation = -3481.831305 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.086 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.49301 -41.64031 -40.31380 -39.62297 -36.04936 -34.91563 -33.27178 -32.29730 -31.63560 -29.91974 -27.43578 -25.79813 -24.97264 -23.55973 -22.86303 -21.38207 -19.42037 -18.58868 -18.24002 -17.98445 -17.36797 -17.18474 -16.55462 -16.39060 -16.27458 -15.60102 -15.52233 -15.10136 -14.64291 -14.55232 -14.24353 -14.19727 -13.91170 -13.68268 -13.39362 -13.11651 -13.03131 -13.01092 -12.83747 -12.32622 -11.90262 -11.42940 -11.26254 -11.18579 -10.76075 -10.62218 -10.27705 -9.94747 -9.39743 -8.81445 -6.52859 -0.80177 0.10807 0.42031 0.75836 1.20581 1.43966 1.49633 1.59476 2.17242 2.52107 2.69192 2.69697 3.18974 3.32059 3.42093 3.56983 3.78333 3.89834 4.07001 4.15607 4.21563 4.54124 4.60296 4.63831 4.68610 4.79357 4.87770 5.00686 5.08872 5.14470 5.18099 5.41706 5.52227 5.69669 5.85551 6.20093 6.31827 6.56459 6.62041 6.69060 7.28449 8.12589 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.016676 B = 0.004910 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.612957 B = 5701.675342 C = 7033.494198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.420 3.580 3 O -0.482 6.482 4 C 0.015 3.985 5 C -0.109 4.109 6 C -0.077 4.077 7 C -0.051 4.051 8 C -0.097 4.097 9 C -0.106 4.106 10 C 0.036 3.964 11 C -0.453 4.453 12 H 0.100 0.900 13 C 0.039 3.961 14 N -0.808 5.808 15 Si 0.987 3.013 16 H -0.264 1.264 17 H -0.267 1.267 18 H -0.252 1.252 19 C 0.003 3.997 20 N -0.502 5.502 21 C 0.140 3.860 22 F -0.144 7.144 23 C 0.106 3.894 24 N -0.436 5.436 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.159 0.841 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.297 0.703 32 H 0.158 0.842 33 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.246 4.977 0.008 8.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.299 3.701 3 O -0.357 6.357 4 C -0.120 4.120 5 C -0.129 4.129 6 C -0.102 4.102 7 C -0.054 4.054 8 C -0.102 4.102 9 C -0.131 4.131 10 C 0.031 3.969 11 C -0.481 4.481 12 H 0.118 0.882 13 C -0.179 4.179 14 N -0.432 5.432 15 Si 0.807 3.193 16 H -0.188 1.188 17 H -0.192 1.192 18 H -0.175 1.175 19 C -0.159 4.159 20 N -0.213 5.213 21 C -0.014 4.014 22 F -0.124 7.124 23 C -0.055 4.055 24 N -0.147 5.147 25 H 0.132 0.868 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.177 0.823 29 H 0.159 0.841 30 H 0.155 0.845 31 H 0.108 0.892 32 H 0.175 0.825 33 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.251 5.713 -0.446 9.242 hybrid contribution 0.641 -0.422 0.820 1.123 sum -6.610 5.291 0.373 8.475 Atomic orbital electron populations 1.22107 0.89584 1.05995 1.06146 1.22739 0.93567 0.84915 0.68929 1.90529 1.73282 1.33925 1.37950 1.22067 0.92068 0.94763 1.03100 1.22321 0.94722 0.99361 0.96480 1.21781 1.01280 0.91146 0.96037 1.20077 0.95313 0.92810 0.97158 1.19092 0.98195 0.94672 0.98218 1.21764 1.00653 0.92902 0.97817 1.18792 0.90845 0.93891 0.93379 1.19959 1.33478 0.95291 0.99393 0.88200 1.26859 0.93648 0.98788 0.98610 1.69788 1.31994 1.21890 1.19499 0.85075 0.78193 0.78038 0.77945 1.18832 1.19155 1.17542 1.22637 0.99313 0.97354 0.96569 1.66275 1.28247 1.00849 1.25974 1.17697 1.01167 0.87361 0.95137 1.91396 1.92224 1.61641 1.67117 1.23090 0.90568 0.96218 0.95576 1.67598 1.40001 0.97507 1.09557 0.86787 0.88107 0.88173 0.82318 0.84125 0.84465 0.89161 0.82491 0.80751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 10.02 71.24 0.71 -2.48 16 2 C 0.42 10.80 7.23 28.08 0.20 11.01 16 3 O -0.48 -14.47 17.05 -2.94 -0.05 -14.52 16 4 C 0.02 0.46 6.73 41.72 0.28 0.74 16 5 C -0.11 -3.30 9.62 22.62 0.22 -3.08 16 6 C -0.08 -2.63 9.01 22.65 0.20 -2.42 16 7 C -0.05 -1.90 5.34 -19.86 -0.11 -2.01 16 8 C -0.10 -4.25 5.50 -19.95 -0.11 -4.36 16 9 C -0.11 -4.87 8.30 23.15 0.19 -4.68 16 10 C 0.04 1.69 5.59 -21.22 -0.12 1.57 16 11 C -0.45 -20.33 9.08 23.45 0.21 -20.12 16 12 H 0.10 4.16 7.90 -2.91 -0.02 4.13 16 13 C 0.04 1.65 5.19 85.24 0.44 2.09 16 14 N -0.81 -35.92 10.90 21.82 0.24 -35.68 16 15 Si 0.99 31.80 29.59 68.60 2.03 33.83 16 16 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 17 H -0.27 -8.34 7.11 99.48 0.71 -7.63 16 18 H -0.25 -7.90 7.11 99.48 0.71 -7.20 16 19 C 0.00 0.14 10.96 85.37 0.94 1.08 16 20 N -0.50 -24.11 10.33 -193.66 -2.00 -26.11 16 21 C 0.14 6.50 8.32 85.11 0.71 7.21 16 22 F -0.14 -6.42 15.98 44.97 0.72 -5.70 16 23 C 0.11 3.54 10.70 85.17 0.91 4.46 16 24 N -0.44 -13.31 9.41 -184.34 -1.73 -15.05 16 25 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.10 1.73 7.60 -2.38 -0.02 1.71 16 28 H 0.16 4.22 7.63 -2.91 -0.02 4.20 16 29 H 0.14 4.70 7.87 -2.91 -0.02 4.67 16 30 H 0.14 6.32 6.20 -2.91 -0.02 6.30 16 31 H 0.30 11.91 8.30 -92.71 -0.77 11.14 16 32 H 0.16 6.43 8.06 -2.91 -0.02 6.40 16 33 H 0.18 5.35 8.05 -2.91 -0.02 5.32 16 Total: -1.00 -54.78 304.04 5.05 -49.73 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 1.16 Total: 24.51 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: 4.69 Total: -11.00 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -3.50 Total: -76.85 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.05 Total: -14.52 kcal Atomic # 9 Polarization: -6.42 SS G_CDS: 0.72 Total: -5.70 kcal Atomic # 14 Polarization: 31.80 SS G_CDS: 2.03 Total: 33.83 kcal Total: -54.78 5.05 -49.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242401935.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.986 kcal (2) G-P(sol) polarization free energy of solvation -54.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds