Wall clock time and date at job start Tue Mar 31 2020 06:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38391 * 119.92208 * 2 1 4 4 C 1.38482 * 120.27474 * 179.97438 * 3 2 1 5 5 Cl 1.73603 * 119.93619 * 179.74739 * 4 3 2 6 6 C 1.38074 * 120.12254 * 0.02994 * 4 3 2 7 7 C 1.39569 * 119.83520 * 0.02562 * 6 4 3 8 8 C 1.47991 * 120.13468 * 180.02562 * 7 6 4 9 9 C 1.39950 * 119.88363 * 129.95334 * 8 7 6 10 10 C 1.36234 * 120.12467 * 179.97438 * 9 8 7 11 11 C 1.40946 * 119.87803 * 0.02562 * 10 9 8 12 12 C 1.41029 * 120.12175 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99695 * 24.68165 * 12 11 10 14 14 C 1.40013 * 119.99961 * 204.67948 * 12 11 10 15 15 N 1.30789 * 120.00003 * 17.96188 * 14 12 11 16 16 Si 1.86803 * 119.99781 * 197.96105 * 14 12 11 17 17 H 1.48501 * 109.46940 * 94.69201 * 16 14 12 18 18 H 1.48495 * 109.47040 * 214.69445 * 16 14 12 19 19 H 1.48508 * 109.47072 * 334.69526 * 16 14 12 20 20 C 1.40918 * 119.76117 * 359.97438 * 11 10 9 21 21 C 1.36272 * 119.87816 * 359.74378 * 20 11 10 22 22 C 1.50700 * 119.93634 * 180.25438 * 21 20 11 23 23 C 1.37919 * 119.91538 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47219 * 89.99388 * 1 2 3 25 25 H 1.08998 * 109.47514 * 210.00243 * 1 2 3 26 26 H 1.09009 * 109.46693 * 329.99631 * 1 2 3 27 27 H 1.07992 * 119.85949 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.08122 * 179.97438 * 6 4 3 29 29 H 1.08005 * 119.93645 * 0.02562 * 9 8 7 30 30 H 1.08004 * 120.06497 * 179.97438 * 10 9 8 31 31 H 0.97003 * 119.99535 * 180.02562 * 15 14 12 32 32 H 1.08004 * 120.05742 * 180.02562 * 20 11 10 33 33 H 1.09002 * 109.46576 * 270.25688 * 22 21 20 34 34 H 1.08993 * 109.47294 * 30.25947 * 22 21 20 35 35 H 1.08999 * 109.46825 * 150.26396 * 22 21 20 36 36 H 1.07995 * 120.06523 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5821 1.2080 0.0005 5 17 4.4392 2.7177 -0.0061 6 6 4.2824 0.0180 0.0004 7 6 3.5911 -1.1945 -0.0007 8 6 4.3350 -2.4739 -0.0003 9 6 4.0108 -3.4686 0.9292 10 6 4.6920 -4.6484 0.9337 11 6 5.7254 -4.8660 0.0003 12 6 6.4344 -6.0851 0.0007 13 1 5.9747 -6.9769 0.4005 14 6 7.7340 -6.1394 -0.5173 15 7 8.4220 -5.0382 -0.6740 16 14 8.4852 -7.7846 -0.9847 17 1 8.2710 -8.0330 -2.4330 18 1 9.9417 -7.7636 -0.6961 19 1 7.8399 -8.8652 -0.1964 20 6 6.0477 -3.8609 -0.9334 21 6 5.3561 -2.6868 -0.9329 22 6 5.6958 -1.6133 -1.9345 23 6 2.1949 -1.1954 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6538 2.1326 0.0004 28 1 5.3624 0.0254 0.0004 29 1 3.2185 -3.3010 1.6438 30 1 4.4413 -5.4152 1.6517 31 1 9.3223 -5.0758 -1.0332 32 1 6.8385 -4.0228 -1.6511 33 1 6.4605 -0.9573 -1.5186 34 1 6.0705 -2.0745 -2.8483 35 1 4.8022 -1.0318 -2.1609 36 1 1.6546 -2.1305 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242518511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:21 Heat of formation + Delta-G solvation = 10.366913 kcal Electronic energy + Delta-G solvation = -19175.118586 eV Core-core repulsion = 16227.337107 eV Total energy + Delta-G solvation = -2947.781479 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.34132 -37.60764 -36.24451 -34.22733 -32.64388 -31.47127 -31.05479 -28.77041 -26.81981 -25.86518 -25.32508 -22.40209 -21.24015 -20.39037 -19.39795 -17.20825 -16.42085 -15.45570 -15.36070 -15.08806 -14.21936 -14.05482 -13.70166 -13.51996 -13.14771 -12.73806 -12.64624 -12.55874 -12.24643 -11.92297 -11.83602 -11.57787 -11.39207 -11.21161 -11.18079 -11.00380 -10.86617 -10.77634 -10.48467 -10.30670 -9.68080 -9.53301 -9.31924 -8.41520 -8.32783 -7.46449 -7.25536 -6.90453 -4.46478 1.47690 1.56160 2.35332 2.66811 2.99129 3.01985 3.03369 3.10509 3.81828 3.99378 4.49391 4.98319 5.12226 5.31338 5.52849 5.56892 5.61986 5.65116 5.76576 5.90092 5.99212 6.05676 6.14081 6.29089 6.35980 6.40815 6.54752 6.61880 6.72366 6.82271 6.88927 6.97037 7.15976 7.24763 7.26569 7.52595 7.80242 7.94082 8.03088 8.16953 8.49773 8.73991 8.85074 10.01153 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.025338 B = 0.004019 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.789673 B = 6966.030875 C = 7753.416430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.076 4.076 3 C -0.142 4.142 4 C -0.025 4.025 5 Cl -0.089 7.089 6 C -0.122 4.122 7 C 0.037 3.963 8 C -0.209 4.209 9 C -0.060 4.060 10 C -0.233 4.233 11 C 0.120 3.880 12 C -0.452 4.452 13 H 0.081 0.919 14 C 0.075 3.925 15 N -0.780 5.780 16 Si 0.910 3.090 17 H -0.267 1.267 18 H -0.276 1.276 19 H -0.260 1.260 20 C -0.168 4.168 21 C -0.045 4.045 22 C -0.106 4.106 23 C -0.126 4.126 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.122 0.878 28 H 0.130 0.870 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.283 0.717 32 H 0.120 0.880 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.872 8.046 -0.757 11.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.076 4.076 3 C -0.161 4.161 4 C -0.051 4.051 5 Cl -0.060 7.060 6 C -0.141 4.141 7 C 0.037 3.963 8 C -0.210 4.210 9 C -0.078 4.078 10 C -0.252 4.252 11 C 0.117 3.883 12 C -0.480 4.480 13 H 0.099 0.901 14 C -0.145 4.145 15 N -0.404 5.404 16 Si 0.734 3.266 17 H -0.192 1.192 18 H -0.201 1.201 19 H -0.184 1.184 20 C -0.188 4.188 21 C -0.045 4.045 22 C -0.163 4.163 23 C -0.144 4.144 24 H 0.087 0.913 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.140 0.860 28 H 0.148 0.852 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.095 0.905 32 H 0.137 0.863 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.544 8.264 -0.823 11.220 hybrid contribution 0.639 -0.529 -0.128 0.839 sum -6.905 7.735 -0.951 10.413 Atomic orbital electron populations 1.20751 0.91150 1.02558 1.02182 1.19686 0.95780 0.92478 0.99660 1.20695 0.91743 0.98036 1.05652 1.20783 0.92256 0.86290 1.05798 1.98334 1.77761 1.32775 1.97141 1.21295 1.00499 0.90001 1.02268 1.18882 0.92119 0.92606 0.92738 1.17825 1.04156 0.93887 1.05140 1.20259 0.97628 0.93283 0.96656 1.20649 1.04028 0.97720 1.02808 1.17692 0.89753 0.92490 0.88348 1.19685 0.98020 0.96167 1.34112 0.90083 1.25996 0.97217 0.98341 0.92905 1.69817 1.10309 1.29275 1.30969 0.86264 0.78361 0.82047 0.79939 1.19158 1.20118 1.18400 1.20866 1.02184 0.94099 1.01607 1.19220 0.94581 0.95307 0.95428 1.20787 1.00397 0.97436 0.97684 1.21306 0.93725 0.97290 1.02070 0.91295 0.91457 0.91797 0.86001 0.85178 0.89229 0.88806 0.90547 0.86263 0.92497 0.92853 0.92841 0.85830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.08 -1.06 5.87 -104.68 -0.61 -1.68 16 3 C -0.14 -2.02 9.48 -39.44 -0.37 -2.39 16 4 C -0.02 -0.39 6.31 -39.55 -0.25 -0.64 16 5 Cl -0.09 -1.25 28.95 -51.86 -1.50 -2.75 16 6 C -0.12 -2.13 7.68 -39.15 -0.30 -2.43 16 7 C 0.04 0.69 4.70 -104.89 -0.49 0.19 16 8 C -0.21 -4.50 5.50 -104.63 -0.58 -5.07 16 9 C -0.06 -1.31 9.43 -39.66 -0.37 -1.68 16 10 C -0.23 -5.52 9.73 -39.28 -0.38 -5.90 16 11 C 0.12 3.08 5.57 -106.80 -0.60 2.48 16 12 C -0.45 -11.48 9.03 -37.86 -0.34 -11.82 16 13 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 14 C 0.08 1.80 5.13 -17.33 -0.09 1.71 16 15 N -0.78 -19.32 10.96 55.55 0.61 -18.72 16 16 Si 0.91 17.84 29.60 -169.99 -5.03 12.81 16 17 H -0.27 -5.18 7.11 56.52 0.40 -4.77 16 18 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 C -0.17 -4.21 8.26 -39.28 -0.32 -4.54 16 21 C -0.04 -1.01 5.83 -104.70 -0.61 -1.62 16 22 C -0.11 -2.03 8.44 36.01 0.30 -1.73 16 23 C -0.13 -2.05 9.15 -39.18 -0.36 -2.41 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 26 H 0.06 0.58 8.08 -51.92 -0.42 0.16 16 27 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.13 2.33 6.86 -52.49 -0.36 1.97 16 29 H 0.09 1.74 8.03 -52.48 -0.42 1.32 16 30 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 31 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 32 H 0.12 3.08 6.16 -52.48 -0.32 2.76 16 33 H 0.06 1.04 7.49 -51.93 -0.39 0.65 16 34 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 35 H 0.05 0.96 6.45 -51.93 -0.33 0.63 16 36 H 0.12 1.92 8.04 -52.49 -0.42 1.50 16 LS Contribution 318.69 15.07 4.80 4.80 Total: -1.00 -25.73 318.69 -10.47 -36.20 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.33 Total: 5.97 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: -5.02 Total: -38.32 kcal Atomic # 7 Polarization: -19.32 SS G_CDS: 0.61 Total: -18.72 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Atomic # 17 Polarization: -1.25 SS G_CDS: -1.50 Total: -2.75 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -25.73 -10.47 -36.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242518511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.564 kcal (2) G-P(sol) polarization free energy of solvation -25.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds