Wall clock time and date at job start Tue Mar 31 2020 06:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38391 * 119.92208 * 2 1 4 4 C 1.38482 * 120.27474 * 179.97438 * 3 2 1 5 5 Cl 1.73603 * 119.93619 * 179.74739 * 4 3 2 6 6 C 1.38074 * 120.12254 * 0.02994 * 4 3 2 7 7 C 1.39569 * 119.83520 * 0.02562 * 6 4 3 8 8 C 1.47991 * 120.13468 * 180.02562 * 7 6 4 9 9 C 1.39950 * 119.88363 * 129.95334 * 8 7 6 10 10 C 1.36234 * 120.12467 * 179.97438 * 9 8 7 11 11 C 1.40946 * 119.87803 * 0.02562 * 10 9 8 12 12 C 1.41029 * 120.12175 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99695 * 24.68165 * 12 11 10 14 14 C 1.40013 * 119.99961 * 204.67948 * 12 11 10 15 15 N 1.30789 * 120.00003 * 17.96188 * 14 12 11 16 16 Si 1.86803 * 119.99781 * 197.96105 * 14 12 11 17 17 H 1.48501 * 109.46940 * 94.69201 * 16 14 12 18 18 H 1.48495 * 109.47040 * 214.69445 * 16 14 12 19 19 H 1.48508 * 109.47072 * 334.69526 * 16 14 12 20 20 C 1.40918 * 119.76117 * 359.97438 * 11 10 9 21 21 C 1.36272 * 119.87816 * 359.74378 * 20 11 10 22 22 C 1.50700 * 119.93634 * 180.25438 * 21 20 11 23 23 C 1.37919 * 119.91538 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47219 * 89.99388 * 1 2 3 25 25 H 1.08998 * 109.47514 * 210.00243 * 1 2 3 26 26 H 1.09009 * 109.46693 * 329.99631 * 1 2 3 27 27 H 1.07992 * 119.85949 * 0.02562 * 3 2 1 28 28 H 1.08000 * 120.08122 * 179.97438 * 6 4 3 29 29 H 1.08005 * 119.93645 * 0.02562 * 9 8 7 30 30 H 1.08004 * 120.06497 * 179.97438 * 10 9 8 31 31 H 0.97003 * 119.99535 * 180.02562 * 15 14 12 32 32 H 1.08004 * 120.05742 * 180.02562 * 20 11 10 33 33 H 1.09002 * 109.46576 * 270.25688 * 22 21 20 34 34 H 1.08993 * 109.47294 * 30.25947 * 22 21 20 35 35 H 1.08999 * 109.46825 * 150.26396 * 22 21 20 36 36 H 1.07995 * 120.06523 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5821 1.2080 0.0005 5 17 4.4392 2.7177 -0.0061 6 6 4.2824 0.0180 0.0004 7 6 3.5911 -1.1945 -0.0007 8 6 4.3350 -2.4739 -0.0003 9 6 4.0108 -3.4686 0.9292 10 6 4.6920 -4.6484 0.9337 11 6 5.7254 -4.8660 0.0003 12 6 6.4344 -6.0851 0.0007 13 1 5.9747 -6.9769 0.4005 14 6 7.7340 -6.1394 -0.5173 15 7 8.4220 -5.0382 -0.6740 16 14 8.4852 -7.7846 -0.9847 17 1 8.2710 -8.0330 -2.4330 18 1 9.9417 -7.7636 -0.6961 19 1 7.8399 -8.8652 -0.1964 20 6 6.0477 -3.8609 -0.9334 21 6 5.3561 -2.6868 -0.9329 22 6 5.6958 -1.6133 -1.9345 23 6 2.1949 -1.1954 -0.0005 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6538 2.1326 0.0004 28 1 5.3624 0.0254 0.0004 29 1 3.2185 -3.3010 1.6438 30 1 4.4413 -5.4152 1.6517 31 1 9.3223 -5.0758 -1.0332 32 1 6.8385 -4.0228 -1.6511 33 1 6.4605 -0.9573 -1.5186 34 1 6.0705 -2.0745 -2.8483 35 1 4.8022 -1.0318 -2.1609 36 1 1.6546 -2.1305 -0.0014 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242518511.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:20 Heat of formation + Delta-G solvation = 1.471380 kcal Electronic energy + Delta-G solvation = -19175.504326 eV Core-core repulsion = 16227.337107 eV Total energy + Delta-G solvation = -2948.167219 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72666 -39.21985 -37.42257 -35.92522 -34.08000 -33.03091 -32.48139 -30.39402 -28.00152 -27.43925 -27.00477 -23.90419 -22.55273 -22.04781 -21.01342 -19.04323 -17.74145 -17.10456 -16.66834 -16.45339 -15.71792 -15.60969 -15.30292 -14.71974 -14.51555 -14.36526 -14.00707 -13.68502 -13.58813 -13.43121 -13.22025 -13.07683 -12.95758 -12.79774 -12.57474 -12.45246 -12.13125 -12.10828 -12.00501 -11.79876 -11.37811 -11.25778 -11.05846 -9.84067 -9.52891 -9.27414 -8.97299 -8.67454 -6.35113 0.15781 0.31508 0.98685 1.16090 1.19419 1.37591 1.51121 1.51959 2.18184 2.59283 2.82370 3.67597 3.89754 3.91377 4.19660 4.33819 4.36361 4.37796 4.47180 4.55809 4.66504 4.81202 4.87467 4.89421 4.96082 5.02568 5.09051 5.11844 5.26584 5.28137 5.31452 5.46992 5.55345 5.65705 5.73088 5.87596 6.08102 6.10084 6.24108 6.34688 6.65519 6.88607 7.00975 8.26484 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.025338 B = 0.004019 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.789673 B = 6966.030875 C = 7753.416430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.068 4.068 3 C -0.131 4.131 4 C -0.030 4.030 5 Cl -0.075 7.075 6 C -0.131 4.131 7 C 0.010 3.990 8 C -0.199 4.199 9 C -0.065 4.065 10 C -0.249 4.249 11 C 0.088 3.912 12 C -0.492 4.492 13 H 0.078 0.922 14 C 0.037 3.963 15 N -0.815 5.815 16 Si 0.983 3.017 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.257 1.257 20 C -0.192 4.192 21 C -0.056 4.056 22 C -0.097 4.097 23 C -0.129 4.129 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.152 0.848 28 H 0.118 0.882 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.290 0.710 32 H 0.102 0.898 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.815 9.745 -0.897 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.068 4.068 3 C -0.149 4.149 4 C -0.057 4.057 5 Cl -0.046 7.046 6 C -0.150 4.150 7 C 0.009 3.991 8 C -0.200 4.200 9 C -0.083 4.083 10 C -0.268 4.268 11 C 0.085 3.915 12 C -0.521 4.521 13 H 0.096 0.904 14 C -0.180 4.180 15 N -0.440 5.440 16 Si 0.803 3.197 17 H -0.186 1.186 18 H -0.191 1.191 19 H -0.181 1.181 20 C -0.211 4.211 21 C -0.057 4.057 22 C -0.153 4.153 23 C -0.147 4.147 24 H 0.101 0.899 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.169 0.831 28 H 0.136 0.864 29 H 0.133 0.867 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.501 9.981 -0.957 13.813 hybrid contribution 1.057 -0.780 -0.042 1.315 sum -8.444 9.200 -1.000 12.527 Atomic orbital electron populations 1.20846 0.88139 1.04040 1.03518 1.20074 0.97838 0.91382 0.97553 1.21103 0.91171 0.99379 1.03259 1.20863 0.93024 0.86270 1.05512 1.98341 1.77692 1.31527 1.97049 1.21170 1.00037 0.90592 1.03193 1.18740 0.93111 0.91431 0.95771 1.18194 1.03150 0.95060 1.03577 1.20551 0.97937 0.92706 0.97112 1.20838 1.04250 0.98868 1.02885 1.18037 0.90895 0.93218 0.89316 1.19893 0.99314 0.96243 1.36602 0.90381 1.26804 0.97046 1.01969 0.92141 1.69868 1.10912 1.31334 1.31895 0.85183 0.77650 0.77309 0.79558 1.18642 1.19144 1.18072 1.20836 1.02921 0.95410 1.01951 1.19608 0.94500 0.95272 0.96295 1.20730 1.01103 0.96598 0.96915 1.21421 0.92745 0.98703 1.01817 0.89874 0.90709 0.89717 0.83075 0.86420 0.86719 0.88311 0.89903 0.87974 0.91817 0.92546 0.91564 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.77 10.01 71.24 0.71 -1.06 16 2 C -0.07 -1.66 5.87 -19.90 -0.12 -1.77 16 3 C -0.13 -3.18 9.48 22.36 0.21 -2.97 16 4 C -0.03 -0.86 6.31 22.29 0.14 -0.72 16 5 Cl -0.07 -1.92 28.95 -2.72 -0.08 -2.00 16 6 C -0.13 -4.42 7.68 22.55 0.17 -4.25 16 7 C 0.01 0.35 4.70 -20.04 -0.09 0.26 16 8 C -0.20 -8.60 5.50 -19.87 -0.11 -8.71 16 9 C -0.06 -2.87 9.43 22.22 0.21 -2.66 16 10 C -0.25 -12.26 9.73 22.47 0.22 -12.04 16 11 C 0.09 4.75 5.57 -21.28 -0.12 4.63 16 12 C -0.49 -26.35 9.03 23.38 0.21 -26.14 16 13 H 0.08 4.03 7.91 -2.91 -0.02 4.00 16 14 C 0.04 1.83 5.13 85.28 0.44 2.27 16 15 N -0.82 -42.19 10.96 21.84 0.24 -41.95 16 16 Si 0.98 37.56 29.60 68.60 2.03 39.59 16 17 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 18 H -0.27 -9.69 7.11 99.48 0.71 -8.99 16 19 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 20 C -0.19 -10.08 8.26 22.47 0.19 -9.90 16 21 C -0.06 -2.61 5.83 -19.92 -0.12 -2.73 16 22 C -0.10 -3.73 8.44 71.24 0.60 -3.13 16 23 C -0.13 -3.90 9.15 22.53 0.21 -3.69 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.14 8.08 -2.39 -0.02 1.12 16 26 H 0.08 1.07 8.08 -2.38 -0.02 1.05 16 27 H 0.15 2.83 8.06 -2.91 -0.02 2.80 16 28 H 0.12 4.19 6.86 -2.91 -0.02 4.17 16 29 H 0.11 4.37 8.03 -2.91 -0.02 4.34 16 30 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 31 H 0.29 13.51 8.30 -92.71 -0.77 12.74 16 32 H 0.10 5.61 6.16 -2.91 -0.02 5.59 16 33 H 0.06 2.34 7.49 -2.39 -0.02 2.32 16 34 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 35 H 0.07 2.35 6.45 -2.39 -0.02 2.33 16 36 H 0.13 3.71 8.04 -2.91 -0.02 3.68 16 Total: -1.00 -57.87 318.69 6.03 -51.84 By element: Atomic # 1 Polarization: 24.05 SS G_CDS: 1.09 Total: 25.13 kcal Atomic # 6 Polarization: -75.37 SS G_CDS: 2.75 Total: -72.62 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.24 Total: -41.95 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.08 Total: -2.00 kcal Total: -57.87 6.03 -51.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242518511.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.313 kcal (2) G-P(sol) polarization free energy of solvation -57.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds