Wall clock time and date at job start Tue Mar 31 2020 05:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35873 * 117.00303 * 2 1 4 4 C 1.39461 * 119.77706 * 0.02562 * 3 2 1 5 5 C 1.37957 * 120.61420 * 179.71403 * 4 3 2 6 6 C 1.39160 * 120.16622 * 0.52077 * 5 4 3 7 7 C 1.47849 * 120.22063 * 179.75923 * 6 5 4 8 8 C 1.39743 * 120.11036 * 129.71971 * 7 6 5 9 9 C 1.37964 * 120.00841 * 180.02562 * 8 7 6 10 10 C 1.38257 * 120.23409 * 0.28291 * 9 8 7 11 11 C 1.39107 * 120.22534 * 359.44018 * 10 9 8 12 12 S 1.76201 * 120.01010 * 180.28160 * 11 10 9 13 13 C 1.38694 * 119.99010 * 0.55674 * 11 10 9 14 14 C 1.41895 * 119.56160 * 359.48809 * 6 5 4 15 15 C 1.40889 * 120.30198 * 180.27816 * 14 6 5 16 16 H 1.08009 * 119.99924 * 332.97065 * 15 14 6 17 17 C 1.40042 * 120.00286 * 152.96951 * 15 14 6 18 18 N 1.30784 * 120.00255 * 344.44758 * 17 15 14 19 19 Si 1.86808 * 120.00170 * 164.44758 * 17 15 14 20 20 H 1.48501 * 109.46798 * 60.00013 * 19 17 15 21 21 H 1.48496 * 109.47201 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47110 * 300.00468 * 19 17 15 23 23 C 1.37931 * 119.78167 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47138 * 299.99450 * 1 2 3 25 25 H 1.09001 * 109.47492 * 59.99411 * 1 2 3 26 26 H 1.09004 * 109.47162 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.69694 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.91661 * 180.25172 * 5 4 3 29 29 H 1.08007 * 119.99948 * 0.04706 * 8 7 6 30 30 H 1.07997 * 119.88086 * 179.97438 * 9 8 7 31 31 H 1.08001 * 119.89061 * 179.70370 * 10 9 8 32 32 H 1.34506 * 102.99938 * 270.27870 * 12 11 10 33 33 H 1.07993 * 120.12299 * 179.69974 * 13 11 10 34 34 H 0.96994 * 120.00272 * 180.02562 * 18 17 15 35 35 H 1.07993 * 120.09473 * 0.04926 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2818 2.3773 0.0005 5 6 1.8901 3.6155 0.0065 6 6 3.2783 3.7126 0.0011 7 6 3.9315 5.0390 0.0021 8 6 4.9381 5.3241 0.9286 9 6 5.5458 6.5626 0.9279 10 6 5.1588 7.5275 0.0166 11 6 4.1619 7.2523 -0.9138 12 16 3.6782 8.4838 -2.0775 13 6 3.5446 6.0103 -0.9216 14 6 4.0628 2.5302 0.0004 15 6 5.4694 2.6104 0.0009 16 1 5.9613 3.4733 -0.4234 17 6 6.2299 1.5713 0.5515 18 7 5.6613 0.6845 1.3266 19 14 8.0565 1.4518 0.1791 20 1 8.7391 2.6840 0.6491 21 1 8.6281 0.2727 0.8777 22 1 8.2545 1.3043 -1.2853 23 6 3.4235 1.2775 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.2038 2.3109 0.0005 28 1 1.2875 4.5117 0.0109 29 1 5.2406 4.5746 1.6450 30 1 6.3232 6.7809 1.6452 31 1 5.6349 8.4969 0.0241 32 1 2.6942 9.1377 -1.4346 33 1 2.7671 5.7960 -1.6397 34 1 6.1880 -0.0350 1.7083 35 1 4.0097 0.3705 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242867353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:26 Heat of formation + Delta-G solvation = 1.316136 kcal Electronic energy + Delta-G solvation = -19504.855388 eV Core-core repulsion = 16558.725143 eV Total energy + Delta-G solvation = -2946.130244 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.08295 -38.31166 -36.25208 -33.69916 -31.36273 -30.58857 -29.73759 -28.20360 -26.28595 -25.30869 -22.45885 -22.23234 -20.88643 -19.93799 -17.85360 -17.53201 -16.24629 -16.09151 -15.28599 -15.03255 -14.90751 -14.80605 -14.38096 -13.84036 -13.26459 -13.18188 -12.93844 -12.58920 -12.12441 -11.85960 -11.60091 -11.45293 -11.26372 -11.24401 -11.06391 -10.79355 -10.55459 -10.39977 -10.01311 -9.83981 -9.64477 -9.25794 -8.43267 -8.23031 -7.98875 -7.59062 -7.00689 -6.72133 -4.52805 1.40557 1.79751 2.03177 2.69398 2.89974 3.01690 3.04405 3.06119 3.14932 3.83935 4.24072 4.30714 4.50661 5.34744 5.42970 5.50221 5.60892 5.68745 5.77301 5.86454 5.97390 5.98390 6.02656 6.26121 6.31964 6.53407 6.71531 6.76267 6.90417 6.96397 7.07881 7.27948 7.32040 7.42460 7.60042 7.71162 7.87008 7.94627 8.26540 8.63530 8.71837 8.79669 10.03188 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.006623 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.715772 B = 4226.539532 C = 6213.263801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.135 3.865 4 C -0.316 4.316 5 C -0.039 4.039 6 C -0.210 4.210 7 C 0.019 3.981 8 C -0.071 4.071 9 C -0.133 4.133 10 C -0.100 4.100 11 C -0.111 4.111 12 S -0.147 6.147 13 C -0.085 4.085 14 C 0.158 3.842 15 C -0.448 4.448 16 H 0.086 0.914 17 C 0.077 3.923 18 N -0.779 5.779 19 Si 0.906 3.094 20 H -0.262 1.262 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.192 4.192 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.135 0.865 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.285 0.715 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 5.744 -0.756 6.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.091 3.909 4 C -0.336 4.336 5 C -0.057 4.057 6 C -0.211 4.211 7 C 0.017 3.983 8 C -0.089 4.089 9 C -0.153 4.153 10 C -0.120 4.120 11 C -0.222 4.222 12 S 0.010 5.990 13 C -0.106 4.106 14 C 0.155 3.845 15 C -0.477 4.477 16 H 0.104 0.896 17 C -0.143 4.143 18 N -0.403 5.403 19 Si 0.730 3.270 20 H -0.187 1.187 21 H -0.202 1.202 22 H -0.186 1.186 23 C -0.212 4.212 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.110 0.890 29 H 0.153 0.847 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.030 0.970 33 H 0.143 0.857 34 H 0.096 0.904 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.374 5.922 -1.361 6.524 hybrid contribution 0.002 -0.253 1.176 1.203 sum -2.372 5.669 -0.184 6.148 Atomic orbital electron populations 1.22769 0.80685 1.01941 1.00550 1.86007 1.19583 1.29063 1.89681 1.19012 0.92471 0.82505 0.96887 1.20365 0.97409 0.92451 1.23344 1.20322 0.93213 0.95295 0.96897 1.18488 0.92086 0.90896 1.19667 1.18818 0.94156 0.92654 0.92639 1.21709 0.94083 0.95565 0.97522 1.21059 1.00814 0.93894 0.99554 1.21341 0.96710 0.99322 0.94669 1.20920 1.03316 0.96494 1.01503 1.85790 1.48057 1.39343 1.25807 1.21703 0.99266 0.91897 0.97687 1.17194 0.92745 0.88822 0.85739 1.19549 0.90956 1.03942 1.33229 0.89576 1.25974 1.01412 0.94186 0.92739 1.69795 1.38762 1.11180 1.20526 0.86380 0.81646 0.78830 0.80159 1.18691 1.20197 1.18564 1.20529 0.89341 0.99106 1.12201 0.93640 0.93644 0.89855 0.88490 0.88961 0.84674 0.86185 0.86144 0.96956 0.85695 0.90411 0.85500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.57 9.80 101.05 0.99 1.56 16 2 O -0.33 -7.07 10.48 -19.34 -0.20 -7.27 16 3 C 0.14 3.18 6.67 -39.24 -0.26 2.92 16 4 C -0.32 -6.84 9.02 -39.23 -0.35 -7.19 16 5 C -0.04 -0.84 9.49 -39.34 -0.37 -1.21 16 6 C -0.21 -4.80 5.52 -104.22 -0.58 -5.37 16 7 C 0.02 0.40 4.92 -104.93 -0.52 -0.12 16 8 C -0.07 -1.36 7.99 -39.12 -0.31 -1.67 16 9 C -0.13 -2.18 10.02 -39.67 -0.40 -2.57 16 10 C -0.10 -1.57 9.79 -39.25 -0.38 -1.95 16 11 C -0.11 -1.86 6.11 -39.09 -0.24 -2.10 16 12 S -0.15 -2.15 25.77 -107.50 -2.77 -4.92 16 13 C -0.08 -1.57 9.26 -38.94 -0.36 -1.94 16 14 C 0.16 3.96 5.55 -106.59 -0.59 3.37 16 15 C -0.45 -10.98 7.09 -37.90 -0.27 -11.25 16 16 H 0.09 2.07 6.64 -52.48 -0.35 1.72 16 17 C 0.08 1.81 5.17 -17.32 -0.09 1.72 16 18 N -0.78 -19.10 10.99 55.55 0.61 -18.49 16 19 Si 0.91 17.83 29.59 -169.99 -5.03 12.80 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 23 C -0.19 -4.90 8.59 -38.79 -0.33 -5.23 16 24 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 25 H 0.04 0.66 7.65 -51.93 -0.40 0.27 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.10 1.84 6.25 -52.49 -0.33 1.51 16 28 H 0.09 1.77 8.04 -52.49 -0.42 1.35 16 29 H 0.14 2.75 7.30 -52.48 -0.38 2.36 16 30 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.07 0.89 9.07 97.61 0.89 1.77 16 33 H 0.13 2.24 8.04 -52.49 -0.42 1.82 16 34 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 35 H 0.13 3.41 6.26 -52.49 -0.33 3.08 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -26.08 312.58 -9.29 -35.37 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -2.54 Total: 8.84 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: -4.07 Total: -31.04 kcal Atomic # 7 Polarization: -19.10 SS G_CDS: 0.61 Total: -18.49 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.20 Total: -7.27 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Atomic # 16 Polarization: -2.15 SS G_CDS: -2.77 Total: -4.92 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.08 -9.29 -35.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242867353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.685 kcal (2) G-P(sol) polarization free energy of solvation -26.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds