Wall clock time and date at job start Tue Mar 31 2020 05:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35873 * 117.00303 * 2 1 4 4 C 1.39461 * 119.77706 * 0.02562 * 3 2 1 5 5 C 1.37957 * 120.61420 * 179.71403 * 4 3 2 6 6 C 1.39160 * 120.16622 * 0.52077 * 5 4 3 7 7 C 1.47849 * 120.22063 * 179.75923 * 6 5 4 8 8 C 1.39743 * 120.11036 * 129.71971 * 7 6 5 9 9 C 1.37964 * 120.00841 * 180.02562 * 8 7 6 10 10 C 1.38257 * 120.23409 * 0.28291 * 9 8 7 11 11 C 1.39107 * 120.22534 * 359.44018 * 10 9 8 12 12 S 1.76201 * 120.01010 * 180.28160 * 11 10 9 13 13 C 1.38694 * 119.99010 * 0.55674 * 11 10 9 14 14 C 1.41895 * 119.56160 * 359.48809 * 6 5 4 15 15 C 1.40889 * 120.30198 * 180.27816 * 14 6 5 16 16 H 1.08009 * 119.99924 * 332.97065 * 15 14 6 17 17 C 1.40042 * 120.00286 * 152.96951 * 15 14 6 18 18 N 1.30784 * 120.00255 * 344.44758 * 17 15 14 19 19 Si 1.86808 * 120.00170 * 164.44758 * 17 15 14 20 20 H 1.48501 * 109.46798 * 60.00013 * 19 17 15 21 21 H 1.48496 * 109.47201 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47110 * 300.00468 * 19 17 15 23 23 C 1.37931 * 119.78167 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47138 * 299.99450 * 1 2 3 25 25 H 1.09001 * 109.47492 * 59.99411 * 1 2 3 26 26 H 1.09004 * 109.47162 * 180.02562 * 1 2 3 27 27 H 1.08000 * 119.69694 * 359.97438 * 4 3 2 28 28 H 1.08002 * 119.91661 * 180.25172 * 5 4 3 29 29 H 1.08007 * 119.99948 * 0.04706 * 8 7 6 30 30 H 1.07997 * 119.88086 * 179.97438 * 9 8 7 31 31 H 1.08001 * 119.89061 * 179.70370 * 10 9 8 32 32 H 1.34506 * 102.99938 * 270.27870 * 12 11 10 33 33 H 1.07993 * 120.12299 * 179.69974 * 13 11 10 34 34 H 0.96994 * 120.00272 * 180.02562 * 18 17 15 35 35 H 1.07993 * 120.09473 * 0.04926 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 1.2818 2.3773 0.0005 5 6 1.8901 3.6155 0.0065 6 6 3.2783 3.7126 0.0011 7 6 3.9315 5.0390 0.0021 8 6 4.9381 5.3241 0.9286 9 6 5.5458 6.5626 0.9279 10 6 5.1588 7.5275 0.0166 11 6 4.1619 7.2523 -0.9138 12 16 3.6782 8.4838 -2.0775 13 6 3.5446 6.0103 -0.9216 14 6 4.0628 2.5302 0.0004 15 6 5.4694 2.6104 0.0009 16 1 5.9613 3.4733 -0.4234 17 6 6.2299 1.5713 0.5515 18 7 5.6613 0.6845 1.3266 19 14 8.0565 1.4518 0.1791 20 1 8.7391 2.6840 0.6491 21 1 8.6281 0.2727 0.8777 22 1 8.2545 1.3043 -1.2853 23 6 3.4235 1.2775 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 0.2038 2.3109 0.0005 28 1 1.2875 4.5117 0.0109 29 1 5.2406 4.5746 1.6450 30 1 6.3232 6.7809 1.6452 31 1 5.6349 8.4969 0.0241 32 1 2.6942 9.1377 -1.4346 33 1 2.7671 5.7960 -1.6397 34 1 6.1880 -0.0350 1.7083 35 1 4.0097 0.3705 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242867353.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:25 Heat of formation + Delta-G solvation = -10.443236 kcal Electronic energy + Delta-G solvation = -19505.365312 eV Core-core repulsion = 16558.725143 eV Total energy + Delta-G solvation = -2946.640169 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69760 -39.79649 -37.88624 -35.45746 -32.88174 -32.04777 -31.42355 -29.74617 -27.76641 -27.02860 -23.97135 -23.67626 -22.57571 -21.51661 -19.55861 -18.82203 -17.96851 -17.44721 -16.91867 -16.48105 -16.44457 -16.35545 -15.79296 -15.29936 -14.85875 -14.60310 -14.47235 -14.21962 -13.57214 -13.49582 -13.13518 -12.95818 -12.83990 -12.74823 -12.43946 -12.41446 -12.04584 -11.87482 -11.53765 -11.41300 -11.34364 -10.99868 -9.80417 -9.67132 -9.40033 -9.13004 -8.76072 -8.43941 -6.36511 0.08840 0.36772 0.75992 0.96899 1.20484 1.39004 1.49225 1.53707 1.89067 2.19341 2.67961 2.77099 2.91461 3.68237 4.05420 4.11522 4.27587 4.37554 4.45616 4.48730 4.51717 4.59014 4.63608 4.73384 4.90547 5.02786 5.11808 5.15312 5.30031 5.38438 5.52005 5.55299 5.77619 5.85947 5.89942 6.04321 6.14594 6.17615 6.47659 6.87698 6.91314 7.02511 8.29851 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.011768 B = 0.006623 C = 0.004505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.715772 B = 4226.539532 C = 6213.263801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.351 6.351 3 C 0.130 3.870 4 C -0.315 4.315 5 C -0.045 4.045 6 C -0.215 4.215 7 C -0.007 4.007 8 C -0.086 4.086 9 C -0.126 4.126 10 C -0.088 4.088 11 C -0.118 4.118 12 S -0.131 6.131 13 C -0.089 4.089 14 C 0.131 3.869 15 C -0.468 4.468 16 H 0.083 0.917 17 C 0.040 3.960 18 N -0.814 5.814 19 Si 0.971 3.029 20 H -0.253 1.253 21 H -0.269 1.269 22 H -0.263 1.263 23 C -0.228 4.228 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.116 0.884 27 H 0.127 0.873 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.289 0.711 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.553 7.997 -1.107 8.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.266 6.266 3 C 0.085 3.915 4 C -0.334 4.334 5 C -0.063 4.063 6 C -0.216 4.216 7 C -0.009 4.009 8 C -0.104 4.104 9 C -0.145 4.145 10 C -0.108 4.108 11 C -0.230 4.230 12 S 0.026 5.974 13 C -0.110 4.110 14 C 0.129 3.871 15 C -0.497 4.497 16 H 0.101 0.899 17 C -0.177 4.177 18 N -0.439 5.439 19 Si 0.791 3.209 20 H -0.177 1.177 21 H -0.193 1.193 22 H -0.188 1.188 23 C -0.248 4.248 24 H 0.072 0.928 25 H 0.076 0.924 26 H 0.134 0.866 27 H 0.145 0.855 28 H 0.136 0.864 29 H 0.131 0.869 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.045 0.955 33 H 0.144 0.856 34 H 0.100 0.900 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.538 8.177 -1.709 8.730 hybrid contribution -0.119 -0.853 1.263 1.529 sum -2.658 7.323 -0.446 7.803 Atomic orbital electron populations 1.23150 0.77569 1.04562 1.01519 1.85970 1.22833 1.28369 1.89452 1.19120 0.92191 0.83900 0.96252 1.20680 0.98828 0.91752 1.22156 1.20668 0.93120 0.96346 0.96196 1.18827 0.92829 0.91604 1.18381 1.18790 0.95492 0.92229 0.94425 1.21615 0.94710 0.96609 0.97493 1.21343 1.00664 0.92542 0.99996 1.21743 0.95589 1.00314 0.93196 1.21145 1.03212 0.96566 1.02036 1.85749 1.48550 1.38085 1.25060 1.21704 0.99601 0.92340 0.97365 1.17532 0.93596 0.89563 0.86458 1.19638 0.91205 1.04564 1.34277 0.89919 1.26730 1.05428 0.93473 0.92044 1.69871 1.40425 1.11968 1.21646 0.85409 0.76546 0.79283 0.79629 1.17681 1.19340 1.18787 1.20476 0.90546 0.98572 1.15211 0.92769 0.92381 0.86601 0.85515 0.86374 0.86904 0.83207 0.82822 0.95456 0.85612 0.90033 0.88071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 9.80 113.37 1.11 1.90 16 2 O -0.35 -15.29 10.48 -92.12 -0.97 -16.26 16 3 C 0.13 6.27 6.67 22.49 0.15 6.42 16 4 C -0.31 -13.52 9.02 22.50 0.20 -13.31 16 5 C -0.05 -1.94 9.49 22.42 0.21 -1.73 16 6 C -0.21 -10.10 5.52 -19.61 -0.11 -10.21 16 7 C -0.01 -0.31 4.92 -20.06 -0.10 -0.41 16 8 C -0.09 -3.33 7.99 22.57 0.18 -3.15 16 9 C -0.13 -3.84 10.02 22.21 0.22 -3.62 16 10 C -0.09 -2.48 9.79 22.48 0.22 -2.26 16 11 C -0.12 -3.68 6.11 22.59 0.14 -3.54 16 12 S -0.13 -3.43 25.77 -56.49 -1.46 -4.89 16 13 C -0.09 -3.23 9.26 22.69 0.21 -3.02 16 14 C 0.13 6.92 5.55 -21.14 -0.12 6.80 16 15 C -0.47 -24.07 7.09 23.36 0.17 -23.90 16 16 H 0.08 4.15 6.64 -2.91 -0.02 4.13 16 17 C 0.04 1.96 5.17 85.29 0.44 2.40 16 18 N -0.81 -42.10 10.99 21.84 0.24 -41.86 16 19 Si 0.97 37.42 29.59 68.60 2.03 39.45 16 20 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 21 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 23 C -0.23 -12.32 8.59 22.79 0.20 -12.12 16 24 H 0.05 1.52 7.65 -2.39 -0.02 1.50 16 25 H 0.06 1.58 7.65 -2.39 -0.02 1.56 16 26 H 0.12 2.66 8.14 -2.39 -0.02 2.64 16 27 H 0.13 4.56 6.25 -2.91 -0.02 4.55 16 28 H 0.12 4.37 8.04 -2.91 -0.02 4.35 16 29 H 0.11 4.80 7.30 -2.91 -0.02 4.78 16 30 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 31 H 0.15 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.08 1.88 9.07 73.35 0.67 2.55 16 33 H 0.13 4.41 8.04 -2.91 -0.02 4.39 16 34 H 0.29 13.64 8.29 -92.71 -0.77 12.87 16 35 H 0.10 5.86 6.26 -2.91 -0.02 5.84 16 Total: -1.00 -59.20 312.58 4.76 -54.44 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 1.79 Total: 28.87 kcal Atomic # 6 Polarization: -62.88 SS G_CDS: 3.13 Total: -59.75 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.24 Total: -41.86 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.97 Total: -16.26 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -1.46 Total: -4.89 kcal Total: -59.20 4.76 -54.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242867353.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.995 kcal (2) G-P(sol) polarization free energy of solvation -59.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds