Wall clock time and date at job start Tue Mar 31 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76202 * 102.99925 * 2 1 4 4 C 1.38829 * 120.14761 * 359.97438 * 3 2 1 5 5 C 1.38118 * 120.04214 * 180.02562 * 4 3 2 6 6 C 1.38441 * 120.34009 * 359.97438 * 5 4 3 7 7 C 1.38016 * 120.29978 * 359.71920 * 6 5 4 8 8 C 1.39319 * 119.94653 * 0.55943 * 7 6 5 9 9 C 1.48182 * 120.16763 * 179.72334 * 8 7 6 10 10 C 1.39335 * 120.16903 * 64.71913 * 9 8 7 11 11 C 1.38001 * 119.94187 * 179.97438 * 10 9 8 12 12 C 1.38457 * 120.27221 * 0.02562 * 11 10 9 13 13 C 1.38125 * 120.33459 * 359.97438 * 12 11 10 14 14 C 1.38734 * 120.05576 * 0.02562 * 13 12 11 15 15 O 1.35674 * 120.13628 * 180.02562 * 14 13 12 16 16 C 1.34811 * 116.99807 * 354.39353 * 15 14 13 17 17 H 1.07996 * 119.99821 * 5.06862 * 16 15 14 18 18 C 1.38637 * 119.99373 * 185.06434 * 16 15 14 19 19 N 1.31558 * 120.00284 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99421 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47278 * 90.00374 * 20 18 16 22 22 H 1.48499 * 109.47171 * 210.00071 * 20 18 16 23 23 H 1.48501 * 109.47584 * 330.00167 * 20 18 16 24 24 H 1.08991 * 109.47299 * 59.99685 * 1 2 3 25 25 H 1.09002 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46908 * 300.00067 * 1 2 3 27 27 H 1.07996 * 119.98279 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.82658 * 179.97438 * 5 4 3 29 29 H 1.08007 * 119.85143 * 179.97438 * 6 5 4 30 30 H 1.07997 * 120.02532 * 180.27517 * 7 6 5 31 31 H 1.07997 * 120.02373 * 359.96231 * 10 9 8 32 32 H 1.07996 * 119.86324 * 180.02562 * 11 10 9 33 33 H 1.08003 * 119.82644 * 179.71308 * 12 11 10 34 34 H 1.08003 * 119.96773 * 180.02562 * 13 12 11 35 35 H 0.97006 * 120.00147 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1975 2.6663 -0.0005 5 6 1.5106 4.0115 -0.0011 6 6 2.8329 4.4217 -0.0005 7 6 3.8510 3.4899 0.0064 8 6 3.5491 2.1298 0.0011 9 6 4.6384 1.1252 0.0022 10 6 5.4977 1.0253 1.0946 11 6 6.5102 0.0877 1.0909 12 6 6.6770 -0.7552 0.0053 13 6 5.8318 -0.6660 -1.0835 14 6 4.8093 0.2716 -1.0944 15 8 3.9777 0.3602 -2.1628 16 6 4.2682 -0.4105 -3.2300 17 1 5.0811 -1.1196 -3.1787 18 6 3.5233 -0.2927 -4.3933 19 7 2.5333 0.5714 -4.4559 20 14 3.9254 -1.3612 -5.8719 21 1 3.1473 -2.6238 -5.7965 22 1 3.5713 -0.6354 -7.1181 23 1 5.3771 -1.6739 -5.8766 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.1640 2.3529 -0.0014 28 1 0.7199 4.7471 -0.0019 29 1 3.0688 5.4757 -0.0014 30 1 4.8809 3.8148 0.0112 31 1 5.3714 1.6813 1.9431 32 1 7.1752 0.0111 1.9384 33 1 7.4747 -1.4833 0.0081 34 1 5.9670 -1.3268 -1.9271 35 1 2.0124 0.6541 -5.2700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242946121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:03 Heat of formation + Delta-G solvation = 27.170530 kcal Electronic energy + Delta-G solvation = -19953.361051 eV Core-core repulsion = 17008.351937 eV Total energy + Delta-G solvation = -2945.009114 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.31134 -38.00848 -36.21885 -32.35218 -31.94607 -30.76926 -29.10408 -28.38159 -27.99953 -25.28965 -22.85163 -22.28105 -21.24057 -20.37888 -17.88424 -17.41487 -16.62839 -15.65221 -14.86487 -14.68626 -14.48177 -14.30001 -13.86832 -13.62247 -13.50412 -13.39434 -13.21844 -12.69738 -12.52983 -12.11673 -12.05555 -11.64821 -11.38486 -11.28184 -10.88412 -10.74619 -10.65970 -10.50342 -10.41454 -9.57613 -9.25800 -9.12320 -8.78713 -8.47914 -7.92439 -7.12835 -6.60071 -6.38702 -3.95319 1.69265 1.82906 2.13812 2.31187 2.46154 3.08971 3.15165 3.16108 3.19979 3.99982 4.21513 4.60648 5.14640 5.26208 5.31719 5.35282 5.39301 5.44909 5.46551 5.70499 5.77460 5.88958 5.89834 6.03134 6.10894 6.24892 6.36815 6.47069 6.66166 6.75247 6.88492 6.93545 7.01491 7.15088 7.23687 7.40626 7.42023 7.49853 7.85788 8.03919 9.05963 9.77411 10.77670 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.007906 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.170308 B = 3540.854191 C = 4500.038598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 S -0.067 6.067 3 C -0.057 4.057 4 C -0.137 4.137 5 C -0.111 4.111 6 C -0.134 4.134 7 C -0.096 4.096 8 C 0.010 3.990 9 C -0.144 4.144 10 C -0.054 4.054 11 C -0.220 4.220 12 C -0.067 4.067 13 C -0.237 4.237 14 C 0.174 3.826 15 O -0.149 6.149 16 C -0.389 4.389 17 H 0.090 0.910 18 C 0.044 3.956 19 N -0.852 5.852 20 Si 0.934 3.066 21 H -0.274 1.274 22 H -0.279 1.279 23 H -0.268 1.268 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.128 0.872 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.958 2.220 8.478 8.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 S 0.178 5.822 3 C -0.170 4.170 4 C -0.162 4.162 5 C -0.131 4.131 6 C -0.154 4.154 7 C -0.115 4.115 8 C 0.004 3.996 9 C -0.146 4.146 10 C -0.072 4.072 11 C -0.239 4.239 12 C -0.086 4.086 13 C -0.256 4.256 14 C 0.118 3.882 15 O -0.051 6.051 16 C -0.466 4.466 17 H 0.107 0.893 18 C -0.161 4.161 19 N -0.486 5.486 20 Si 0.759 3.241 21 H -0.200 1.200 22 H -0.204 1.204 23 H -0.193 1.193 24 H 0.100 0.900 25 H 0.118 0.882 26 H 0.092 0.908 27 H 0.135 0.865 28 H 0.134 0.866 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.145 0.855 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.752 1.318 8.233 8.371 hybrid contribution -0.628 0.531 -0.956 1.261 sum -1.380 1.849 7.277 7.634 Atomic orbital electron populations 1.23697 0.98089 1.06252 1.04773 1.85875 1.02642 1.02776 1.90876 1.21830 0.95701 0.96788 1.02728 1.20957 0.97704 0.93228 1.04279 1.20864 0.96331 0.94972 1.00948 1.20917 0.92791 0.98900 1.02838 1.21107 0.99039 0.91677 0.99718 1.18145 0.90281 0.92569 0.98644 1.17733 1.00343 1.00599 0.95884 1.20641 0.93600 0.97242 0.95721 1.20466 1.02139 1.01448 0.99820 1.20802 0.97338 0.97292 0.93149 1.21096 0.99810 1.03767 1.00955 1.19279 0.88819 0.91685 0.88400 1.84059 1.43201 1.57712 1.20092 1.21306 1.17688 1.18092 0.89499 0.89310 1.25191 0.95620 0.97304 0.97941 1.70068 1.17881 1.32851 1.27836 0.85817 0.79015 0.79254 0.79982 1.19958 1.20389 1.19262 0.89956 0.88155 0.90785 0.86550 0.86631 0.86518 0.86072 0.87104 0.87595 0.87589 0.85467 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.15 101.05 0.92 -1.53 16 2 S -0.07 -1.38 19.99 -107.50 -2.15 -3.52 16 3 C -0.06 -1.18 5.90 -38.67 -0.23 -1.41 16 4 C -0.14 -2.48 9.36 -39.41 -0.37 -2.85 16 5 C -0.11 -1.81 10.03 -39.55 -0.40 -2.20 16 6 C -0.13 -2.17 10.03 -39.59 -0.40 -2.57 16 7 C -0.10 -1.76 9.73 -39.26 -0.38 -2.15 16 8 C 0.01 0.20 4.96 -104.71 -0.52 -0.32 16 9 C -0.14 -3.13 4.62 -104.74 -0.48 -3.61 16 10 C -0.05 -1.01 9.73 -39.26 -0.38 -1.39 16 11 C -0.22 -3.91 10.03 -39.59 -0.40 -4.31 16 12 C -0.07 -1.27 10.03 -39.54 -0.40 -1.66 16 13 C -0.24 -5.24 9.16 -39.44 -0.36 -5.60 16 14 C 0.17 4.23 5.83 -38.73 -0.23 4.00 16 15 O -0.15 -4.14 8.08 0.34 0.00 -4.13 16 16 C -0.39 -10.74 9.49 30.88 0.29 -10.45 16 17 H 0.09 2.30 5.21 -52.49 -0.27 2.02 16 18 C 0.04 1.21 5.49 -17.52 -0.10 1.11 16 19 N -0.85 -24.60 13.67 55.48 0.76 -23.85 16 20 Si 0.93 20.54 29.55 -169.99 -5.02 15.52 16 21 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 24 H 0.08 1.31 7.75 -51.93 -0.40 0.90 16 25 H 0.10 1.35 8.14 -51.92 -0.42 0.93 16 26 H 0.07 0.96 7.75 -51.92 -0.40 0.56 16 27 H 0.12 1.85 5.88 -52.49 -0.31 1.54 16 28 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 30 H 0.12 2.02 8.06 -52.49 -0.42 1.59 16 31 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.11 1.67 8.06 -52.48 -0.42 1.24 16 34 H 0.13 2.80 5.64 -52.48 -0.30 2.50 16 35 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 313.18 15.07 4.72 4.72 Total: -1.00 -30.91 313.18 -8.89 -39.80 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -3.78 Total: 6.40 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: -3.42 Total: -34.94 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.76 Total: -23.85 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: 0.00 Total: -4.13 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.15 Total: -3.52 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.91 -8.89 -39.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242946121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.967 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds