Wall clock time and date at job start Tue Mar 31 2020 05:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76202 * 102.99925 * 2 1 4 4 C 1.38829 * 120.14761 * 359.97438 * 3 2 1 5 5 C 1.38118 * 120.04214 * 180.02562 * 4 3 2 6 6 C 1.38441 * 120.34009 * 359.97438 * 5 4 3 7 7 C 1.38016 * 120.29978 * 359.71920 * 6 5 4 8 8 C 1.39319 * 119.94653 * 0.55943 * 7 6 5 9 9 C 1.48182 * 120.16763 * 179.72334 * 8 7 6 10 10 C 1.39335 * 120.16903 * 64.71913 * 9 8 7 11 11 C 1.38001 * 119.94187 * 179.97438 * 10 9 8 12 12 C 1.38457 * 120.27221 * 0.02562 * 11 10 9 13 13 C 1.38125 * 120.33459 * 359.97438 * 12 11 10 14 14 C 1.38734 * 120.05576 * 0.02562 * 13 12 11 15 15 O 1.35674 * 120.13628 * 180.02562 * 14 13 12 16 16 C 1.34811 * 116.99807 * 354.39353 * 15 14 13 17 17 H 1.07996 * 119.99821 * 5.06862 * 16 15 14 18 18 C 1.38637 * 119.99373 * 185.06434 * 16 15 14 19 19 N 1.31558 * 120.00284 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99421 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47278 * 90.00374 * 20 18 16 22 22 H 1.48499 * 109.47171 * 210.00071 * 20 18 16 23 23 H 1.48501 * 109.47584 * 330.00167 * 20 18 16 24 24 H 1.08991 * 109.47299 * 59.99685 * 1 2 3 25 25 H 1.09002 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46908 * 300.00067 * 1 2 3 27 27 H 1.07996 * 119.98279 * 359.97438 * 4 3 2 28 28 H 1.07997 * 119.82658 * 179.97438 * 5 4 3 29 29 H 1.08007 * 119.85143 * 179.97438 * 6 5 4 30 30 H 1.07997 * 120.02532 * 180.27517 * 7 6 5 31 31 H 1.07997 * 120.02373 * 359.96231 * 10 9 8 32 32 H 1.07996 * 119.86324 * 180.02562 * 11 10 9 33 33 H 1.08003 * 119.82644 * 179.71308 * 12 11 10 34 34 H 1.08003 * 119.96773 * 180.02562 * 13 12 11 35 35 H 0.97006 * 120.00147 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1975 2.6663 -0.0005 5 6 1.5106 4.0115 -0.0011 6 6 2.8329 4.4217 -0.0005 7 6 3.8510 3.4899 0.0064 8 6 3.5491 2.1298 0.0011 9 6 4.6384 1.1252 0.0022 10 6 5.4977 1.0253 1.0946 11 6 6.5102 0.0877 1.0909 12 6 6.6770 -0.7552 0.0053 13 6 5.8318 -0.6660 -1.0835 14 6 4.8093 0.2716 -1.0944 15 8 3.9777 0.3602 -2.1628 16 6 4.2682 -0.4105 -3.2300 17 1 5.0811 -1.1196 -3.1787 18 6 3.5233 -0.2927 -4.3933 19 7 2.5333 0.5714 -4.4559 20 14 3.9254 -1.3612 -5.8719 21 1 3.1473 -2.6238 -5.7965 22 1 3.5713 -0.6354 -7.1181 23 1 5.3771 -1.6739 -5.8766 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 0.1640 2.3529 -0.0014 28 1 0.7199 4.7471 -0.0019 29 1 3.0688 5.4757 -0.0014 30 1 4.8809 3.8148 0.0112 31 1 5.3714 1.6813 1.9431 32 1 7.1752 0.0111 1.9384 33 1 7.4747 -1.4833 0.0081 34 1 5.9670 -1.3268 -1.9271 35 1 2.0124 0.6541 -5.2700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242946121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:03 Heat of formation + Delta-G solvation = 11.003275 kcal Electronic energy + Delta-G solvation = -19954.062116 eV Core-core repulsion = 17008.351937 eV Total energy + Delta-G solvation = -2945.710178 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.91904 -39.49772 -37.90146 -34.22977 -33.50057 -32.12785 -30.70070 -29.67343 -29.52950 -27.23843 -24.32816 -23.70974 -22.87506 -21.88390 -19.70753 -19.00408 -18.20488 -17.15012 -16.44818 -16.29729 -16.11621 -15.85145 -15.36005 -15.19081 -15.00825 -14.83354 -14.62741 -14.33503 -14.05107 -13.57239 -13.44225 -13.31671 -12.97637 -12.77239 -12.50715 -12.30917 -12.15053 -12.12776 -11.94613 -11.18917 -10.90905 -10.72835 -10.50455 -9.94444 -9.44983 -8.82814 -8.37101 -8.12044 -6.00925 0.23620 0.43467 0.67603 0.82679 0.86596 1.35163 1.43692 1.50328 1.70436 2.20429 2.80560 2.92925 3.25791 3.58923 3.87508 4.00745 4.19479 4.22692 4.24263 4.26276 4.31383 4.51281 4.56944 4.64152 4.73911 4.78536 4.90370 5.08212 5.13483 5.20093 5.24385 5.45666 5.53163 5.61237 5.72729 5.76227 5.81641 6.07034 6.12967 6.28705 7.07173 7.91239 8.83932 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.007906 C = 0.006221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.170308 B = 3540.854191 C = 4500.038598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.146 6.146 3 C -0.075 4.075 4 C -0.150 4.150 5 C -0.108 4.108 6 C -0.129 4.129 7 C -0.108 4.108 8 C -0.027 4.027 9 C -0.146 4.146 10 C -0.059 4.059 11 C -0.197 4.197 12 C -0.068 4.068 13 C -0.257 4.257 14 C 0.141 3.859 15 O -0.190 6.190 16 C -0.409 4.409 17 H 0.092 0.908 18 C -0.012 4.012 19 N -0.905 5.905 20 Si 1.005 2.995 21 H -0.267 1.267 22 H -0.273 1.273 23 H -0.257 1.257 24 H 0.074 0.926 25 H 0.118 0.882 26 H 0.100 0.900 27 H 0.134 0.866 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.117 0.883 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 3.015 10.076 10.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.099 5.901 3 C -0.188 4.188 4 C -0.174 4.174 5 C -0.127 4.127 6 C -0.149 4.149 7 C -0.128 4.128 8 C -0.033 4.033 9 C -0.148 4.148 10 C -0.077 4.077 11 C -0.216 4.216 12 C -0.086 4.086 13 C -0.276 4.276 14 C 0.089 3.911 15 O -0.094 6.094 16 C -0.485 4.485 17 H 0.110 0.890 18 C -0.210 4.210 19 N -0.543 5.543 20 Si 0.825 3.175 21 H -0.192 1.192 22 H -0.198 1.198 23 H -0.181 1.181 24 H 0.093 0.907 25 H 0.136 0.864 26 H 0.119 0.881 27 H 0.151 0.849 28 H 0.172 0.828 29 H 0.173 0.827 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.134 0.866 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.024 2.113 9.881 10.105 hybrid contribution -0.747 0.376 -1.142 1.416 sum -0.771 2.489 8.739 9.119 Atomic orbital electron populations 1.23695 0.93592 1.07729 1.05629 1.85957 1.07805 1.04945 1.91420 1.21949 0.96411 0.96426 1.04041 1.21325 0.98116 0.93890 1.04040 1.21363 0.97560 0.94880 0.98946 1.21381 0.92304 1.00422 1.00830 1.21377 1.00482 0.91114 0.99831 1.18437 0.90497 0.93652 1.00680 1.18125 1.00812 1.00169 0.95702 1.21071 0.93165 0.97897 0.95594 1.21021 1.01244 0.99116 1.00199 1.21199 0.97279 0.98013 0.92120 1.21254 1.00535 1.03667 1.02147 1.19799 0.89584 0.93153 0.88613 1.84048 1.45204 1.59122 1.21033 1.21699 1.18005 1.18473 0.90344 0.89019 1.26274 0.95376 0.98719 1.00663 1.70211 1.19782 1.35559 1.28708 0.84782 0.79287 0.77425 0.75970 1.19175 1.19836 1.18092 0.90708 0.86395 0.88075 0.84854 0.82780 0.82721 0.84907 0.84321 0.83272 0.84019 0.86559 0.92381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.24 9.15 113.37 1.04 -3.20 16 2 S -0.15 -6.21 19.99 -56.49 -1.13 -7.34 16 3 C -0.08 -3.18 5.90 22.86 0.13 -3.04 16 4 C -0.15 -5.31 9.36 22.38 0.21 -5.10 16 5 C -0.11 -3.25 10.03 22.29 0.22 -3.02 16 6 C -0.13 -3.89 10.03 22.27 0.22 -3.66 16 7 C -0.11 -3.92 9.73 22.48 0.22 -3.70 16 8 C -0.03 -1.15 4.96 -19.92 -0.10 -1.25 16 9 C -0.15 -6.45 4.62 -19.94 -0.09 -6.55 16 10 C -0.06 -2.13 9.73 22.48 0.22 -1.91 16 11 C -0.20 -6.40 10.03 22.27 0.22 -6.18 16 12 C -0.07 -2.43 10.03 22.30 0.22 -2.21 16 13 C -0.26 -11.59 9.16 22.36 0.20 -11.39 16 14 C 0.14 7.13 5.83 22.82 0.13 7.26 16 15 O -0.19 -11.14 8.08 -21.71 -0.18 -11.32 16 16 C -0.41 -23.78 9.49 67.92 0.64 -23.14 16 17 H 0.09 5.02 5.21 -2.91 -0.02 5.00 16 18 C -0.01 -0.66 5.49 84.83 0.47 -0.19 16 19 N -0.91 -54.97 13.67 21.61 0.30 -54.68 16 20 Si 1.00 43.58 29.55 68.60 2.03 45.61 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 23 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 24 H 0.07 2.40 7.75 -2.40 -0.02 2.38 16 25 H 0.12 3.13 8.14 -2.39 -0.02 3.12 16 26 H 0.10 2.50 7.75 -2.39 -0.02 2.48 16 27 H 0.13 4.09 5.88 -2.91 -0.02 4.08 16 28 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 29 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 30 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 31 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 32 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 33 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 34 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 35 H 0.27 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -72.65 313.18 6.09 -66.56 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 1.10 Total: 28.44 kcal Atomic # 6 Polarization: -71.25 SS G_CDS: 3.97 Total: -67.28 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.30 Total: -54.68 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.18 Total: -11.32 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: -6.21 SS G_CDS: -1.13 Total: -7.34 kcal Total: -72.65 6.09 -66.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242946121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.564 kcal (2) G-P(sol) polarization free energy of solvation -72.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds