Wall clock time and date at job start Tue Mar 31 2020 06:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34675 * 117.00002 * 2 1 4 4 O 1.21416 * 119.99779 * 0.02562 * 3 2 1 5 5 C 1.48267 * 120.00120 * 180.02562 * 3 2 1 6 6 N 1.32636 * 119.01482 * 179.97438 * 5 3 2 7 7 C 1.31843 * 120.92146 * 180.02562 * 6 5 3 8 8 C 1.40266 * 118.97946 * 0.02562 * 7 6 5 9 9 C 1.47802 * 120.88570 * 179.97438 * 8 7 6 10 10 C 1.40496 * 120.79657 * 179.97438 * 9 8 7 11 11 N 1.31574 * 119.08585 * 180.02562 * 10 9 8 12 12 C 1.33647 * 120.83514 * 0.02562 * 11 10 9 13 13 C 1.41099 * 119.12789 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99505 * 6.28023 * 13 12 11 15 15 C 1.40203 * 120.00492 * 186.27598 * 13 12 11 16 16 N 1.30626 * 120.00042 * 353.59648 * 15 13 12 17 17 Si 1.86801 * 120.00120 * 173.32155 * 15 13 12 18 18 H 1.48496 * 109.47378 * 94.98555 * 17 15 13 19 19 H 1.48498 * 109.46983 * 214.98939 * 17 15 13 20 20 H 1.48502 * 109.46833 * 334.98288 * 17 15 13 21 21 N 1.33654 * 121.75164 * 0.25653 * 12 11 10 22 22 C 1.31568 * 120.83736 * 359.47691 * 21 12 11 23 23 C 1.40262 * 118.22565 * 0.26543 * 8 7 6 24 24 N 1.31848 * 118.97912 * 359.44862 * 23 8 7 25 25 H 1.08995 * 109.47572 * 60.00037 * 1 2 3 26 26 H 1.09000 * 109.47223 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47116 * 299.99849 * 1 2 3 28 28 H 1.08002 * 120.50631 * 179.97438 * 7 6 5 29 29 H 1.07998 * 120.46112 * 359.97438 * 10 9 8 30 30 H 0.96997 * 120.00135 * 180.02562 * 16 15 13 31 31 H 1.08001 * 120.45736 * 180.25908 * 22 21 12 32 32 H 1.07999 * 120.50922 * 179.71111 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2182 0.0005 5 6 3.5440 1.2776 -0.0006 6 7 4.1258 2.4696 -0.0011 7 6 5.4394 2.5824 -0.0021 8 6 6.2214 1.4180 -0.0032 9 6 7.6974 1.4954 -0.0049 10 6 8.4790 0.3278 -0.0055 11 7 9.7902 0.4359 -0.0066 12 6 10.3787 1.6359 -0.0066 13 6 11.7877 1.7099 -0.0072 14 1 12.3756 0.8097 -0.1099 15 6 12.4247 2.9518 0.1256 16 7 11.7192 4.0511 0.1239 17 14 14.2815 3.0340 0.3124 18 1 14.9036 3.2555 -1.0177 19 1 14.6387 4.1547 1.2187 20 1 14.7784 1.7570 0.8848 21 7 9.6680 2.7678 -0.0004 22 6 8.3526 2.7382 -0.0044 23 6 5.5654 0.1782 -0.0089 24 7 4.2472 0.1531 -0.0019 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 5.9060 3.5564 -0.0029 29 1 8.0099 -0.6450 -0.0043 30 1 12.1598 4.9104 0.2154 31 1 7.7844 3.6567 -0.0037 32 1 6.1313 -0.7416 -0.0146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243011000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:37 Heat of formation + Delta-G solvation = 14.392585 kcal Electronic energy + Delta-G solvation = -20573.880326 eV Core-core repulsion = 17114.316656 eV Total energy + Delta-G solvation = -3459.563670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.95923 -39.88016 -39.06319 -36.39807 -34.55393 -33.58008 -33.07057 -32.18882 -29.90095 -28.15379 -26.77593 -24.83541 -24.52134 -22.53931 -22.11372 -21.10221 -18.55548 -18.30696 -17.51392 -16.74650 -16.44603 -16.11713 -15.68512 -15.13210 -14.92770 -14.56945 -14.54514 -13.54041 -13.52850 -13.40553 -13.03432 -12.98374 -12.28044 -12.18305 -11.69016 -11.60707 -11.45757 -11.16658 -10.81852 -10.66383 -10.65821 -10.55333 -10.29762 -9.69264 -9.54220 -9.47031 -9.06947 -7.86413 -7.72958 -7.04094 -5.16073 0.43540 1.37734 2.04734 2.41869 2.60804 2.67984 2.80028 2.85092 2.92058 3.53101 4.04355 4.18758 4.30336 4.55366 4.80387 5.01321 5.08576 5.08688 5.24110 5.36296 5.42163 5.48647 5.53122 5.54490 5.87744 6.04166 6.22469 6.46604 6.55108 6.58873 6.87088 7.06877 7.26436 7.66222 7.67415 7.96669 8.06143 8.24987 8.64220 9.59567 9.79742 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.058183 B = 0.002972 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.128284 B = 9420.462683 C = 9881.197431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.337 6.337 3 C 0.545 3.455 4 O -0.486 6.486 5 C 0.212 3.788 6 N -0.445 5.445 7 C 0.100 3.900 8 C -0.014 4.014 9 C -0.341 4.341 10 C 0.204 3.796 11 N -0.585 5.585 12 C 0.367 3.633 13 C -0.342 4.342 14 H 0.104 0.896 15 C 0.052 3.948 16 N -0.678 5.678 17 Si 0.928 3.072 18 H -0.263 1.263 19 H -0.269 1.269 20 H -0.254 1.254 21 N -0.505 5.505 22 C 0.195 3.805 23 C 0.096 3.904 24 N -0.451 5.451 25 H 0.063 0.937 26 H 0.103 0.897 27 H 0.063 0.937 28 H 0.174 0.826 29 H 0.138 0.862 30 H 0.286 0.714 31 H 0.137 0.863 32 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.924 -3.626 0.097 8.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.252 6.252 3 C 0.386 3.614 4 O -0.370 6.370 5 C -0.052 4.052 6 N -0.160 5.160 7 C -0.070 4.070 8 C -0.021 4.021 9 C -0.353 4.353 10 C 0.026 3.974 11 N -0.303 5.303 12 C 0.138 3.862 13 C -0.373 4.373 14 H 0.122 0.878 15 C -0.179 4.179 16 N -0.296 5.296 17 Si 0.750 3.250 18 H -0.188 1.188 19 H -0.194 1.194 20 H -0.177 1.177 21 N -0.220 5.220 22 C 0.015 3.985 23 C -0.074 4.074 24 N -0.166 5.166 25 H 0.081 0.919 26 H 0.121 0.879 27 H 0.081 0.919 28 H 0.191 0.809 29 H 0.155 0.845 30 H 0.098 0.902 31 H 0.154 0.846 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -7.970 -3.037 0.124 8.529 hybrid contribution 0.423 0.210 0.087 0.481 sum -7.546 -2.826 0.211 8.061 Atomic orbital electron populations 1.23311 0.76196 1.03774 1.02544 1.86652 1.22952 1.31626 1.83954 1.20004 0.86599 0.81609 0.73212 1.90830 1.65502 1.36120 1.44582 1.20709 0.91894 0.85433 1.07119 1.67796 1.12736 1.26633 1.08857 1.23230 0.87243 0.99231 0.97255 1.20735 0.95221 0.94792 0.91337 1.19440 0.90083 0.97286 1.28459 1.22736 0.90053 0.96243 0.88414 1.68684 1.10329 1.28635 1.22624 1.19978 0.94695 0.82316 0.89182 1.19814 0.89188 0.94730 1.33577 0.87842 1.26382 1.02480 0.95008 0.94046 1.70068 1.38165 0.99051 1.22363 0.85947 0.79500 0.79951 0.79648 1.18752 1.19389 1.17740 1.69357 1.04607 1.30172 1.17899 1.23089 0.91968 0.94935 0.88489 1.23227 0.88898 0.97925 0.97357 1.68084 1.08676 1.31021 1.08848 0.91850 0.87856 0.91860 0.80914 0.84508 0.90230 0.84619 0.81125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 16 2 O -0.34 -4.85 10.35 -40.43 -0.42 -5.27 16 3 C 0.55 9.26 7.98 34.85 0.28 9.54 16 4 O -0.49 -8.97 16.64 -19.20 -0.32 -9.29 16 5 C 0.21 3.81 7.59 -156.90 -1.19 2.62 16 6 N -0.45 -8.11 10.10 -10.81 -0.11 -8.22 16 7 C 0.10 1.65 10.73 -16.79 -0.18 1.47 16 8 C -0.01 -0.23 5.92 -104.46 -0.62 -0.85 16 9 C -0.34 -6.48 5.94 -104.28 -0.62 -7.10 16 10 C 0.20 4.00 10.72 -16.81 -0.18 3.82 16 11 N -0.59 -13.56 10.34 -12.39 -0.13 -13.69 16 12 C 0.37 9.09 7.35 -158.15 -1.16 7.93 16 13 C -0.34 -8.13 9.35 -37.76 -0.35 -8.48 16 14 H 0.10 2.32 7.86 -52.48 -0.41 1.91 16 15 C 0.05 1.13 5.49 -17.33 -0.10 1.03 16 16 N -0.68 -15.47 11.43 55.56 0.64 -14.83 16 17 Si 0.93 15.85 29.57 -169.99 -5.03 10.83 16 18 H -0.26 -4.42 7.11 56.52 0.40 -4.02 16 19 H -0.27 -4.51 7.11 56.52 0.40 -4.11 16 20 H -0.25 -4.31 7.11 56.52 0.40 -3.91 16 21 N -0.51 -12.24 7.86 -12.39 -0.10 -12.33 16 22 C 0.20 4.03 10.72 -16.81 -0.18 3.85 16 23 C 0.10 1.51 10.73 -16.78 -0.18 1.33 16 24 N -0.45 -7.69 10.13 -10.81 -0.11 -7.80 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.17 2.46 6.42 -52.49 -0.34 2.12 16 29 H 0.14 2.15 6.42 -52.49 -0.34 1.81 16 30 H 0.29 5.77 8.29 -40.82 -0.34 5.43 16 31 H 0.14 2.37 6.42 -52.49 -0.34 2.03 16 32 H 0.17 2.21 6.42 -52.49 -0.34 1.88 16 LS Contribution 297.07 15.07 4.48 4.48 Total: -1.00 -29.17 297.07 -6.67 -35.84 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -2.16 Total: 3.72 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: -3.41 Total: 16.57 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.19 Total: -56.87 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.74 Total: -14.56 kcal Atomic # 14 Polarization: 15.85 SS G_CDS: -5.03 Total: 10.83 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.17 -6.67 -35.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243011000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.235 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds