Wall clock time and date at job start Tue Mar 31 2020 06:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34675 * 117.00002 * 2 1 4 4 O 1.21416 * 119.99779 * 0.02562 * 3 2 1 5 5 C 1.48267 * 120.00120 * 180.02562 * 3 2 1 6 6 N 1.32636 * 119.01482 * 179.97438 * 5 3 2 7 7 C 1.31843 * 120.92146 * 180.02562 * 6 5 3 8 8 C 1.40266 * 118.97946 * 0.02562 * 7 6 5 9 9 C 1.47802 * 120.88570 * 179.97438 * 8 7 6 10 10 C 1.40496 * 120.79657 * 179.97438 * 9 8 7 11 11 N 1.31574 * 119.08585 * 180.02562 * 10 9 8 12 12 C 1.33647 * 120.83514 * 0.02562 * 11 10 9 13 13 C 1.41099 * 119.12789 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99505 * 6.28023 * 13 12 11 15 15 C 1.40203 * 120.00492 * 186.27598 * 13 12 11 16 16 N 1.30626 * 120.00042 * 353.59648 * 15 13 12 17 17 Si 1.86801 * 120.00120 * 173.32155 * 15 13 12 18 18 H 1.48496 * 109.47378 * 94.98555 * 17 15 13 19 19 H 1.48498 * 109.46983 * 214.98939 * 17 15 13 20 20 H 1.48502 * 109.46833 * 334.98288 * 17 15 13 21 21 N 1.33654 * 121.75164 * 0.25653 * 12 11 10 22 22 C 1.31568 * 120.83736 * 359.47691 * 21 12 11 23 23 C 1.40262 * 118.22565 * 0.26543 * 8 7 6 24 24 N 1.31848 * 118.97912 * 359.44862 * 23 8 7 25 25 H 1.08995 * 109.47572 * 60.00037 * 1 2 3 26 26 H 1.09000 * 109.47223 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47116 * 299.99849 * 1 2 3 28 28 H 1.08002 * 120.50631 * 179.97438 * 7 6 5 29 29 H 1.07998 * 120.46112 * 359.97438 * 10 9 8 30 30 H 0.96997 * 120.00135 * 180.02562 * 16 15 13 31 31 H 1.08001 * 120.45736 * 180.25908 * 22 21 12 32 32 H 1.07999 * 120.50922 * 179.71111 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0634 1.2000 0.0000 4 8 1.4021 2.2182 0.0005 5 6 3.5440 1.2776 -0.0006 6 7 4.1258 2.4696 -0.0011 7 6 5.4394 2.5824 -0.0021 8 6 6.2214 1.4180 -0.0032 9 6 7.6974 1.4954 -0.0049 10 6 8.4790 0.3278 -0.0055 11 7 9.7902 0.4359 -0.0066 12 6 10.3787 1.6359 -0.0066 13 6 11.7877 1.7099 -0.0072 14 1 12.3756 0.8097 -0.1099 15 6 12.4247 2.9518 0.1256 16 7 11.7192 4.0511 0.1239 17 14 14.2815 3.0340 0.3124 18 1 14.9036 3.2555 -1.0177 19 1 14.6387 4.1547 1.2187 20 1 14.7784 1.7570 0.8848 21 7 9.6680 2.7678 -0.0004 22 6 8.3526 2.7382 -0.0044 23 6 5.5654 0.1782 -0.0089 24 7 4.2472 0.1531 -0.0019 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 5.9060 3.5564 -0.0029 29 1 8.0099 -0.6450 -0.0043 30 1 12.1598 4.9104 0.2154 31 1 7.7844 3.6567 -0.0037 32 1 6.1313 -0.7416 -0.0146 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243011000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:37 Heat of formation + Delta-G solvation = -3.765829 kcal Electronic energy + Delta-G solvation = -20574.667734 eV Core-core repulsion = 17114.316656 eV Total energy + Delta-G solvation = -3460.351078 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 286.085 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.31945 -41.20560 -40.62034 -37.62338 -36.11805 -34.96357 -34.56752 -33.83241 -31.40098 -29.33235 -28.10512 -26.25136 -25.93619 -24.05555 -23.59837 -22.48309 -20.01771 -19.70811 -18.88984 -18.11588 -17.63374 -17.56408 -17.13490 -16.71378 -16.34717 -15.87077 -15.85884 -15.01048 -14.87492 -14.70253 -14.41840 -14.20539 -13.78673 -13.18615 -13.09601 -13.03234 -12.85765 -12.74874 -12.02903 -12.01610 -11.89035 -11.85498 -11.76297 -11.33824 -11.12585 -11.02855 -10.44722 -9.41878 -9.36449 -8.62145 -6.85177 -0.96653 0.04601 0.56238 1.02865 1.24732 1.27232 1.40204 1.53191 1.58227 2.13770 2.55990 2.83279 2.90081 3.30259 3.46835 3.73596 3.80152 3.86768 3.96091 4.04212 4.08725 4.25625 4.29159 4.34074 4.70042 4.73805 4.89739 5.05497 5.06720 5.21453 5.30237 5.56462 5.85077 5.99274 6.33749 6.41191 6.41498 6.89183 7.03246 8.04435 8.17163 Molecular weight = 286.09amu Principal moments of inertia in cm(-1) A = 0.058183 B = 0.002972 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.128284 B = 9420.462683 C = 9881.197431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.340 6.340 3 C 0.546 3.454 4 O -0.507 6.507 5 C 0.211 3.789 6 N -0.467 5.467 7 C 0.108 3.892 8 C -0.021 4.021 9 C -0.327 4.327 10 C 0.196 3.804 11 N -0.613 5.613 12 C 0.346 3.654 13 C -0.387 4.387 14 H 0.101 0.899 15 C 0.018 3.982 16 N -0.718 5.718 17 Si 1.002 2.998 18 H -0.257 1.257 19 H -0.262 1.262 20 H -0.253 1.253 21 N -0.540 5.540 22 C 0.181 3.819 23 C 0.112 3.888 24 N -0.457 5.457 25 H 0.067 0.933 26 H 0.140 0.860 27 H 0.067 0.933 28 H 0.193 0.807 29 H 0.178 0.822 30 H 0.293 0.707 31 H 0.161 0.839 32 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.180 -4.609 0.187 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.254 6.254 3 C 0.387 3.613 4 O -0.393 6.393 5 C -0.053 4.053 6 N -0.183 5.183 7 C -0.060 4.060 8 C -0.028 4.028 9 C -0.338 4.338 10 C 0.020 3.980 11 N -0.332 5.332 12 C 0.115 3.885 13 C -0.419 4.419 14 H 0.119 0.881 15 C -0.209 4.209 16 N -0.338 5.338 17 Si 0.820 3.180 18 H -0.181 1.181 19 H -0.186 1.186 20 H -0.177 1.177 21 N -0.256 5.256 22 C 0.003 3.997 23 C -0.057 4.057 24 N -0.172 5.172 25 H 0.086 0.914 26 H 0.158 0.842 27 H 0.086 0.914 28 H 0.210 0.790 29 H 0.194 0.806 30 H 0.105 0.895 31 H 0.178 0.822 32 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.305 -4.043 0.211 10.148 hybrid contribution 0.341 0.399 0.047 0.527 sum -8.964 -3.644 0.258 9.680 Atomic orbital electron populations 1.23739 0.73465 1.06374 1.03035 1.86637 1.25573 1.30063 1.83141 1.19973 0.86352 0.82112 0.72869 1.90817 1.65845 1.36966 1.45650 1.21121 0.92803 0.85694 1.05686 1.67895 1.13303 1.27008 1.10052 1.23590 0.86894 1.00165 0.95348 1.20626 0.93977 0.95605 0.92569 1.19500 0.91017 0.96610 1.26681 1.23395 0.89266 0.98187 0.87141 1.68719 1.12010 1.28183 1.24268 1.20353 0.95542 0.83048 0.89507 1.20068 0.89442 0.95731 1.36625 0.88050 1.27229 1.06836 0.93982 0.92878 1.70111 1.40152 0.99707 1.23794 0.84883 0.73546 0.79867 0.79734 1.18126 1.18617 1.17681 1.69343 1.06102 1.30445 1.19729 1.23596 0.91460 0.96766 0.87858 1.23750 0.88658 0.98663 0.94640 1.68213 1.08999 1.30482 1.09517 0.91393 0.84230 0.91407 0.79027 0.80562 0.89528 0.82184 0.78019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.34 -8.96 10.35 -55.85 -0.58 -9.54 16 3 C 0.55 17.56 7.98 70.49 0.56 18.12 16 4 O -0.51 -18.02 16.64 20.11 0.33 -17.68 16 5 C 0.21 7.15 7.59 137.50 1.04 8.19 16 6 N -0.47 -16.15 10.10 -188.13 -1.90 -18.05 16 7 C 0.11 3.36 10.73 85.18 0.91 4.27 16 8 C -0.02 -0.66 5.92 -19.76 -0.12 -0.78 16 9 C -0.33 -11.96 5.94 -19.65 -0.12 -12.07 16 10 C 0.20 7.43 10.72 85.28 0.91 8.34 16 11 N -0.61 -28.67 10.34 -193.11 -2.00 -30.66 16 12 C 0.35 17.64 7.35 134.91 0.99 18.64 16 13 C -0.39 -19.10 9.35 23.45 0.22 -18.88 16 14 H 0.10 4.77 7.86 -2.91 -0.02 4.75 16 15 C 0.02 0.79 5.49 85.35 0.47 1.26 16 16 N -0.72 -33.78 11.43 21.87 0.25 -33.53 16 17 Si 1.00 32.95 29.57 68.60 2.03 34.98 16 18 H -0.26 -8.10 7.11 99.48 0.71 -7.40 16 19 H -0.26 -8.18 7.11 99.48 0.71 -7.47 16 20 H -0.25 -8.17 7.11 99.48 0.71 -7.47 16 21 N -0.54 -26.77 7.86 -193.11 -1.52 -28.29 16 22 C 0.18 7.41 10.72 85.28 0.91 8.33 16 23 C 0.11 3.17 10.73 85.18 0.91 4.08 16 24 N -0.46 -14.29 10.13 -188.13 -1.91 -16.20 16 25 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.19 5.07 6.42 -2.91 -0.02 5.05 16 29 H 0.18 4.99 6.42 -2.91 -0.02 4.98 16 30 H 0.29 12.15 8.29 -92.71 -0.77 11.39 16 31 H 0.16 5.47 6.42 -2.91 -0.02 5.45 16 32 H 0.20 4.36 6.42 -2.91 -0.02 4.34 16 Total: -1.00 -64.61 297.07 3.82 -60.80 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 1.20 Total: 17.03 kcal Atomic # 6 Polarization: 33.23 SS G_CDS: 7.91 Total: 41.14 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -7.07 Total: -126.72 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.24 Total: -27.23 kcal Atomic # 14 Polarization: 32.95 SS G_CDS: 2.03 Total: 34.98 kcal Total: -64.61 3.82 -60.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243011000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.030 kcal (2) G-P(sol) polarization free energy of solvation -64.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds