Wall clock time and date at job start Tue Mar 31 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76202 * 100.00072 * 2 1 4 4 N 1.32672 * 119.54098 * 0.02562 * 3 2 1 5 5 C 1.31676 * 121.62352 * 179.97438 * 4 3 2 6 6 C 1.39624 * 120.52203 * 0.02562 * 5 4 3 7 7 C 1.47776 * 120.47123 * 179.97438 * 6 5 4 8 8 C 1.40005 * 119.45969 * 359.74245 * 7 6 5 9 9 C 1.36527 * 119.46148 * 179.79012 * 8 7 6 10 10 C 1.41335 * 118.42625 * 0.48000 * 9 8 7 11 11 C 1.41017 * 120.54611 * 179.72314 * 10 9 8 12 12 H 1.08001 * 119.99650 * 203.73599 * 11 10 9 13 13 C 1.39961 * 119.99909 * 23.74737 * 11 10 9 14 14 N 1.30833 * 120.00413 * 17.63382 * 13 11 10 15 15 Si 1.86802 * 120.00055 * 197.63633 * 13 11 10 16 16 H 1.48499 * 109.46904 * 59.99332 * 15 13 11 17 17 H 1.48499 * 109.47614 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47155 * 299.99688 * 15 13 11 19 19 C 1.40958 * 118.90863 * 359.74372 * 10 9 8 20 20 N 1.31246 * 120.40626 * 0.02562 * 19 10 9 21 21 C 1.40291 * 119.05775 * 359.97438 * 6 5 4 22 22 C 1.36905 * 118.50260 * 0.02562 * 21 6 5 23 23 C 1.50693 * 120.31000 * 179.72138 * 22 21 6 24 24 H 1.09000 * 109.47203 * 59.99896 * 1 2 3 25 25 H 1.09001 * 109.47054 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47275 * 299.99979 * 1 2 3 27 27 H 1.08004 * 119.73758 * 180.02562 * 5 4 3 28 28 H 1.08001 * 120.26566 * 0.02562 * 8 7 6 29 29 H 1.08002 * 120.78487 * 180.20615 * 9 8 7 30 30 H 0.97003 * 119.99743 * 180.02562 * 14 13 11 31 31 H 1.08004 * 119.79838 * 180.02562 * 19 10 9 32 32 H 1.08004 * 120.75212 * 179.97438 * 21 6 5 33 33 H 1.09005 * 109.47222 * 90.00032 * 23 22 21 34 34 H 1.09000 * 109.47160 * 209.99790 * 23 22 21 35 35 H 1.08997 * 109.47490 * 330.00197 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0929 2.5799 0.0005 5 6 1.2743 3.8841 0.0010 6 6 2.5633 4.4208 0.0005 7 6 2.7655 5.8846 0.0005 8 6 1.6522 6.7335 -0.0044 9 6 1.8391 8.0860 0.0000 10 6 3.1624 8.5824 -0.0010 11 6 3.4069 9.9712 -0.0025 12 1 4.3436 10.3541 -0.3797 13 6 2.4357 10.8532 0.4851 14 7 1.4692 10.4068 1.2456 15 14 2.5193 12.6679 0.0499 16 1 2.4412 12.8275 -1.4244 17 1 1.3832 13.3823 0.6855 18 1 3.7998 13.2365 0.5422 19 6 4.2337 7.6664 -0.0009 20 7 4.0031 6.3743 -0.0004 21 6 3.6636 3.5505 0.0000 22 6 3.4298 2.2016 -0.0005 23 6 4.5817 1.2300 -0.0074 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.4192 4.5439 0.0019 28 1 0.6538 6.3219 -0.0078 29 1 0.9956 8.7605 -0.0004 30 1 0.7960 11.0182 1.5832 31 1 5.2508 8.0299 -0.0012 32 1 4.6726 3.9360 -0.0008 33 1 4.8645 0.9945 1.0186 34 1 4.2831 0.3161 -0.5209 35 1 5.4307 1.6767 -0.5249 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243130945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:46 Heat of formation + Delta-G solvation = 41.796884 kcal Electronic energy + Delta-G solvation = -18823.087671 eV Core-core repulsion = 15911.005555 eV Total energy + Delta-G solvation = -2912.082116 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79116 -38.25683 -34.51720 -33.48397 -32.29313 -30.85353 -29.49584 -28.80151 -26.94890 -25.86562 -23.57928 -22.40976 -21.29198 -20.43687 -17.79651 -17.50580 -16.29368 -16.00256 -15.36554 -14.82450 -14.43499 -14.39254 -14.00594 -13.50619 -13.31014 -13.15917 -12.90324 -12.77199 -12.41394 -12.30955 -12.12031 -11.99137 -11.82966 -11.55178 -11.50918 -11.12028 -10.81246 -10.30806 -10.11777 -9.84696 -9.41786 -9.19829 -9.07646 -8.49446 -8.24071 -7.91646 -7.20753 -7.00816 -4.68079 1.16126 1.70806 1.80296 2.38199 2.53419 2.83920 2.87502 2.89274 3.04840 3.63626 4.05821 4.49042 4.85669 5.09798 5.18580 5.29810 5.32597 5.44960 5.50019 5.51751 5.71008 5.74272 5.86908 5.90255 6.07426 6.24314 6.36950 6.53413 6.54519 6.68254 6.80814 6.89747 7.04979 7.05962 7.51815 7.62077 7.73231 8.15280 8.18279 8.36389 8.47003 9.40764 9.73465 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.040571 B = 0.003277 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.986869 B = 8541.751416 C = 9146.613602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.094 6.094 3 C 0.076 3.924 4 N -0.478 5.478 5 C 0.082 3.918 6 C -0.017 4.017 7 C -0.014 4.014 8 C -0.117 4.117 9 C -0.145 4.145 10 C 0.070 3.930 11 C -0.426 4.426 12 H 0.089 0.911 13 C 0.071 3.929 14 N -0.770 5.770 15 Si 0.918 3.082 16 H -0.259 1.259 17 H -0.275 1.275 18 H -0.261 1.261 19 C -0.014 4.014 20 N -0.445 5.445 21 C -0.066 4.066 22 C -0.109 4.109 23 C -0.108 4.108 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.156 0.844 28 H 0.102 0.898 29 H 0.128 0.872 30 H 0.290 0.710 31 H 0.131 0.869 32 H 0.143 0.857 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 -10.032 -1.550 10.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.143 5.857 3 C -0.173 4.173 4 N -0.188 5.188 5 C -0.079 4.079 6 C -0.022 4.022 7 C -0.148 4.148 8 C -0.137 4.137 9 C -0.170 4.170 10 C 0.065 3.935 11 C -0.454 4.454 12 H 0.107 0.893 13 C -0.151 4.151 14 N -0.392 5.392 15 Si 0.742 3.258 16 H -0.184 1.184 17 H -0.199 1.199 18 H -0.185 1.185 19 C -0.181 4.181 20 N -0.152 5.152 21 C -0.094 4.094 22 C -0.116 4.116 23 C -0.166 4.166 24 H 0.103 0.897 25 H 0.111 0.889 26 H 0.103 0.897 27 H 0.173 0.827 28 H 0.120 0.880 29 H 0.146 0.854 30 H 0.101 0.899 31 H 0.149 0.851 32 H 0.160 0.840 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.549 -11.936 -1.394 12.029 hybrid contribution -0.921 3.063 -0.025 3.198 sum -1.470 -8.873 -1.419 9.105 Atomic orbital electron populations 1.23342 0.94862 1.05096 1.06678 1.85280 1.07283 1.00234 1.92934 1.22564 0.91423 0.97487 1.05813 1.67796 1.32927 1.04195 1.13912 1.22701 0.96220 0.90133 0.98894 1.19649 0.93267 0.93148 0.96138 1.18529 0.89293 0.90095 1.16835 1.21281 0.97337 0.94640 1.00471 1.21311 0.97844 0.93573 1.04233 1.18638 0.92304 0.94256 0.88308 1.19715 1.01969 0.90865 1.32848 0.89280 1.26134 0.93929 1.02677 0.92377 1.69788 1.10343 1.38753 1.20360 0.86174 0.79278 0.80085 0.80311 1.18371 1.19936 1.18484 1.22454 0.97937 0.87553 1.10148 1.66901 1.22962 1.16572 1.08765 1.21229 1.00208 0.90916 0.97004 1.20088 0.93933 0.95255 1.02336 1.20714 0.95630 0.97666 1.02560 0.89711 0.88924 0.89676 0.82670 0.87985 0.85424 0.89901 0.85147 0.83972 0.90914 0.91158 0.91083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.63 101.05 0.97 -0.53 16 2 S -0.09 -1.27 20.90 -107.50 -2.25 -3.52 16 3 C 0.08 1.27 6.97 -16.75 -0.12 1.16 16 4 N -0.48 -8.53 9.10 -11.67 -0.11 -8.64 16 5 C 0.08 1.53 10.59 -17.10 -0.18 1.34 16 6 C -0.02 -0.34 5.90 -104.71 -0.62 -0.96 16 7 C -0.01 -0.32 6.74 -82.76 -0.56 -0.87 16 8 C -0.12 -2.62 9.39 -39.54 -0.37 -2.99 16 9 C -0.15 -3.50 8.74 -39.02 -0.34 -3.84 16 10 C 0.07 1.72 5.59 -106.64 -0.60 1.13 16 11 C -0.43 -10.09 9.06 -37.88 -0.34 -10.44 16 12 H 0.09 1.97 7.91 -52.49 -0.41 1.56 16 13 C 0.07 1.58 5.17 -17.33 -0.09 1.49 16 14 N -0.77 -17.88 10.92 55.55 0.61 -17.27 16 15 Si 0.92 16.58 29.59 -169.99 -5.03 11.55 16 16 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 17 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 18 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 19 C -0.01 -0.34 10.97 -16.77 -0.18 -0.52 16 20 N -0.44 -10.47 9.45 -9.12 -0.09 -10.56 16 21 C -0.07 -1.23 9.29 -39.29 -0.36 -1.59 16 22 C -0.11 -1.79 5.88 -104.67 -0.62 -2.41 16 23 C -0.11 -1.38 9.58 36.00 0.34 -1.04 16 24 H 0.08 1.02 8.12 -51.92 -0.42 0.60 16 25 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 26 H 0.08 1.03 8.12 -51.91 -0.42 0.61 16 27 H 0.16 2.63 6.16 -52.48 -0.32 2.31 16 28 H 0.10 1.99 6.17 -52.49 -0.32 1.66 16 29 H 0.13 3.10 6.19 -52.49 -0.32 2.78 16 30 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 31 H 0.13 2.81 8.06 -52.48 -0.42 2.39 16 32 H 0.14 2.59 7.60 -52.48 -0.40 2.19 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.84 6.78 -51.93 -0.35 0.49 16 35 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 LS Contribution 312.56 15.07 4.71 4.71 Total: -1.00 -26.21 312.56 -9.02 -35.23 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.80 Total: 8.56 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -3.06 Total: -20.07 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.41 Total: -36.46 kcal Atomic # 14 Polarization: 16.58 SS G_CDS: -5.03 Total: 11.55 kcal Atomic # 16 Polarization: -1.27 SS G_CDS: -2.25 Total: -3.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.21 -9.02 -35.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243130945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.027 kcal (2) G-P(sol) polarization free energy of solvation -26.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds