Wall clock time and date at job start Tue Mar 31 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76202 * 100.00072 * 2 1 4 4 N 1.32672 * 119.54098 * 0.02562 * 3 2 1 5 5 C 1.31676 * 121.62352 * 179.97438 * 4 3 2 6 6 C 1.39624 * 120.52203 * 0.02562 * 5 4 3 7 7 C 1.47776 * 120.47123 * 179.97438 * 6 5 4 8 8 C 1.40005 * 119.45969 * 359.74245 * 7 6 5 9 9 C 1.36527 * 119.46148 * 179.79012 * 8 7 6 10 10 C 1.41335 * 118.42625 * 0.48000 * 9 8 7 11 11 C 1.41017 * 120.54611 * 179.72314 * 10 9 8 12 12 H 1.08001 * 119.99650 * 203.73599 * 11 10 9 13 13 C 1.39961 * 119.99909 * 23.74737 * 11 10 9 14 14 N 1.30833 * 120.00413 * 17.63382 * 13 11 10 15 15 Si 1.86802 * 120.00055 * 197.63633 * 13 11 10 16 16 H 1.48499 * 109.46904 * 59.99332 * 15 13 11 17 17 H 1.48499 * 109.47614 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47155 * 299.99688 * 15 13 11 19 19 C 1.40958 * 118.90863 * 359.74372 * 10 9 8 20 20 N 1.31246 * 120.40626 * 0.02562 * 19 10 9 21 21 C 1.40291 * 119.05775 * 359.97438 * 6 5 4 22 22 C 1.36905 * 118.50260 * 0.02562 * 21 6 5 23 23 C 1.50693 * 120.31000 * 179.72138 * 22 21 6 24 24 H 1.09000 * 109.47203 * 59.99896 * 1 2 3 25 25 H 1.09001 * 109.47054 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47275 * 299.99979 * 1 2 3 27 27 H 1.08004 * 119.73758 * 180.02562 * 5 4 3 28 28 H 1.08001 * 120.26566 * 0.02562 * 8 7 6 29 29 H 1.08002 * 120.78487 * 180.20615 * 9 8 7 30 30 H 0.97003 * 119.99743 * 180.02562 * 14 13 11 31 31 H 1.08004 * 119.79838 * 180.02562 * 19 10 9 32 32 H 1.08004 * 120.75212 * 179.97438 * 21 6 5 33 33 H 1.09005 * 109.47222 * 90.00032 * 23 22 21 34 34 H 1.09000 * 109.47160 * 209.99790 * 23 22 21 35 35 H 1.08997 * 109.47490 * 330.00197 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.0929 2.5799 0.0005 5 6 1.2743 3.8841 0.0010 6 6 2.5633 4.4208 0.0005 7 6 2.7655 5.8846 0.0005 8 6 1.6522 6.7335 -0.0044 9 6 1.8391 8.0860 0.0000 10 6 3.1624 8.5824 -0.0010 11 6 3.4069 9.9712 -0.0025 12 1 4.3436 10.3541 -0.3797 13 6 2.4357 10.8532 0.4851 14 7 1.4692 10.4068 1.2456 15 14 2.5193 12.6679 0.0499 16 1 2.4412 12.8275 -1.4244 17 1 1.3832 13.3823 0.6855 18 1 3.7998 13.2365 0.5422 19 6 4.2337 7.6664 -0.0009 20 7 4.0031 6.3743 -0.0004 21 6 3.6636 3.5505 0.0000 22 6 3.4298 2.2016 -0.0005 23 6 4.5817 1.2300 -0.0074 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.4192 4.5439 0.0019 28 1 0.6538 6.3219 -0.0078 29 1 0.9956 8.7605 -0.0004 30 1 0.7960 11.0182 1.5832 31 1 5.2508 8.0299 -0.0012 32 1 4.6726 3.9360 -0.0008 33 1 4.8645 0.9945 1.0186 34 1 4.2831 0.3161 -0.5209 35 1 5.4307 1.6767 -0.5249 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243130945.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:46 Heat of formation + Delta-G solvation = 29.396746 kcal Electronic energy + Delta-G solvation = -18823.625381 eV Core-core repulsion = 15911.005555 eV Total energy + Delta-G solvation = -2912.619826 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.24744 -39.95485 -36.21721 -34.77292 -33.85533 -32.63183 -31.12336 -29.78591 -28.14927 -27.54032 -25.13477 -23.97493 -22.96131 -21.99922 -19.43559 -18.90452 -17.78477 -17.60237 -16.91778 -16.19723 -16.01591 -15.67769 -15.53305 -14.73908 -14.64340 -14.49223 -14.25410 -14.18639 -13.81874 -13.60197 -13.55521 -13.37572 -13.23226 -13.06729 -12.94034 -12.59634 -12.27356 -11.80525 -11.44295 -11.40710 -10.98367 -10.60429 -10.37369 -10.30514 -10.03379 -9.51333 -8.83852 -8.36194 -6.46747 -0.31437 0.30348 0.62650 0.86766 1.07731 1.32451 1.38612 1.50552 1.55145 2.13458 2.50926 2.88274 3.51926 3.65208 3.70287 3.95678 4.03067 4.08415 4.29506 4.37042 4.39957 4.52828 4.63978 4.68652 4.76618 4.82060 4.94550 4.98785 5.06197 5.13899 5.21330 5.29041 5.39377 5.58360 5.78507 5.85997 5.94361 6.39370 6.61186 6.66679 6.76586 7.60469 8.09539 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.040571 B = 0.003277 C = 0.003061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.986869 B = 8541.751416 C = 9146.613602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.063 6.063 3 C 0.068 3.932 4 N -0.484 5.484 5 C 0.083 3.917 6 C -0.048 4.048 7 C -0.016 4.016 8 C -0.122 4.122 9 C -0.162 4.162 10 C 0.044 3.956 11 C -0.457 4.457 12 H 0.095 0.905 13 C 0.035 3.965 14 N -0.802 5.802 15 Si 0.992 3.008 16 H -0.258 1.258 17 H -0.266 1.266 18 H -0.255 1.255 19 C -0.034 4.034 20 N -0.456 5.456 21 C -0.070 4.070 22 C -0.112 4.112 23 C -0.105 4.105 24 H 0.079 0.921 25 H 0.125 0.875 26 H 0.079 0.921 27 H 0.166 0.834 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.298 0.702 31 H 0.143 0.857 32 H 0.139 0.861 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -11.711 -1.719 11.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.174 5.826 3 C -0.181 4.181 4 N -0.196 5.196 5 C -0.078 4.078 6 C -0.054 4.054 7 C -0.151 4.151 8 C -0.143 4.143 9 C -0.187 4.187 10 C 0.039 3.961 11 C -0.484 4.484 12 H 0.113 0.887 13 C -0.184 4.184 14 N -0.425 5.425 15 Si 0.811 3.189 16 H -0.182 1.182 17 H -0.190 1.190 18 H -0.179 1.179 19 C -0.199 4.199 20 N -0.163 5.163 21 C -0.097 4.097 22 C -0.120 4.120 23 C -0.163 4.163 24 H 0.099 0.901 25 H 0.143 0.857 26 H 0.098 0.902 27 H 0.183 0.817 28 H 0.145 0.855 29 H 0.138 0.862 30 H 0.109 0.891 31 H 0.160 0.840 32 H 0.157 0.843 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.849 -13.631 -1.560 13.746 hybrid contribution -0.876 3.214 0.042 3.332 sum -1.725 -10.416 -1.518 10.667 Atomic orbital electron populations 1.23467 0.93287 1.07103 1.06192 1.85199 1.08962 0.96446 1.91982 1.23307 0.91579 0.99652 1.03520 1.67910 1.33320 1.03819 1.14522 1.22842 0.95937 0.90816 0.98171 1.19643 0.94636 0.91981 0.99098 1.18987 0.89036 0.91637 1.15431 1.21539 0.98688 0.94127 0.99903 1.21359 0.97639 0.94290 1.05454 1.18933 0.92764 0.95183 0.89201 1.19991 1.03149 0.91080 1.34229 0.88704 1.26982 0.93046 1.06892 0.91519 1.69824 1.11084 1.40575 1.21025 0.85086 0.79562 0.74368 0.79877 1.18202 1.19041 1.17882 1.22685 0.98475 0.87785 1.10915 1.66938 1.23592 1.16455 1.09316 1.21314 0.99683 0.91870 0.96822 1.20472 0.95283 0.95088 1.01148 1.20790 0.94530 0.97141 1.03800 0.90149 0.85671 0.90193 0.81704 0.85536 0.86197 0.89103 0.84003 0.84291 0.89491 0.89938 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.63 113.37 1.09 -1.51 16 2 S -0.06 -1.50 20.90 -56.49 -1.18 -2.68 16 3 C 0.07 2.15 6.97 84.85 0.59 2.74 16 4 N -0.48 -16.59 9.10 -190.83 -1.74 -18.33 16 5 C 0.08 3.04 10.59 85.05 0.90 3.94 16 6 C -0.05 -1.95 5.90 -19.92 -0.12 -2.07 16 7 C -0.02 -0.75 6.74 41.91 0.28 -0.47 16 8 C -0.12 -5.62 9.39 22.30 0.21 -5.41 16 9 C -0.16 -8.14 8.74 22.63 0.20 -7.94 16 10 C 0.04 2.26 5.59 -21.17 -0.12 2.14 16 11 C -0.46 -22.34 9.06 23.37 0.21 -22.12 16 12 H 0.09 4.33 7.91 -2.91 -0.02 4.31 16 13 C 0.03 1.56 5.17 85.26 0.44 2.00 16 14 N -0.80 -38.06 10.92 21.83 0.24 -37.82 16 15 Si 0.99 33.93 29.59 68.60 2.03 35.96 16 16 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 17 H -0.27 -8.64 7.11 99.48 0.71 -7.94 16 18 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 19 C -0.03 -1.65 10.97 85.45 0.94 -0.71 16 20 N -0.46 -22.06 9.45 -182.76 -1.73 -23.78 16 21 C -0.07 -2.54 9.29 22.46 0.21 -2.33 16 22 C -0.11 -3.52 5.88 -19.90 -0.12 -3.63 16 23 C -0.11 -2.41 9.58 71.23 0.68 -1.73 16 24 H 0.08 1.71 8.12 -2.40 -0.02 1.69 16 25 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.08 1.71 8.12 -2.39 -0.02 1.69 16 27 H 0.17 5.52 6.16 -2.91 -0.02 5.50 16 28 H 0.13 4.98 6.17 -2.91 -0.02 4.96 16 29 H 0.12 6.08 6.19 -2.91 -0.02 6.06 16 30 H 0.30 12.63 8.30 -92.71 -0.77 11.86 16 31 H 0.14 6.37 8.06 -2.91 -0.02 6.35 16 32 H 0.14 5.08 7.60 -2.91 -0.02 5.05 16 33 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 34 H 0.08 1.69 6.78 -2.39 -0.02 1.68 16 35 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 Total: -1.00 -57.27 312.56 4.14 -53.13 By element: Atomic # 1 Polarization: 29.52 SS G_CDS: 1.12 Total: 30.64 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 5.40 Total: -37.10 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.23 Total: -79.94 kcal Atomic # 14 Polarization: 33.93 SS G_CDS: 2.03 Total: 35.96 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -1.18 Total: -2.68 kcal Total: -57.27 4.14 -53.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243130945.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.529 kcal (2) G-P(sol) polarization free energy of solvation -57.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds