Wall clock time and date at job start Tue Mar 31 2020 06:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76201 * 99.99932 * 2 1 4 4 N 1.32580 * 119.57242 * 359.96955 * 3 2 1 5 5 C 1.31713 * 121.74415 * 180.02562 * 4 3 2 6 6 C 1.39324 * 120.67959 * 359.74452 * 5 4 3 7 7 C 1.48186 * 120.45780 * 180.26490 * 6 5 4 8 8 C 1.39994 * 119.61201 * 0.27046 * 7 6 5 9 9 C 1.38649 * 119.45991 * 179.97438 * 8 7 6 10 10 C 1.38322 * 118.70011 * 0.02562 * 9 8 7 11 11 C 1.40675 * 119.19979 * 359.97438 * 10 9 8 12 12 C 1.41363 * 119.76254 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99834 * 359.97438 * 12 11 10 14 14 C 1.40008 * 119.99748 * 179.97438 * 12 11 10 15 15 N 1.30749 * 120.00070 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99706 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47092 * 60.00128 * 16 14 12 18 18 H 1.48503 * 109.46863 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46901 * 300.00036 * 16 14 12 20 20 N 1.32266 * 119.61519 * 179.97438 * 7 6 5 21 21 C 1.40066 * 119.09131 * 0.53474 * 6 5 4 22 22 C 1.37994 * 118.40069 * 359.47488 * 21 6 5 23 23 C 1.50701 * 120.38779 * 180.23199 * 22 21 6 24 24 H 1.09001 * 109.47326 * 300.00214 * 1 2 3 25 25 H 1.09002 * 109.46805 * 60.00262 * 1 2 3 26 26 H 1.09005 * 109.47272 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.66498 * 179.97438 * 5 4 3 28 28 H 1.07997 * 120.26805 * 0.02562 * 8 7 6 29 29 H 1.08002 * 120.65134 * 180.02562 * 9 8 7 30 30 H 1.08002 * 120.39651 * 180.02562 * 10 9 8 31 31 H 0.96997 * 120.00510 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.80401 * 179.75759 * 21 6 5 33 33 H 1.08996 * 109.47211 * 90.00433 * 23 22 21 34 34 H 1.09006 * 109.46937 * 210.00421 * 23 22 21 35 35 H 1.08998 * 109.46754 * 330.00226 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0940 2.5798 -0.0006 5 6 1.2734 3.8847 -0.0011 6 6 2.5573 4.4258 0.0043 7 6 2.7534 5.8946 0.0096 8 6 1.6385 6.7413 0.0148 9 6 1.8257 8.1151 0.0203 10 6 3.1175 8.6095 0.0198 11 6 4.1974 7.7080 0.0144 12 6 5.5225 8.2003 0.0133 13 1 5.7030 9.2650 0.0162 14 6 6.6010 7.3074 0.0085 15 7 6.3824 6.0183 0.0044 16 14 8.3520 7.9580 0.0077 17 1 8.5743 8.7824 1.2226 18 1 9.3036 6.8179 0.0016 19 1 8.5701 8.7907 -1.2023 20 7 3.9796 6.3903 0.0152 21 6 3.6602 3.5624 -0.0011 22 6 3.4288 2.2020 -0.0005 23 6 4.5825 1.2325 -0.0009 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.4165 4.5421 -0.0021 28 1 0.6409 6.3277 0.0155 29 1 0.9794 8.7861 0.0249 30 1 3.2949 9.6749 0.0244 31 1 7.1295 5.3997 0.0007 32 1 4.6675 3.9519 -0.0011 33 1 4.8612 0.9990 1.0266 34 1 4.2877 0.3172 -0.5143 35 1 5.4329 1.6799 -0.5154 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243136161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:53 Heat of formation + Delta-G solvation = 54.571496 kcal Electronic energy + Delta-G solvation = -19296.634256 eV Core-core repulsion = 16385.106088 eV Total energy + Delta-G solvation = -2911.528167 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.75650 -38.05218 -33.90489 -33.35876 -32.41512 -30.57742 -29.25853 -28.69916 -27.01118 -25.81228 -23.63506 -22.43565 -21.19375 -20.18366 -17.69992 -17.52487 -16.15935 -15.67892 -15.08660 -14.57011 -14.50889 -14.37710 -13.95280 -13.47385 -13.29588 -13.14842 -12.74587 -12.65677 -12.34263 -12.22459 -12.20408 -11.97443 -11.35960 -11.28934 -11.13368 -10.84767 -10.60821 -10.29942 -10.12634 -9.84981 -9.34211 -9.17169 -9.00709 -8.29940 -7.82995 -7.75823 -7.02877 -6.53838 -4.63455 1.15425 1.73579 1.76668 2.35753 2.70758 2.94157 3.02791 3.04773 3.13661 3.86856 4.16102 4.71778 4.86540 5.11326 5.18937 5.28610 5.32860 5.48864 5.61030 5.74027 5.80245 5.84657 5.86661 5.92091 6.17172 6.29226 6.38133 6.53329 6.62833 6.68211 6.97380 7.02953 7.10129 7.23400 7.44356 7.59871 7.89382 8.07608 8.14936 8.54679 8.79467 9.90970 10.19203 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.004829 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.770267 B = 5796.902187 C = 7180.217214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.088 6.088 3 C 0.098 3.902 4 N -0.492 5.492 5 C 0.109 3.891 6 C -0.061 4.061 7 C 0.176 3.824 8 C -0.299 4.299 9 C -0.058 4.058 10 C -0.268 4.268 11 C 0.257 3.743 12 C -0.430 4.430 13 H 0.085 0.915 14 C 0.072 3.928 15 N -0.720 5.720 16 Si 0.909 3.091 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.265 1.265 20 N -0.467 5.467 21 C -0.028 4.028 22 C -0.124 4.124 23 C -0.107 4.107 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.159 0.841 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.274 0.726 32 H 0.168 0.832 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.454 -8.781 -0.021 9.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.150 5.850 3 C -0.150 4.150 4 N -0.203 5.203 5 C -0.052 4.052 6 C -0.066 4.066 7 C 0.031 3.969 8 C -0.322 4.322 9 C -0.082 4.082 10 C -0.292 4.292 11 C 0.131 3.869 12 C -0.461 4.461 13 H 0.103 0.897 14 C -0.153 4.153 15 N -0.342 5.342 16 Si 0.733 3.267 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.189 1.189 20 N -0.180 5.180 21 C -0.055 4.055 22 C -0.132 4.132 23 C -0.164 4.164 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.111 0.889 27 H 0.176 0.824 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.185 0.815 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.761 -10.905 -0.018 11.535 hybrid contribution -0.152 2.483 0.006 2.488 sum -3.912 -8.422 -0.012 9.286 Atomic orbital electron populations 1.23364 0.94913 1.05170 1.06718 1.85380 1.07193 0.99929 1.92515 1.22707 0.91600 0.97679 1.03016 1.67831 1.32871 1.04131 1.15452 1.22760 0.96419 0.90137 0.95904 1.19815 0.93436 0.93603 0.99742 1.19522 0.90732 0.90409 0.96202 1.21189 0.97343 0.93943 1.19750 1.20786 0.96081 0.94463 0.96884 1.21822 0.93310 0.99104 1.14915 1.18494 0.92977 0.86819 0.88566 1.19581 0.89213 0.94402 1.42892 0.89736 1.26022 1.01366 0.94616 0.93319 1.70040 1.32793 1.02428 1.28916 0.86360 0.81002 0.79408 0.79924 1.18926 1.20139 1.18930 1.68721 1.18387 1.14174 1.16693 1.22009 1.01768 0.90426 0.91297 1.20457 0.93866 0.95466 1.03441 1.20696 0.95722 0.97411 1.02604 0.89633 0.89642 0.88852 0.82428 0.88351 0.88278 0.88115 0.91532 0.81478 0.90898 0.91303 0.90741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 9.63 101.05 0.97 -0.53 16 2 S -0.09 -1.20 20.91 -107.50 -2.25 -3.45 16 3 C 0.10 1.69 6.97 -16.82 -0.12 1.57 16 4 N -0.49 -8.78 9.10 -11.78 -0.11 -8.89 16 5 C 0.11 2.03 10.58 -17.20 -0.18 1.85 16 6 C -0.06 -1.28 5.89 -104.72 -0.62 -1.90 16 7 C 0.18 4.18 6.74 -82.94 -0.56 3.62 16 8 C -0.30 -6.51 9.48 -38.77 -0.37 -6.87 16 9 C -0.06 -1.26 10.15 -39.40 -0.40 -1.66 16 10 C -0.27 -6.37 9.83 -38.63 -0.38 -6.75 16 11 C 0.26 6.77 6.55 -85.01 -0.56 6.21 16 12 C -0.43 -11.02 9.14 -37.73 -0.34 -11.37 16 13 H 0.08 2.02 7.85 -52.49 -0.41 1.61 16 14 C 0.07 1.74 5.50 -17.35 -0.10 1.64 16 15 N -0.72 -17.87 11.18 55.55 0.62 -17.25 16 16 Si 0.91 17.85 29.56 -169.99 -5.02 12.82 16 17 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 19 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 20 N -0.47 -12.24 6.99 -7.68 -0.05 -12.30 16 21 C -0.03 -0.56 9.35 -38.99 -0.36 -0.93 16 22 C -0.12 -2.19 5.91 -104.30 -0.62 -2.81 16 23 C -0.11 -1.52 9.58 36.01 0.35 -1.17 16 24 H 0.08 1.01 8.12 -51.92 -0.42 0.59 16 25 H 0.08 1.01 8.12 -51.91 -0.42 0.59 16 26 H 0.09 0.81 8.14 -51.91 -0.42 0.39 16 27 H 0.16 2.61 6.17 -52.49 -0.32 2.29 16 28 H 0.10 1.84 6.19 -52.49 -0.32 1.52 16 29 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 30 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.27 6.15 8.29 -40.82 -0.34 5.81 16 32 H 0.17 3.67 7.34 -52.49 -0.39 3.29 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.89 6.79 -51.93 -0.35 0.54 16 35 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 LS Contribution 313.73 15.07 4.73 4.73 Total: -1.00 -27.68 313.73 -9.25 -36.93 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -3.89 Total: 6.49 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: -3.28 Total: -19.09 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.46 Total: -38.43 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.02 Total: 12.82 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -2.25 Total: -3.45 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.68 -9.25 -36.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243136161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.506 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds