Wall clock time and date at job start Tue Mar 31 2020 06:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76201 * 99.99932 * 2 1 4 4 N 1.32580 * 119.57242 * 359.96955 * 3 2 1 5 5 C 1.31713 * 121.74415 * 180.02562 * 4 3 2 6 6 C 1.39324 * 120.67959 * 359.74452 * 5 4 3 7 7 C 1.48186 * 120.45780 * 180.26490 * 6 5 4 8 8 C 1.39994 * 119.61201 * 0.27046 * 7 6 5 9 9 C 1.38649 * 119.45991 * 179.97438 * 8 7 6 10 10 C 1.38322 * 118.70011 * 0.02562 * 9 8 7 11 11 C 1.40675 * 119.19979 * 359.97438 * 10 9 8 12 12 C 1.41363 * 119.76254 * 179.97438 * 11 10 9 13 13 H 1.07993 * 119.99834 * 359.97438 * 12 11 10 14 14 C 1.40008 * 119.99748 * 179.97438 * 12 11 10 15 15 N 1.30749 * 120.00070 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99706 * 180.02562 * 14 12 11 17 17 H 1.48491 * 109.47092 * 60.00128 * 16 14 12 18 18 H 1.48503 * 109.46863 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46901 * 300.00036 * 16 14 12 20 20 N 1.32266 * 119.61519 * 179.97438 * 7 6 5 21 21 C 1.40066 * 119.09131 * 0.53474 * 6 5 4 22 22 C 1.37994 * 118.40069 * 359.47488 * 21 6 5 23 23 C 1.50701 * 120.38779 * 180.23199 * 22 21 6 24 24 H 1.09001 * 109.47326 * 300.00214 * 1 2 3 25 25 H 1.09002 * 109.46805 * 60.00262 * 1 2 3 26 26 H 1.09005 * 109.47272 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.66498 * 179.97438 * 5 4 3 28 28 H 1.07997 * 120.26805 * 0.02562 * 8 7 6 29 29 H 1.08002 * 120.65134 * 180.02562 * 9 8 7 30 30 H 1.08002 * 120.39651 * 180.02562 * 10 9 8 31 31 H 0.96997 * 120.00510 * 179.97438 * 15 14 12 32 32 H 1.08002 * 120.80401 * 179.75759 * 21 6 5 33 33 H 1.08996 * 109.47211 * 90.00433 * 23 22 21 34 34 H 1.09006 * 109.46937 * 210.00421 * 23 22 21 35 35 H 1.08998 * 109.46754 * 330.00226 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0940 2.5798 -0.0006 5 6 1.2734 3.8847 -0.0011 6 6 2.5573 4.4258 0.0043 7 6 2.7534 5.8946 0.0096 8 6 1.6385 6.7413 0.0148 9 6 1.8257 8.1151 0.0203 10 6 3.1175 8.6095 0.0198 11 6 4.1974 7.7080 0.0144 12 6 5.5225 8.2003 0.0133 13 1 5.7030 9.2650 0.0162 14 6 6.6010 7.3074 0.0085 15 7 6.3824 6.0183 0.0044 16 14 8.3520 7.9580 0.0077 17 1 8.5743 8.7824 1.2226 18 1 9.3036 6.8179 0.0016 19 1 8.5701 8.7907 -1.2023 20 7 3.9796 6.3903 0.0152 21 6 3.6602 3.5624 -0.0011 22 6 3.4288 2.2020 -0.0005 23 6 4.5825 1.2325 -0.0009 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 0.4165 4.5421 -0.0021 28 1 0.6409 6.3277 0.0155 29 1 0.9794 8.7861 0.0249 30 1 3.2949 9.6749 0.0244 31 1 7.1295 5.3997 0.0007 32 1 4.6675 3.9519 -0.0011 33 1 4.8612 0.9990 1.0266 34 1 4.2877 0.3172 -0.5143 35 1 5.4329 1.6799 -0.5154 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243136161.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:52 Heat of formation + Delta-G solvation = 40.848864 kcal Electronic energy + Delta-G solvation = -19297.229314 eV Core-core repulsion = 16385.106088 eV Total energy + Delta-G solvation = -2912.123225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.22596 -39.78070 -35.66811 -34.71423 -34.01798 -32.35970 -30.85862 -29.73940 -28.35260 -27.52243 -25.22683 -23.96029 -22.91049 -21.78510 -19.38731 -18.93362 -17.67588 -17.31267 -16.59086 -16.20901 -15.86464 -15.71529 -15.69108 -14.74712 -14.63410 -14.39776 -14.18692 -14.14530 -13.91656 -13.60840 -13.47144 -13.08334 -12.88357 -12.84644 -12.71135 -12.63773 -12.26865 -11.81410 -11.46724 -11.42946 -11.01018 -10.62251 -10.36151 -10.06304 -9.56144 -9.46910 -8.35456 -8.31486 -6.52403 -0.35346 0.27239 0.56405 0.98893 1.21117 1.31116 1.41077 1.52135 1.54983 2.22426 2.62064 2.96593 3.49292 3.62835 3.91988 3.95242 4.04820 4.12294 4.32734 4.38251 4.40972 4.47642 4.72051 4.73337 4.73614 4.86625 4.89887 4.99505 5.11215 5.13901 5.26884 5.42035 5.45699 5.62193 5.70599 5.83417 6.14241 6.23977 6.68422 6.72620 6.93663 8.10081 8.43284 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.019941 B = 0.004829 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.770267 B = 5796.902187 C = 7180.217214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.059 6.059 3 C 0.090 3.910 4 N -0.491 5.491 5 C 0.115 3.885 6 C -0.091 4.091 7 C 0.157 3.843 8 C -0.298 4.298 9 C -0.056 4.056 10 C -0.292 4.292 11 C 0.223 3.777 12 C -0.468 4.468 13 H 0.088 0.912 14 C 0.029 3.971 15 N -0.751 5.751 16 Si 0.984 3.016 17 H -0.261 1.261 18 H -0.268 1.268 19 H -0.261 1.261 20 N -0.497 5.497 21 C -0.044 4.044 22 C -0.129 4.129 23 C -0.103 4.103 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.126 0.874 27 H 0.178 0.822 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.111 0.889 31 H 0.279 0.721 32 H 0.142 0.858 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.524 -10.363 -0.002 11.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.179 5.821 3 C -0.158 4.158 4 N -0.202 5.202 5 C -0.046 4.046 6 C -0.096 4.096 7 C 0.012 3.988 8 C -0.321 4.321 9 C -0.079 4.079 10 C -0.314 4.314 11 C 0.097 3.903 12 C -0.499 4.499 13 H 0.107 0.893 14 C -0.193 4.193 15 N -0.372 5.372 16 Si 0.805 3.195 17 H -0.185 1.185 18 H -0.192 1.192 19 H -0.185 1.185 20 N -0.211 5.211 21 C -0.071 4.071 22 C -0.137 4.137 23 C -0.160 4.160 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.144 0.856 27 H 0.195 0.805 28 H 0.149 0.851 29 H 0.156 0.844 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.160 0.840 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.856 -12.499 0.001 13.410 hybrid contribution 0.002 2.795 0.001 2.795 sum -4.854 -9.704 0.002 10.851 Atomic orbital electron populations 1.23500 0.92890 1.07259 1.06423 1.85305 1.09332 0.95939 1.91538 1.23356 0.91394 0.99987 1.01107 1.67963 1.32923 1.03728 1.15622 1.22963 0.95863 0.90834 0.94908 1.19852 0.94826 0.92499 1.02467 1.20082 0.90757 0.92178 0.95734 1.21605 0.98372 0.94047 1.18117 1.21221 0.96444 0.95138 0.95132 1.22027 0.93922 0.99471 1.16016 1.18986 0.94256 0.87677 0.89395 1.19928 0.90113 0.95035 1.44855 0.89349 1.26878 1.05259 0.94678 0.92503 1.70145 1.34213 1.03527 1.29360 0.85233 0.75572 0.78845 0.79887 1.18535 1.19192 1.18540 1.68692 1.20037 1.14353 1.17972 1.21888 1.00656 0.91924 0.92648 1.20743 0.95465 0.94850 1.02616 1.20742 0.94521 0.97147 1.03623 0.89911 0.89917 0.85554 0.80507 0.85067 0.84380 0.87054 0.91019 0.83988 0.89655 0.89607 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.63 113.37 1.09 -1.45 16 2 S -0.06 -1.45 20.91 -56.49 -1.18 -2.63 16 3 C 0.09 2.94 6.97 84.84 0.59 3.54 16 4 N -0.49 -16.75 9.10 -191.17 -1.74 -18.49 16 5 C 0.12 4.19 10.58 84.97 0.90 5.09 16 6 C -0.09 -3.91 5.89 -19.93 -0.12 -4.03 16 7 C 0.16 7.61 6.74 42.15 0.28 7.90 16 8 C -0.30 -12.82 9.48 22.79 0.22 -12.60 16 9 C -0.06 -2.36 10.15 22.39 0.23 -2.13 16 10 C -0.29 -14.13 9.83 22.89 0.22 -13.91 16 11 C 0.22 12.25 6.55 40.25 0.26 12.51 16 12 C -0.47 -25.09 9.14 23.47 0.21 -24.87 16 13 H 0.09 4.42 7.85 -2.91 -0.02 4.40 16 14 C 0.03 1.44 5.50 85.28 0.47 1.91 16 15 N -0.75 -38.96 11.18 21.83 0.24 -38.71 16 16 Si 0.98 37.46 29.56 68.60 2.03 39.49 16 17 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 18 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 19 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 20 N -0.50 -27.29 6.99 -178.22 -1.25 -28.53 16 21 C -0.04 -1.83 9.35 22.66 0.21 -1.62 16 22 C -0.13 -4.50 5.91 -19.66 -0.12 -4.62 16 23 C -0.10 -2.82 9.58 71.24 0.68 -2.14 16 24 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 25 H 0.08 1.70 8.12 -2.39 -0.02 1.68 16 26 H 0.13 1.63 8.14 -2.39 -0.02 1.62 16 27 H 0.18 5.53 6.17 -2.91 -0.02 5.51 16 28 H 0.13 4.63 6.19 -2.91 -0.02 4.61 16 29 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 30 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 31 H 0.28 13.08 8.29 -92.71 -0.77 12.31 16 32 H 0.14 6.67 7.34 -2.91 -0.02 6.65 16 33 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.09 2.04 6.79 -2.38 -0.02 2.02 16 35 H 0.07 2.02 8.09 -2.39 -0.02 2.00 16 Total: -1.00 -62.38 313.73 4.36 -58.02 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 1.11 Total: 27.27 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 5.14 Total: -36.42 kcal Atomic # 7 Polarization: -83.00 SS G_CDS: -2.74 Total: -85.74 kcal Atomic # 14 Polarization: 37.46 SS G_CDS: 2.03 Total: 39.49 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -1.18 Total: -2.63 kcal Total: -62.38 4.36 -58.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243136161.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.872 kcal (2) G-P(sol) polarization free energy of solvation -62.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds