Wall clock time and date at job start Tue Mar 31 2020 06:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76203 * 102.99863 * 2 1 4 4 N 1.32567 * 119.57785 * 0.27153 * 3 2 1 5 5 C 1.31734 * 121.74208 * 180.31289 * 4 3 2 6 6 C 1.39265 * 120.68998 * 359.69884 * 5 4 3 7 7 C 1.48263 * 120.45280 * 179.97438 * 6 5 4 8 8 C 1.38970 * 119.62110 * 359.74604 * 7 6 5 9 9 C 1.40820 * 118.75348 * 179.77749 * 8 7 6 10 10 C 1.41532 * 120.97896 * 180.26423 * 9 8 7 11 11 H 1.07999 * 119.99867 * 203.50378 * 10 9 8 12 12 C 1.40040 * 120.00055 * 23.50337 * 10 9 8 13 13 N 1.30732 * 120.00438 * 17.04203 * 12 10 9 14 14 Si 1.86805 * 120.00055 * 197.04216 * 12 10 9 15 15 H 1.48507 * 109.46845 * 59.99575 * 14 12 10 16 16 H 1.48489 * 109.47247 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.47173 * 300.00167 * 14 12 10 18 18 C 1.41159 * 118.03674 * 0.48809 * 9 8 7 19 19 C 1.37709 * 119.08588 * 359.75429 * 18 9 8 20 20 N 1.31943 * 121.16348 * 359.97438 * 19 18 9 21 21 C 1.40018 * 119.09093 * 0.02562 * 6 5 4 22 22 C 1.38024 * 118.40753 * 0.02562 * 21 6 5 23 23 C 1.50704 * 120.38849 * 180.02562 * 22 21 6 24 24 H 1.09001 * 109.46688 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47490 * 300.00244 * 1 2 3 26 26 H 1.09003 * 109.46627 * 60.00298 * 1 2 3 27 27 H 1.08004 * 119.66038 * 179.72216 * 5 4 3 28 28 H 1.07993 * 120.62321 * 0.02562 * 8 7 6 29 29 H 0.97002 * 120.00428 * 179.97438 * 13 12 10 30 30 H 1.07995 * 120.46107 * 179.77274 * 18 9 8 31 31 H 1.08001 * 119.42119 * 180.02562 * 19 18 9 32 32 H 1.08001 * 120.79155 * 180.02562 * 21 6 5 33 33 H 1.09000 * 109.46819 * 89.99791 * 23 22 21 34 34 H 1.08992 * 109.46797 * 329.99999 * 23 22 21 35 35 H 1.08997 * 109.47165 * 209.99592 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 7 1.2342 2.6138 0.0055 5 6 1.4818 3.9076 -0.0004 6 6 2.7916 4.3807 -0.0064 7 6 3.0642 5.8380 -0.0136 8 6 2.0031 6.7353 -0.0197 9 6 2.2829 8.1154 -0.0216 10 6 1.2384 9.0705 -0.0222 11 1 1.4185 10.0674 -0.3966 12 6 -0.0285 8.7229 0.4627 13 7 -0.1735 7.6602 1.2101 14 14 -1.5115 9.7779 0.0417 15 1 -1.6894 9.8160 -1.4322 16 1 -2.7254 9.1994 0.6716 17 1 -1.2986 11.1568 0.5503 18 6 3.6358 8.5181 -0.0279 19 6 4.6207 7.5556 -0.0267 20 7 4.3200 6.2709 -0.0192 21 6 3.8475 3.4611 -0.0067 22 6 3.5454 2.1144 -0.0015 23 6 4.6470 1.0859 -0.0009 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.6604 4.6090 -0.0002 28 1 0.9830 6.3809 -0.0188 29 1 -1.0510 7.4196 1.5463 30 1 3.8950 9.5664 -0.0333 31 1 5.6577 7.8576 -0.0310 32 1 4.8738 3.7976 -0.0108 33 1 4.9152 0.8414 1.0269 34 1 5.5185 1.4869 -0.5183 35 1 4.3039 0.1858 -0.5108 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243142929.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:56 Heat of formation + Delta-G solvation = 42.600368 kcal Electronic energy + Delta-G solvation = -19138.232450 eV Core-core repulsion = 16226.185176 eV Total energy + Delta-G solvation = -2912.047274 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83704 -38.18548 -34.30827 -33.46046 -32.58788 -30.69160 -28.93135 -28.60802 -27.07317 -26.04452 -23.62609 -22.73304 -21.27430 -20.24295 -17.71641 -17.57309 -16.31721 -15.62267 -15.09557 -14.75602 -14.42128 -14.37169 -14.13314 -13.51478 -13.33819 -13.22885 -12.85009 -12.80664 -12.67369 -12.34468 -12.30193 -12.13998 -11.61384 -11.51761 -11.25362 -10.99595 -10.41469 -10.27757 -10.10941 -9.82641 -9.48280 -9.21248 -9.08241 -8.20588 -8.12536 -7.89593 -7.05828 -6.92674 -4.72352 1.11344 1.62858 1.66079 2.39751 2.68804 2.74635 2.96004 2.97776 3.15619 3.76335 4.08277 4.58429 4.83992 5.01553 5.15577 5.26259 5.27273 5.33949 5.50829 5.54575 5.65706 5.71568 5.84687 5.87921 6.05851 6.19977 6.41484 6.56440 6.62121 6.79273 6.84236 6.95413 7.05243 7.20925 7.30477 7.70208 7.94122 8.11472 8.30283 8.57807 8.60812 9.41594 9.93725 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018279 B = 0.004709 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.418840 B = 5944.407975 C = 7388.196793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.093 6.093 3 C 0.099 3.901 4 N -0.487 5.487 5 C 0.117 3.883 6 C -0.054 4.054 7 C 0.137 3.863 8 C -0.187 4.187 9 C 0.125 3.875 10 C -0.452 4.452 11 H 0.084 0.916 12 C 0.078 3.922 13 N -0.784 5.784 14 Si 0.913 3.087 15 H -0.261 1.261 16 H -0.276 1.276 17 H -0.263 1.263 18 C -0.271 4.271 19 C 0.106 3.894 20 N -0.566 5.566 21 C -0.042 4.042 22 C -0.122 4.122 23 C -0.106 4.106 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.166 0.834 28 H 0.132 0.868 29 H 0.286 0.714 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.025 -10.267 -1.573 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.144 5.856 3 C -0.149 4.149 4 N -0.198 5.198 5 C -0.044 4.044 6 C -0.060 4.060 7 C 0.006 3.994 8 C -0.209 4.209 9 C 0.117 3.883 10 C -0.483 4.483 11 H 0.102 0.898 12 C -0.142 4.142 13 N -0.409 5.409 14 Si 0.737 3.263 15 H -0.186 1.186 16 H -0.201 1.201 17 H -0.187 1.187 18 C -0.294 4.294 19 C -0.049 4.049 20 N -0.282 5.282 21 C -0.069 4.069 22 C -0.130 4.130 23 C -0.164 4.164 24 H 0.115 0.885 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.183 0.817 28 H 0.150 0.850 29 H 0.098 0.902 30 H 0.121 0.879 31 H 0.141 0.859 32 H 0.165 0.835 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.281 -12.376 -1.421 12.523 hybrid contribution -1.454 2.762 -0.016 3.121 sum -0.173 -9.615 -1.437 9.723 Atomic orbital electron populations 1.23419 0.94487 1.05397 1.06684 1.85116 1.07260 1.00684 1.92491 1.22721 0.91619 0.97614 1.02957 1.67921 1.34366 1.02689 1.14817 1.22931 0.96096 0.90759 0.94622 1.19758 0.93581 0.93346 0.99281 1.19038 0.90016 0.90257 1.00049 1.22256 0.98742 0.93314 1.06634 1.17759 0.91833 0.92288 0.86379 1.19614 0.93649 0.98934 1.36101 0.89825 1.25996 1.00742 0.95320 0.92179 1.69731 1.26131 1.23041 1.21979 0.86273 0.79308 0.80568 0.80169 1.18562 1.20050 1.18750 1.21922 0.93898 0.98700 1.14912 1.21810 0.97807 0.88440 0.96889 1.67243 1.20478 1.17582 1.22849 1.21545 1.00555 0.90475 0.94351 1.20346 0.93672 0.95428 1.03574 1.20691 0.96114 0.96963 1.02618 0.88466 0.89614 0.89692 0.81704 0.85042 0.90237 0.87897 0.85862 0.83548 0.90860 0.91047 0.91067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.51 10.01 101.05 1.01 -0.50 16 2 S -0.09 -1.26 20.75 -107.50 -2.23 -3.49 16 3 C 0.10 1.69 7.00 -16.84 -0.12 1.57 16 4 N -0.49 -9.09 9.40 -11.80 -0.11 -9.20 16 5 C 0.12 2.34 10.58 -17.21 -0.18 2.16 16 6 C -0.05 -1.14 5.89 -104.73 -0.62 -1.75 16 7 C 0.14 3.23 6.73 -83.04 -0.56 2.67 16 8 C -0.19 -4.65 8.15 -38.33 -0.31 -4.96 16 9 C 0.13 3.19 5.61 -106.56 -0.60 2.60 16 10 C -0.45 -11.29 9.12 -37.65 -0.34 -11.63 16 11 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 12 C 0.08 1.83 5.20 -17.34 -0.09 1.74 16 13 N -0.78 -18.95 10.91 55.55 0.61 -18.35 16 14 Si 0.91 17.53 29.59 -169.99 -5.03 12.50 16 15 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 16 H -0.28 -5.17 7.11 56.52 0.40 -4.77 16 17 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 18 C -0.27 -6.36 9.90 -38.67 -0.38 -6.74 16 19 C 0.11 2.35 11.15 -17.70 -0.20 2.16 16 20 N -0.57 -13.17 9.47 -9.95 -0.09 -13.26 16 21 C -0.04 -0.77 9.35 -38.99 -0.36 -1.14 16 22 C -0.12 -2.00 5.91 -104.31 -0.62 -2.62 16 23 C -0.11 -1.33 9.59 36.01 0.35 -0.98 16 24 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 27 H 0.17 3.31 6.18 -52.48 -0.32 2.98 16 28 H 0.13 3.26 4.33 -52.49 -0.23 3.03 16 29 H 0.29 6.31 8.29 -40.82 -0.34 5.97 16 30 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 31 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 32 H 0.15 2.60 7.62 -52.49 -0.40 2.20 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 35 H 0.07 0.83 6.78 -51.93 -0.35 0.48 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -27.16 313.51 -8.97 -36.13 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -3.81 Total: 8.38 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -3.02 Total: -17.43 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: 0.40 Total: -40.80 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Atomic # 16 Polarization: -1.26 SS G_CDS: -2.23 Total: -3.49 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.16 -8.97 -36.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243142929.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.730 kcal (2) G-P(sol) polarization free energy of solvation -27.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds