Wall clock time and date at job start Tue Mar 31 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76207 * 99.99931 * 2 1 4 4 N 1.32664 * 119.53896 * 359.97438 * 3 2 1 5 5 C 1.31684 * 121.62569 * 180.02562 * 4 3 2 6 6 C 1.39658 * 120.51234 * 359.97438 * 5 4 3 7 7 C 1.47795 * 120.47117 * 180.02562 * 6 5 4 8 8 C 1.40369 * 120.35380 * 0.02562 * 7 6 5 9 9 C 1.36593 * 118.60512 * 180.02562 * 8 7 6 10 10 C 1.40924 * 119.26682 * 359.97438 * 9 8 7 11 11 C 1.40897 * 119.67528 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99645 * 0.02562 * 11 10 9 13 13 C 1.40039 * 120.00087 * 179.97438 * 11 10 9 14 14 N 1.30751 * 120.00054 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00180 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47004 * 60.00437 * 15 13 11 17 17 H 1.48500 * 109.47256 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46954 * 300.00559 * 15 13 11 19 19 N 1.33816 * 120.65270 * 359.97438 * 10 9 8 20 20 C 1.31166 * 121.50284 * 359.70117 * 19 10 9 21 21 C 1.40298 * 119.05733 * 359.73845 * 6 5 4 22 22 C 1.36895 * 118.50039 * 0.52558 * 21 6 5 23 23 C 1.50703 * 120.30920 * 179.74386 * 22 21 6 24 24 H 1.09004 * 109.47373 * 300.00311 * 1 2 3 25 25 H 1.09005 * 109.47456 * 59.99860 * 1 2 3 26 26 H 1.08998 * 109.47181 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.74552 * 179.97438 * 5 4 3 28 28 H 1.08008 * 120.69822 * 359.97438 * 8 7 6 29 29 H 1.08003 * 120.36651 * 179.97438 * 9 8 7 30 30 H 0.97006 * 119.99814 * 179.97438 * 14 13 11 31 31 H 1.08001 * 119.65887 * 180.30681 * 20 19 10 32 32 H 1.08002 * 120.75127 * 180.29336 * 21 6 5 33 33 H 1.09002 * 109.47152 * 269.72454 * 23 22 21 34 34 H 1.09001 * 109.46980 * 149.72555 * 23 22 21 35 35 H 1.09004 * 109.47113 * 29.72536 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0928 2.5798 -0.0005 5 6 1.2741 3.8841 -0.0010 6 6 2.5634 4.4208 -0.0005 7 6 2.7659 5.8848 -0.0005 8 6 1.6631 6.7534 -0.0005 9 6 1.8914 8.1001 -0.0011 10 6 3.2186 8.5739 -0.0011 11 6 3.4640 9.9614 -0.0011 12 1 2.6369 10.6559 -0.0007 13 6 4.7801 10.4397 -0.0006 14 7 5.7813 9.5988 -0.0006 15 14 5.1054 12.2791 0.0001 16 1 4.5021 12.8881 1.2127 17 1 6.5703 12.5228 0.0000 18 1 4.5025 12.8889 -1.2123 19 7 4.2482 7.7191 -0.0001 20 6 4.0612 6.4209 0.0068 21 6 3.6638 3.5505 0.0062 22 6 3.4299 2.2017 0.0009 23 6 4.5818 1.2300 0.0019 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.4191 4.5439 -0.0019 28 1 0.6553 6.3650 -0.0009 29 1 1.0639 8.7941 -0.0015 30 1 6.6930 9.9301 -0.0006 31 1 4.9139 5.7581 0.0125 32 1 4.6727 3.9359 0.0115 33 1 4.8600 0.9953 -1.0255 34 1 4.2853 0.3156 0.5160 35 1 5.4331 1.6762 0.5161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243146962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:12 Heat of formation + Delta-G solvation = 51.224014 kcal Electronic energy + Delta-G solvation = -18844.649655 eV Core-core repulsion = 15932.976330 eV Total energy + Delta-G solvation = -2911.673325 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.78460 -38.16512 -34.19728 -33.49247 -32.44609 -30.81552 -29.29587 -28.76217 -26.96665 -25.90506 -23.61882 -22.46429 -21.22520 -20.31684 -17.95986 -17.55697 -16.22313 -15.80198 -15.34878 -14.72017 -14.38838 -14.36941 -14.02635 -13.52346 -13.30935 -13.22626 -12.74797 -12.67657 -12.51335 -12.30020 -12.13628 -12.07205 -11.81683 -11.39352 -11.20936 -10.99787 -10.66069 -10.28781 -10.15540 -10.09253 -9.37870 -9.26143 -9.09080 -8.47915 -7.92480 -7.78915 -6.99266 -6.70078 -4.74451 1.19776 1.68244 1.82777 2.39960 2.63290 2.92403 2.92812 2.94508 3.05163 3.71825 4.15209 4.58739 4.85010 5.12881 5.17851 5.29277 5.32983 5.39485 5.68183 5.69410 5.72508 5.76140 5.82182 5.87122 5.92768 6.03162 6.23702 6.44614 6.52980 6.60145 6.77113 6.81440 7.03860 7.15159 7.38956 7.53439 7.77028 7.92630 8.19484 8.32935 8.62490 9.83087 9.98908 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.042599 B = 0.003285 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.139022 B = 8520.543026 C = 9157.232190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.098 6.098 3 C 0.062 3.938 4 N -0.473 5.473 5 C 0.067 3.933 6 C -0.003 4.003 7 C -0.280 4.280 8 C -0.033 4.033 9 C -0.269 4.269 10 C 0.249 3.751 11 C -0.398 4.398 12 H 0.090 0.910 13 C 0.060 3.940 14 N -0.694 5.694 15 Si 0.914 3.086 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.262 1.262 19 N -0.488 5.488 20 C 0.163 3.837 21 C -0.102 4.102 22 C -0.095 4.095 23 C -0.110 4.110 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.152 0.848 28 H 0.100 0.900 29 H 0.103 0.897 30 H 0.280 0.720 31 H 0.123 0.877 32 H 0.135 0.865 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 -10.408 0.009 10.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.139 5.861 3 C -0.186 4.186 4 N -0.183 5.183 5 C -0.094 4.094 6 C -0.009 4.009 7 C -0.286 4.286 8 C -0.056 4.056 9 C -0.291 4.291 10 C 0.127 3.873 11 C -0.427 4.427 12 H 0.108 0.892 13 C -0.168 4.168 14 N -0.313 5.313 15 Si 0.738 3.262 16 H -0.186 1.186 17 H -0.199 1.199 18 H -0.186 1.186 19 N -0.199 5.199 20 C -0.007 4.007 21 C -0.128 4.128 22 C -0.103 4.103 23 C -0.168 4.168 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.110 0.890 27 H 0.169 0.831 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.152 0.848 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.098 -11.355 0.006 11.547 hybrid contribution -0.836 1.932 -0.003 2.105 sum -2.934 -9.423 0.003 9.869 Atomic orbital electron populations 1.23321 0.94939 1.05023 1.06574 1.85254 1.07213 1.00479 1.93200 1.22445 0.91319 0.97333 1.07477 1.67717 1.33110 1.04403 1.13065 1.22648 0.96343 0.90002 1.00447 1.19813 0.93083 0.94075 0.93889 1.18877 0.95299 0.89722 1.24730 1.20638 0.96404 0.93371 0.95211 1.21429 0.97698 0.94776 1.15186 1.18680 0.86971 0.93606 0.88015 1.19821 0.93155 0.91297 1.38377 0.89214 1.26234 0.96095 1.00677 0.93776 1.70121 0.99982 1.36210 1.25013 0.86256 0.78380 0.81381 0.80231 1.18595 1.19862 1.18598 1.68819 1.32592 1.00717 1.17814 1.22775 0.93412 0.93087 0.91464 1.21139 0.99495 0.91524 1.00661 1.20016 0.93936 0.95087 1.01227 1.20737 0.95642 0.97789 1.02586 0.89790 0.89769 0.88985 0.83070 0.88187 0.87920 0.90885 0.85976 0.84758 0.90865 0.91118 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.48 9.63 101.05 0.97 -0.51 16 2 S -0.10 -1.32 20.90 -107.50 -2.25 -3.57 16 3 C 0.06 1.04 6.97 -16.75 -0.12 0.92 16 4 N -0.47 -8.33 9.10 -11.66 -0.11 -8.44 16 5 C 0.07 1.21 10.62 -17.09 -0.18 1.03 16 6 C 0.00 -0.07 5.90 -104.68 -0.62 -0.68 16 7 C -0.28 -5.99 5.92 -104.46 -0.62 -6.61 16 8 C -0.03 -0.70 9.47 -39.37 -0.37 -1.08 16 9 C -0.27 -6.16 9.76 -39.16 -0.38 -6.54 16 10 C 0.25 6.40 6.55 -84.98 -0.56 5.84 16 11 C -0.40 -9.84 9.11 -37.90 -0.35 -10.18 16 12 H 0.09 2.03 7.85 -52.49 -0.41 1.62 16 13 C 0.06 1.42 5.50 -17.34 -0.10 1.32 16 14 N -0.69 -17.17 11.44 55.55 0.64 -16.53 16 15 Si 0.91 17.07 29.56 -169.99 -5.02 12.05 16 16 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 17 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 18 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 19 N -0.49 -12.69 7.83 -10.83 -0.08 -12.77 16 20 C 0.16 3.75 10.62 -17.10 -0.18 3.57 16 21 C -0.10 -1.76 9.15 -39.29 -0.36 -2.12 16 22 C -0.10 -1.52 5.88 -104.67 -0.62 -2.14 16 23 C -0.11 -1.37 9.58 36.01 0.34 -1.03 16 24 H 0.08 1.01 8.12 -51.91 -0.42 0.59 16 25 H 0.08 1.01 8.12 -51.91 -0.42 0.59 16 26 H 0.09 0.81 8.14 -51.92 -0.42 0.38 16 27 H 0.15 2.50 6.26 -52.49 -0.33 2.17 16 28 H 0.10 1.81 6.32 -52.48 -0.33 1.48 16 29 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 30 H 0.28 6.22 8.29 -40.82 -0.34 5.88 16 31 H 0.12 2.50 6.27 -52.49 -0.33 2.17 16 32 H 0.13 2.13 6.32 -52.49 -0.33 1.80 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.83 6.78 -51.93 -0.35 0.48 16 35 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 LS Contribution 311.55 15.07 4.69 4.69 Total: -1.00 -27.53 311.55 -9.01 -36.54 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -3.75 Total: 6.25 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -3.12 Total: -18.21 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.44 Total: -37.74 kcal Atomic # 14 Polarization: 17.07 SS G_CDS: -5.02 Total: 12.05 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.25 Total: -3.57 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.53 -9.01 -36.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243146962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.759 kcal (2) G-P(sol) polarization free energy of solvation -27.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds