Wall clock time and date at job start Tue Mar 31 2020 06:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76207 * 99.99931 * 2 1 4 4 N 1.32664 * 119.53896 * 359.97438 * 3 2 1 5 5 C 1.31684 * 121.62569 * 180.02562 * 4 3 2 6 6 C 1.39658 * 120.51234 * 359.97438 * 5 4 3 7 7 C 1.47795 * 120.47117 * 180.02562 * 6 5 4 8 8 C 1.40369 * 120.35380 * 0.02562 * 7 6 5 9 9 C 1.36593 * 118.60512 * 180.02562 * 8 7 6 10 10 C 1.40924 * 119.26682 * 359.97438 * 9 8 7 11 11 C 1.40897 * 119.67528 * 180.02562 * 10 9 8 12 12 H 1.08000 * 119.99645 * 0.02562 * 11 10 9 13 13 C 1.40039 * 120.00087 * 179.97438 * 11 10 9 14 14 N 1.30751 * 120.00054 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00180 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47004 * 60.00437 * 15 13 11 17 17 H 1.48500 * 109.47256 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46954 * 300.00559 * 15 13 11 19 19 N 1.33816 * 120.65270 * 359.97438 * 10 9 8 20 20 C 1.31166 * 121.50284 * 359.70117 * 19 10 9 21 21 C 1.40298 * 119.05733 * 359.73845 * 6 5 4 22 22 C 1.36895 * 118.50039 * 0.52558 * 21 6 5 23 23 C 1.50703 * 120.30920 * 179.74386 * 22 21 6 24 24 H 1.09004 * 109.47373 * 300.00311 * 1 2 3 25 25 H 1.09005 * 109.47456 * 59.99860 * 1 2 3 26 26 H 1.08998 * 109.47181 * 180.02562 * 1 2 3 27 27 H 1.07997 * 119.74552 * 179.97438 * 5 4 3 28 28 H 1.08008 * 120.69822 * 359.97438 * 8 7 6 29 29 H 1.08003 * 120.36651 * 179.97438 * 9 8 7 30 30 H 0.97006 * 119.99814 * 179.97438 * 14 13 11 31 31 H 1.08001 * 119.65887 * 180.30681 * 20 19 10 32 32 H 1.08002 * 120.75127 * 180.29336 * 21 6 5 33 33 H 1.09002 * 109.47152 * 269.72454 * 23 22 21 34 34 H 1.09001 * 109.46980 * 149.72555 * 23 22 21 35 35 H 1.09004 * 109.47113 * 29.72536 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0928 2.5798 -0.0005 5 6 1.2741 3.8841 -0.0010 6 6 2.5634 4.4208 -0.0005 7 6 2.7659 5.8848 -0.0005 8 6 1.6631 6.7534 -0.0005 9 6 1.8914 8.1001 -0.0011 10 6 3.2186 8.5739 -0.0011 11 6 3.4640 9.9614 -0.0011 12 1 2.6369 10.6559 -0.0007 13 6 4.7801 10.4397 -0.0006 14 7 5.7813 9.5988 -0.0006 15 14 5.1054 12.2791 0.0001 16 1 4.5021 12.8881 1.2127 17 1 6.5703 12.5228 0.0000 18 1 4.5025 12.8889 -1.2123 19 7 4.2482 7.7191 -0.0001 20 6 4.0612 6.4209 0.0068 21 6 3.6638 3.5505 0.0062 22 6 3.4299 2.2017 0.0009 23 6 4.5818 1.2300 0.0019 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 0.4191 4.5439 -0.0019 28 1 0.6553 6.3650 -0.0009 29 1 1.0639 8.7941 -0.0015 30 1 6.6930 9.9301 -0.0006 31 1 4.9139 5.7581 0.0125 32 1 4.6727 3.9359 0.0115 33 1 4.8600 0.9953 -1.0255 34 1 4.2853 0.3156 0.5160 35 1 5.4331 1.6762 0.5161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243146962.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:12 Heat of formation + Delta-G solvation = 37.558616 kcal Electronic energy + Delta-G solvation = -18845.242231 eV Core-core repulsion = 15932.976330 eV Total energy + Delta-G solvation = -2912.265901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.20310 -39.85639 -35.87278 -34.75110 -34.02422 -32.55472 -30.86141 -29.78494 -28.14051 -27.56957 -25.11659 -24.05435 -22.82635 -21.84557 -19.58933 -18.93469 -17.71739 -17.34445 -16.83491 -16.13975 -15.79351 -15.70478 -15.62147 -14.71966 -14.64441 -14.36609 -14.24965 -14.17732 -13.79041 -13.61626 -13.55661 -13.21608 -13.02495 -12.90373 -12.77639 -12.64719 -12.16620 -11.82593 -11.62841 -11.38346 -10.97606 -10.64061 -10.36586 -10.21179 -9.54954 -9.47486 -8.41106 -8.32064 -6.53769 -0.25350 0.32547 0.66765 0.97756 1.20207 1.34160 1.39967 1.52835 1.55753 2.17797 2.63326 2.96729 3.55656 3.85021 3.89151 4.00298 4.00665 4.18447 4.27390 4.32501 4.36298 4.40851 4.55539 4.69161 4.77177 4.83251 4.87522 4.97602 5.08807 5.15775 5.21947 5.29284 5.41329 5.61658 5.72191 5.87183 6.03157 6.17250 6.59112 6.79908 6.85383 8.07195 8.30811 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.042599 B = 0.003285 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.139022 B = 8520.543026 C = 9157.232190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.072 6.072 3 C 0.056 3.944 4 N -0.483 5.483 5 C 0.068 3.932 6 C -0.032 4.032 7 C -0.268 4.268 8 C -0.037 4.037 9 C -0.284 4.284 10 C 0.218 3.782 11 C -0.440 4.440 12 H 0.098 0.902 13 C 0.019 3.981 14 N -0.739 5.739 15 Si 0.992 3.008 16 H -0.257 1.257 17 H -0.267 1.267 18 H -0.257 1.257 19 N -0.522 5.522 20 C 0.139 3.861 21 C -0.099 4.099 22 C -0.103 4.103 23 C -0.108 4.108 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.163 0.837 28 H 0.132 0.868 29 H 0.116 0.884 30 H 0.285 0.715 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.662 -12.441 -0.002 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.165 5.835 3 C -0.192 4.192 4 N -0.194 5.194 5 C -0.093 4.093 6 C -0.037 4.037 7 C -0.274 4.274 8 C -0.060 4.060 9 C -0.307 4.307 10 C 0.096 3.904 11 C -0.470 4.470 12 H 0.116 0.884 13 C -0.205 4.205 14 N -0.360 5.360 15 Si 0.811 3.189 16 H -0.181 1.181 17 H -0.191 1.191 18 H -0.181 1.181 19 N -0.234 5.234 20 C -0.029 4.029 21 C -0.126 4.126 22 C -0.110 4.110 23 C -0.165 4.165 24 H 0.097 0.903 25 H 0.098 0.902 26 H 0.142 0.858 27 H 0.180 0.820 28 H 0.149 0.851 29 H 0.134 0.866 30 H 0.095 0.905 31 H 0.155 0.845 32 H 0.161 0.839 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.778 -13.438 -0.004 13.722 hybrid contribution -0.770 2.068 -0.001 2.206 sum -3.548 -11.370 -0.005 11.911 Atomic orbital electron populations 1.23435 0.93352 1.06979 1.06075 1.85202 1.08919 0.97067 1.92312 1.23186 0.91629 0.99345 1.05044 1.67832 1.33517 1.04159 1.13886 1.22837 0.96292 0.90623 0.99520 1.19765 0.94337 0.92917 0.96727 1.19109 0.94738 0.91267 1.22262 1.20988 0.97950 0.92775 0.94259 1.21620 0.97258 0.95984 1.15791 1.19128 0.88057 0.94375 0.88890 1.20155 0.94388 0.91516 1.40902 0.88433 1.27135 0.95312 1.05426 0.92590 1.70211 1.00492 1.38452 1.26824 0.85114 0.78372 0.75127 0.80303 1.18058 1.19138 1.18067 1.68761 1.33605 1.01908 1.19127 1.23112 0.94888 0.92715 0.92151 1.21357 0.99549 0.92179 0.99496 1.20421 0.95106 0.95195 1.00310 1.20810 0.94660 0.97230 1.03785 0.90271 0.90249 0.85825 0.81957 0.85070 0.86564 0.90459 0.84462 0.83903 0.89495 0.90193 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.55 9.63 113.37 1.09 -1.45 16 2 S -0.07 -1.71 20.90 -56.49 -1.18 -2.89 16 3 C 0.06 1.73 6.97 84.85 0.59 2.32 16 4 N -0.48 -16.05 9.10 -190.79 -1.74 -17.78 16 5 C 0.07 2.35 10.62 85.06 0.90 3.25 16 6 C -0.03 -1.20 5.90 -19.91 -0.12 -1.32 16 7 C -0.27 -11.52 5.92 -19.76 -0.12 -11.64 16 8 C -0.04 -1.55 9.47 22.40 0.21 -1.34 16 9 C -0.28 -13.37 9.76 22.54 0.22 -13.15 16 10 C 0.22 11.68 6.55 40.15 0.26 11.94 16 11 C -0.44 -22.71 9.11 23.36 0.21 -22.50 16 12 H 0.10 4.61 7.85 -2.91 -0.02 4.58 16 13 C 0.02 0.93 5.50 85.29 0.47 1.40 16 14 N -0.74 -38.16 11.44 21.84 0.25 -37.91 16 15 Si 0.99 35.77 29.56 68.60 2.03 37.79 16 16 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 17 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 18 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 19 N -0.52 -28.32 7.83 -188.18 -1.47 -29.79 16 20 C 0.14 6.59 10.62 85.27 0.91 7.50 16 21 C -0.10 -3.31 9.15 22.46 0.21 -3.10 16 22 C -0.10 -3.06 5.88 -19.89 -0.12 -3.17 16 23 C -0.11 -2.35 9.58 71.24 0.68 -1.67 16 24 H 0.08 1.67 8.12 -2.39 -0.02 1.66 16 25 H 0.08 1.68 8.12 -2.39 -0.02 1.66 16 26 H 0.12 1.66 8.14 -2.40 -0.02 1.64 16 27 H 0.16 5.10 6.26 -2.91 -0.02 5.08 16 28 H 0.13 4.59 6.32 -2.91 -0.02 4.58 16 29 H 0.12 4.95 8.06 -2.91 -0.02 4.93 16 30 H 0.28 13.18 8.29 -92.70 -0.77 12.41 16 31 H 0.14 5.77 6.27 -2.91 -0.02 5.76 16 32 H 0.14 4.41 6.32 -2.91 -0.02 4.39 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.61 6.78 -2.39 -0.02 1.60 16 35 H 0.08 1.63 8.09 -2.38 -0.02 1.61 16 Total: -1.00 -61.26 311.55 4.41 -56.85 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 1.12 Total: 26.65 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 5.40 Total: -32.93 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -2.96 Total: -85.48 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.79 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -1.18 Total: -2.89 kcal Total: -61.26 4.41 -56.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243146962.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.409 kcal (2) G-P(sol) polarization free energy of solvation -61.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds