Wall clock time and date at job start Tue Mar 31 2020 06:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76196 * 103.00286 * 2 1 4 4 N 1.32563 * 119.57521 * 0.02562 * 3 2 1 5 5 C 1.31750 * 121.74097 * 179.97438 * 4 3 2 6 6 C 1.39246 * 120.68537 * 0.02562 * 5 4 3 7 7 C 1.48301 * 120.44885 * 179.97438 * 6 5 4 8 8 C 1.40083 * 120.82485 * 180.02562 * 7 6 5 9 9 C 1.38458 * 119.42081 * 180.02562 * 8 7 6 10 10 N 1.31506 * 121.15376 * 359.97438 * 9 8 7 11 11 C 1.33658 * 121.79887 * 0.02562 * 10 9 8 12 12 C 1.41435 * 119.77801 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00491 * 180.02562 * 12 11 10 14 14 C 1.40037 * 119.99820 * 359.72272 * 12 11 10 15 15 N 1.30744 * 119.99612 * 0.27902 * 14 12 11 16 16 Si 1.86794 * 119.99905 * 180.27348 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00557 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47794 * 300.00396 * 16 14 12 20 20 C 1.39376 * 120.82440 * 0.27855 * 7 6 5 21 21 C 1.40007 * 119.10245 * 0.24938 * 6 5 4 22 22 C 1.38026 * 118.40178 * 359.50606 * 21 6 5 23 23 C 1.50699 * 120.39056 * 180.24363 * 22 21 6 24 24 H 1.08997 * 109.46799 * 299.99757 * 1 2 3 25 25 H 1.09000 * 109.46878 * 59.99570 * 1 2 3 26 26 H 1.09001 * 109.47029 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.65394 * 180.02562 * 5 4 3 28 28 H 1.07999 * 120.28728 * 359.97438 * 8 7 6 29 29 H 1.07997 * 119.42563 * 180.02562 * 9 8 7 30 30 H 0.97000 * 119.99125 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.58655 * 0.02562 * 20 7 6 32 32 H 1.07996 * 120.79827 * 179.72496 * 21 6 5 33 33 H 1.08997 * 109.46913 * 270.25591 * 23 22 21 34 34 H 1.08999 * 109.47300 * 30.25082 * 23 22 21 35 35 H 1.08999 * 109.47811 * 150.25321 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 7 1.2343 2.6137 0.0005 5 6 1.4820 3.9077 0.0010 6 6 2.7918 4.3805 0.0005 7 6 3.0646 5.8382 0.0006 8 6 4.3791 6.3224 -0.0005 9 6 4.6003 7.6892 0.0001 10 7 3.5981 8.5407 0.0011 11 6 2.3259 8.1310 0.0021 12 6 1.2810 9.0841 0.0038 13 1 0.2517 8.7571 0.0050 14 6 1.5811 10.4520 0.0102 15 7 2.8271 10.8478 0.0091 16 14 0.2010 11.7108 0.0200 17 1 -0.6335 11.5210 1.2337 18 1 0.7790 13.0788 0.0251 19 1 -0.6395 11.5336 -1.1912 20 6 2.0195 6.7603 0.0069 21 6 3.8476 3.4611 -0.0059 22 6 3.5455 2.1143 -0.0010 23 6 4.6469 1.0858 -0.0020 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.6607 4.6090 0.0019 28 1 5.2126 5.6356 -0.0009 29 1 5.6137 8.0626 -0.0011 30 1 3.0349 11.7953 0.0132 31 1 0.9924 6.4268 0.0123 32 1 4.8738 3.7975 -0.0109 33 1 4.9120 0.8383 -1.0299 34 1 5.5202 1.4881 0.5115 35 1 4.3055 0.1871 0.5116 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243157458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:32 Heat of formation + Delta-G solvation = 53.987388 kcal Electronic energy + Delta-G solvation = -18856.826504 eV Core-core repulsion = 15945.273008 eV Total energy + Delta-G solvation = -2911.553496 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.01219 -38.07513 -33.99988 -33.65122 -32.84102 -30.15681 -29.26399 -28.81452 -27.24665 -25.83114 -23.82784 -22.84642 -20.99674 -20.48043 -17.93651 -17.43426 -16.46744 -15.73057 -15.26905 -14.62692 -14.57054 -14.39215 -13.99014 -13.54420 -13.45170 -13.34291 -13.03931 -12.80611 -12.66026 -12.31664 -12.27016 -12.21255 -11.69184 -11.26958 -11.19740 -10.86819 -10.56262 -10.41721 -10.24753 -9.98295 -9.36675 -9.35638 -9.26783 -8.27525 -7.76664 -7.67471 -7.20033 -6.48801 -4.62357 0.95786 1.42061 1.52371 2.27221 2.68128 2.90321 3.04377 3.06365 3.14130 3.88723 4.04227 4.65225 4.69691 4.90464 5.01364 5.11468 5.15894 5.19888 5.42794 5.48925 5.56999 5.69994 5.74406 5.81597 5.94823 6.06324 6.23443 6.31814 6.37305 6.58772 6.76109 6.85115 7.03736 7.20528 7.39603 7.55871 7.83276 7.97224 8.12704 8.55271 8.80729 10.01044 10.23185 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.003599 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.345290 B = 7777.694189 C = 8745.585845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.090 6.090 3 C 0.097 3.903 4 N -0.485 5.485 5 C 0.110 3.890 6 C -0.061 4.061 7 C 0.000 4.000 8 C -0.304 4.304 9 C 0.127 3.873 10 N -0.481 5.481 11 C 0.254 3.746 12 C -0.429 4.429 13 H 0.084 0.916 14 C 0.068 3.932 15 N -0.714 5.714 16 Si 0.909 3.091 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.251 4.251 21 C -0.062 4.062 22 C -0.114 4.114 23 C -0.109 4.109 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.098 0.902 27 H 0.163 0.837 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.274 0.726 31 H 0.103 0.897 32 H 0.141 0.859 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -14.682 -0.022 14.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.148 5.852 3 C -0.151 4.151 4 N -0.196 5.196 5 C -0.051 4.051 6 C -0.065 4.065 7 C -0.007 4.007 8 C -0.327 4.327 9 C -0.038 4.038 10 N -0.194 5.194 11 C 0.130 3.870 12 C -0.460 4.460 13 H 0.103 0.897 14 C -0.157 4.157 15 N -0.335 5.335 16 Si 0.732 3.268 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.189 1.189 20 C -0.274 4.274 21 C -0.088 4.088 22 C -0.122 4.122 23 C -0.166 4.166 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.180 0.820 28 H 0.115 0.885 29 H 0.138 0.862 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.159 0.841 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.169 -14.911 -0.020 14.912 hybrid contribution -0.732 1.166 0.006 1.377 sum -0.901 -13.745 -0.014 13.774 Atomic orbital electron populations 1.23431 0.94396 1.05540 1.06665 1.85171 1.07343 1.00354 1.92362 1.22737 0.91546 0.97754 1.03055 1.67895 1.34513 1.02786 1.14369 1.22878 0.96106 0.90763 0.95307 1.20021 0.93614 0.94476 0.98398 1.18417 0.94312 0.88833 0.99145 1.21301 0.94639 0.96671 1.20134 1.22460 0.98176 0.89262 0.93952 1.68743 0.98585 1.35466 1.16593 1.18531 0.90640 0.89323 0.88497 1.19624 0.93461 0.90224 1.42733 0.89739 1.26077 0.96307 0.99775 0.93572 1.70120 1.18630 1.16640 1.28067 0.86369 0.81350 0.79063 0.79976 1.18857 1.20145 1.18858 1.21857 0.96866 0.94275 1.14380 1.21525 1.00045 0.91024 0.96248 1.20326 0.93795 0.95313 1.02754 1.20718 0.96062 0.97061 1.02771 0.89642 0.89629 0.88342 0.82019 0.88503 0.86152 0.91426 0.87857 0.84108 0.90687 0.90979 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 10.01 101.05 1.01 -0.34 16 2 S -0.09 -1.11 20.76 -107.50 -2.23 -3.34 16 3 C 0.10 1.51 7.00 -16.84 -0.12 1.39 16 4 N -0.48 -8.19 9.40 -11.80 -0.11 -8.30 16 5 C 0.11 1.96 10.61 -17.21 -0.18 1.77 16 6 C -0.06 -1.13 5.89 -104.72 -0.62 -1.75 16 7 C 0.00 -0.01 5.91 -104.64 -0.62 -0.62 16 8 C -0.30 -6.51 9.53 -38.81 -0.37 -6.88 16 9 C 0.13 2.97 11.17 -17.61 -0.20 2.78 16 10 N -0.48 -12.96 7.85 -11.21 -0.09 -13.04 16 11 C 0.25 6.76 6.55 -85.02 -0.56 6.21 16 12 C -0.43 -11.18 9.14 -37.69 -0.34 -11.53 16 13 H 0.08 2.04 7.85 -52.49 -0.41 1.62 16 14 C 0.07 1.70 5.50 -17.34 -0.10 1.61 16 15 N -0.71 -18.64 11.46 55.55 0.64 -18.00 16 16 Si 0.91 18.17 29.56 -169.99 -5.02 13.14 16 17 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 18 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 20 C -0.25 -5.91 9.23 -38.33 -0.35 -6.26 16 21 C -0.06 -0.99 9.22 -39.00 -0.36 -1.35 16 22 C -0.11 -1.67 5.91 -104.31 -0.62 -2.29 16 23 C -0.11 -1.19 9.58 36.00 0.35 -0.85 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 26 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 27 H 0.16 2.73 6.30 -52.49 -0.33 2.40 16 28 H 0.10 1.78 6.38 -52.49 -0.33 1.44 16 29 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 30 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 31 H 0.10 2.21 6.35 -52.49 -0.33 1.88 16 32 H 0.14 2.04 6.39 -52.49 -0.34 1.71 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.07 0.76 6.79 -51.93 -0.35 0.41 16 LS Contribution 312.67 15.07 4.71 4.71 Total: -1.00 -29.00 312.67 -8.95 -37.94 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -3.77 Total: 5.01 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: -3.07 Total: -18.13 kcal Atomic # 7 Polarization: -39.78 SS G_CDS: 0.44 Total: -39.34 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.02 Total: 13.14 kcal Atomic # 16 Polarization: -1.11 SS G_CDS: -2.23 Total: -3.34 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.00 -8.95 -37.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243157458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.930 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds