Wall clock time and date at job start Tue Mar 31 2020 06:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76196 * 103.00286 * 2 1 4 4 N 1.32563 * 119.57521 * 0.02562 * 3 2 1 5 5 C 1.31750 * 121.74097 * 179.97438 * 4 3 2 6 6 C 1.39246 * 120.68537 * 0.02562 * 5 4 3 7 7 C 1.48301 * 120.44885 * 179.97438 * 6 5 4 8 8 C 1.40083 * 120.82485 * 180.02562 * 7 6 5 9 9 C 1.38458 * 119.42081 * 180.02562 * 8 7 6 10 10 N 1.31506 * 121.15376 * 359.97438 * 9 8 7 11 11 C 1.33658 * 121.79887 * 0.02562 * 10 9 8 12 12 C 1.41435 * 119.77801 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00491 * 180.02562 * 12 11 10 14 14 C 1.40037 * 119.99820 * 359.72272 * 12 11 10 15 15 N 1.30744 * 119.99612 * 0.27902 * 14 12 11 16 16 Si 1.86794 * 119.99905 * 180.27348 * 14 12 11 17 17 H 1.48504 * 109.47196 * 60.00557 * 16 14 12 18 18 H 1.48504 * 109.46887 * 180.02562 * 16 14 12 19 19 H 1.48494 * 109.47794 * 300.00396 * 16 14 12 20 20 C 1.39376 * 120.82440 * 0.27855 * 7 6 5 21 21 C 1.40007 * 119.10245 * 0.24938 * 6 5 4 22 22 C 1.38026 * 118.40178 * 359.50606 * 21 6 5 23 23 C 1.50699 * 120.39056 * 180.24363 * 22 21 6 24 24 H 1.08997 * 109.46799 * 299.99757 * 1 2 3 25 25 H 1.09000 * 109.46878 * 59.99570 * 1 2 3 26 26 H 1.09001 * 109.47029 * 179.97438 * 1 2 3 27 27 H 1.07999 * 119.65394 * 180.02562 * 5 4 3 28 28 H 1.07999 * 120.28728 * 359.97438 * 8 7 6 29 29 H 1.07997 * 119.42563 * 180.02562 * 9 8 7 30 30 H 0.97000 * 119.99125 * 179.97438 * 15 14 12 31 31 H 1.07998 * 120.58655 * 0.02562 * 20 7 6 32 32 H 1.07996 * 120.79827 * 179.72496 * 21 6 5 33 33 H 1.08997 * 109.46913 * 270.25591 * 23 22 21 34 34 H 1.08999 * 109.47300 * 30.25082 * 23 22 21 35 35 H 1.08999 * 109.47811 * 150.25321 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 7 1.2343 2.6137 0.0005 5 6 1.4820 3.9077 0.0010 6 6 2.7918 4.3805 0.0005 7 6 3.0646 5.8382 0.0006 8 6 4.3791 6.3224 -0.0005 9 6 4.6003 7.6892 0.0001 10 7 3.5981 8.5407 0.0011 11 6 2.3259 8.1310 0.0021 12 6 1.2810 9.0841 0.0038 13 1 0.2517 8.7571 0.0050 14 6 1.5811 10.4520 0.0102 15 7 2.8271 10.8478 0.0091 16 14 0.2010 11.7108 0.0200 17 1 -0.6335 11.5210 1.2337 18 1 0.7790 13.0788 0.0251 19 1 -0.6395 11.5336 -1.1912 20 6 2.0195 6.7603 0.0069 21 6 3.8476 3.4611 -0.0059 22 6 3.5455 2.1143 -0.0010 23 6 4.6469 1.0858 -0.0020 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.6607 4.6090 0.0019 28 1 5.2126 5.6356 -0.0009 29 1 5.6137 8.0626 -0.0011 30 1 3.0349 11.7953 0.0132 31 1 0.9924 6.4268 0.0123 32 1 4.8738 3.7975 -0.0109 33 1 4.9120 0.8383 -1.0299 34 1 5.5202 1.4881 0.5115 35 1 4.3055 0.1871 0.5116 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243157458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:31 Heat of formation + Delta-G solvation = 38.704037 kcal Electronic energy + Delta-G solvation = -18857.489240 eV Core-core repulsion = 15945.273008 eV Total energy + Delta-G solvation = -2912.216232 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.33052 -39.82034 -35.74126 -34.79333 -34.45897 -31.98129 -30.72649 -29.76750 -28.38526 -27.58041 -25.26655 -24.31979 -22.67530 -22.03093 -19.19575 -19.11207 -17.85195 -17.33706 -16.72980 -16.12718 -15.76209 -15.72683 -15.71303 -14.87260 -14.55315 -14.42768 -14.37591 -14.17758 -14.13211 -13.66200 -13.43899 -13.14319 -13.12318 -12.87955 -12.81063 -12.57311 -12.21311 -11.75267 -11.73198 -11.39334 -11.11563 -10.64824 -10.42637 -9.79032 -9.61551 -9.53279 -8.39634 -8.31526 -6.54883 -0.40694 0.17427 0.47797 0.88024 1.26022 1.30757 1.40235 1.52456 1.54930 2.21982 2.63845 2.90350 3.43401 3.67525 3.85895 3.91149 3.92993 4.06148 4.19101 4.31505 4.35929 4.42251 4.56082 4.68690 4.77659 4.84678 4.87180 4.93458 5.07799 5.14058 5.17086 5.24007 5.43504 5.50754 5.63801 5.82671 6.08001 6.24856 6.65207 6.70200 6.92040 8.16137 8.43279 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.028323 B = 0.003599 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.345290 B = 7777.694189 C = 8745.585845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.061 6.061 3 C 0.085 3.915 4 N -0.496 5.496 5 C 0.102 3.898 6 C -0.090 4.090 7 C 0.006 3.994 8 C -0.295 4.295 9 C 0.107 3.893 10 N -0.520 5.520 11 C 0.225 3.775 12 C -0.470 4.470 13 H 0.089 0.911 14 C 0.025 3.975 15 N -0.756 5.756 16 Si 0.987 3.013 17 H -0.259 1.259 18 H -0.268 1.268 19 H -0.259 1.259 20 C -0.274 4.274 21 C -0.057 4.057 22 C -0.115 4.115 23 C -0.106 4.106 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.130 0.870 27 H 0.158 0.842 28 H 0.133 0.867 29 H 0.143 0.857 30 H 0.280 0.720 31 H 0.112 0.888 32 H 0.159 0.841 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 -17.191 -0.031 17.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.178 5.822 3 C -0.164 4.164 4 N -0.208 5.208 5 C -0.058 4.058 6 C -0.095 4.095 7 C -0.001 4.001 8 C -0.318 4.318 9 C -0.057 4.057 10 N -0.234 5.234 11 C 0.100 3.900 12 C -0.501 4.501 13 H 0.107 0.893 14 C -0.197 4.197 15 N -0.378 5.378 16 Si 0.806 3.194 17 H -0.183 1.183 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.296 4.296 21 C -0.084 4.084 22 C -0.122 4.122 23 C -0.164 4.164 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.148 0.852 27 H 0.176 0.824 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.090 0.910 31 H 0.130 0.870 32 H 0.177 0.823 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.094 -17.451 -0.028 17.451 hybrid contribution -0.744 1.574 0.007 1.741 sum -0.650 -15.877 -0.022 15.890 Atomic orbital electron populations 1.23562 0.93055 1.07454 1.06106 1.85073 1.08772 0.96963 1.91423 1.23484 0.92086 0.99489 1.01310 1.67958 1.35201 1.02438 1.15156 1.22857 0.95939 0.91417 0.95561 1.19879 0.94851 0.93029 1.01709 1.18716 0.93920 0.90496 0.96972 1.21665 0.95747 0.96477 1.17894 1.22937 0.98571 0.90238 0.93939 1.68675 0.99328 1.37197 1.18215 1.18944 0.91016 0.90818 0.89182 1.19990 0.93799 0.91494 1.44834 0.89259 1.26984 0.98905 1.01355 0.92464 1.70220 1.20797 1.17311 1.29425 0.85202 0.77813 0.76250 0.80090 1.18291 1.19193 1.18285 1.21979 0.98135 0.93815 1.15693 1.21745 1.00139 0.91354 0.95148 1.20753 0.94669 0.95582 1.01241 1.20816 0.95263 0.96188 1.04084 0.90206 0.90189 0.85169 0.82439 0.84907 0.83994 0.90970 0.87015 0.82346 0.89183 0.89222 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 10.01 113.37 1.13 -1.26 16 2 S -0.06 -1.31 20.76 -56.49 -1.17 -2.48 16 3 C 0.08 2.44 7.00 84.84 0.59 3.03 16 4 N -0.50 -16.29 9.40 -191.26 -1.80 -18.08 16 5 C 0.10 3.65 10.61 84.95 0.90 4.55 16 6 C -0.09 -3.30 5.89 -19.93 -0.12 -3.42 16 7 C 0.01 0.26 5.91 -19.88 -0.12 0.14 16 8 C -0.30 -12.46 9.53 22.77 0.22 -12.24 16 9 C 0.11 5.08 11.17 84.79 0.95 6.03 16 10 N -0.52 -29.13 7.85 -189.39 -1.49 -30.61 16 11 C 0.23 12.53 6.55 40.19 0.26 12.79 16 12 C -0.47 -25.65 9.14 23.49 0.21 -25.43 16 13 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 14 C 0.02 1.26 5.50 85.29 0.47 1.73 16 15 N -0.76 -40.99 11.46 21.84 0.25 -40.74 16 16 Si 0.99 38.17 29.56 68.60 2.03 40.19 16 17 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 18 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 20 C -0.27 -13.42 9.23 23.08 0.21 -13.21 16 21 C -0.06 -1.72 9.22 22.65 0.21 -1.51 16 22 C -0.11 -3.05 5.91 -19.66 -0.12 -3.17 16 23 C -0.11 -1.92 9.58 71.24 0.68 -1.24 16 24 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.13 1.51 8.14 -2.39 -0.02 1.50 16 27 H 0.16 5.54 6.30 -2.91 -0.02 5.52 16 28 H 0.13 4.53 6.38 -2.91 -0.02 4.51 16 29 H 0.14 5.87 8.06 -2.91 -0.02 5.85 16 30 H 0.28 13.70 8.29 -92.71 -0.77 12.93 16 31 H 0.11 5.07 6.35 -2.91 -0.02 5.05 16 32 H 0.16 4.07 6.39 -2.91 -0.02 4.05 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.34 8.09 -2.39 -0.02 1.32 16 35 H 0.08 1.36 6.79 -2.39 -0.02 1.34 16 Total: -1.00 -65.31 312.67 4.43 -60.88 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 1.12 Total: 24.03 kcal Atomic # 6 Polarization: -38.68 SS G_CDS: 5.49 Total: -33.19 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -3.03 Total: -89.44 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.19 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -1.17 Total: -2.48 kcal Total: -65.31 4.43 -60.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243157458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.582 kcal (2) G-P(sol) polarization free energy of solvation -65.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds