Wall clock time and date at job start Tue Mar 31 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76197 * 100.00036 * 2 1 4 4 N 1.32670 * 119.53724 * 359.97438 * 3 2 1 5 5 C 1.31678 * 121.62983 * 179.74236 * 4 3 2 6 6 C 1.39706 * 120.50685 * 0.53956 * 5 4 3 7 7 C 1.47666 * 120.47443 * 179.74754 * 6 5 4 8 8 C 1.39448 * 120.79527 * 129.72341 * 7 6 5 9 9 N 1.31616 * 120.64419 * 180.29795 * 8 7 6 10 10 C 1.32259 * 122.51669 * 359.42775 * 9 8 7 11 11 C 1.36412 * 121.54097 * 0.57504 * 10 9 8 12 12 C 1.41153 * 119.11564 * 359.72366 * 11 10 9 13 13 C 1.40835 * 121.11363 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99932 * 154.62280 * 13 12 11 15 15 C 1.40128 * 120.00010 * 334.62991 * 13 12 11 16 16 N 1.30717 * 119.99848 * 344.27425 * 15 13 12 17 17 Si 1.86803 * 119.99968 * 164.28289 * 15 13 12 18 18 H 1.48495 * 109.47251 * 59.99309 * 17 15 13 19 19 H 1.48496 * 109.46838 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46598 * 299.99267 * 17 15 13 21 21 C 1.40348 * 119.04699 * 359.47421 * 6 5 4 22 22 C 1.36876 * 118.49722 * 0.25261 * 21 6 5 23 23 C 1.50699 * 120.30822 * 179.97438 * 22 21 6 24 24 H 1.09000 * 109.47331 * 59.99466 * 1 2 3 25 25 H 1.08993 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46648 * 299.99730 * 1 2 3 27 27 H 1.07998 * 119.74579 * 180.28515 * 5 4 3 28 28 H 1.08002 * 119.67233 * 0.02562 * 8 7 6 29 29 H 1.08002 * 119.22725 * 180.32389 * 10 9 8 30 30 H 1.08002 * 120.44105 * 179.74699 * 11 10 9 31 31 H 0.97000 * 119.99987 * 180.02562 * 16 15 13 32 32 H 1.08004 * 120.74736 * 180.27331 * 21 6 5 33 33 H 1.09003 * 109.47050 * 89.99545 * 23 22 21 34 34 H 1.08993 * 109.47530 * 210.00009 * 23 22 21 35 35 H 1.09007 * 109.47092 * 330.00307 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0928 2.5798 -0.0005 5 6 1.2739 3.8840 0.0045 6 6 2.5637 4.4209 -0.0008 7 6 2.7660 5.8836 -0.0007 8 6 3.6261 6.4854 0.9173 9 7 3.7997 7.7901 0.9184 10 6 3.1896 8.5892 0.0591 11 6 2.3278 8.1028 -0.8797 12 6 2.0877 6.7130 -0.9371 13 6 1.2066 6.1655 -1.8896 14 1 1.3243 5.1400 -2.2075 15 6 0.1772 6.9512 -2.4251 16 7 -0.1648 8.0683 -1.8388 17 14 -0.7063 6.4021 -3.9767 18 1 -1.3470 5.0833 -3.7411 19 1 -1.7460 7.4004 -4.3338 20 1 0.2715 6.2859 -5.0882 21 6 3.6643 3.5501 -0.0002 22 6 3.4301 2.2015 0.0002 23 6 4.5817 1.2296 0.0002 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.4189 4.5437 0.0086 28 1 4.1515 5.8753 1.6371 29 1 3.3750 9.6523 0.1045 30 1 1.8361 8.7721 -1.5701 31 1 -0.8775 8.6120 -2.2092 32 1 4.6733 3.9354 0.0002 33 1 4.8597 0.9955 1.0279 34 1 4.2854 0.3150 -0.5133 35 1 5.4334 1.6753 -0.5139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243158495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:38 Heat of formation + Delta-G solvation = 41.494777 kcal Electronic energy + Delta-G solvation = -19524.974647 eV Core-core repulsion = 16612.879430 eV Total energy + Delta-G solvation = -2912.095216 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.71596 -38.20667 -34.38921 -33.36665 -32.76966 -30.44625 -28.98880 -28.49610 -26.87458 -26.13768 -23.65193 -22.13735 -21.52072 -20.15950 -17.80919 -17.47922 -16.18966 -15.70755 -15.17062 -14.64453 -14.51473 -14.48987 -14.10679 -13.48134 -13.20661 -13.03033 -12.75681 -12.57111 -12.48628 -12.30165 -12.26132 -12.01803 -11.72043 -11.56021 -11.37063 -11.10062 -10.49309 -10.30579 -9.97636 -9.68086 -9.41670 -9.16858 -8.95602 -8.14982 -8.09655 -7.80262 -7.15479 -6.93190 -4.77956 1.40194 1.79807 1.87800 2.45369 2.61740 2.71223 2.91787 2.95052 3.13106 3.71386 4.26002 4.45983 4.99278 5.19035 5.25338 5.38558 5.39188 5.48852 5.62047 5.67191 5.74664 5.79427 5.89165 5.98073 6.06347 6.25957 6.35094 6.57536 6.67122 6.74997 6.83168 7.01191 7.18847 7.22070 7.33896 7.65219 7.90740 8.24029 8.33311 8.50669 8.54628 9.47115 9.83387 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.006242 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.625701 B = 4484.792342 C = 5984.628784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.098 6.098 3 C 0.084 3.916 4 N -0.485 5.485 5 C 0.120 3.880 6 C -0.015 4.015 7 C -0.240 4.240 8 C 0.136 3.864 9 N -0.577 5.577 10 C 0.083 3.917 11 C -0.205 4.205 12 C 0.148 3.852 13 C -0.441 4.441 14 H 0.085 0.915 15 C 0.079 3.921 16 N -0.774 5.774 17 Si 0.909 3.091 18 H -0.260 1.260 19 H -0.274 1.274 20 H -0.260 1.260 21 C -0.081 4.081 22 C -0.114 4.114 23 C -0.107 4.107 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.164 0.836 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.288 0.712 32 H 0.131 0.869 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.434 -9.876 0.288 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.139 5.861 3 C -0.164 4.164 4 N -0.196 5.196 5 C -0.041 4.041 6 C -0.020 4.020 7 C -0.246 4.246 8 C -0.024 4.024 9 N -0.291 5.291 10 C -0.064 4.064 11 C -0.227 4.227 12 C 0.140 3.860 13 C -0.471 4.471 14 H 0.103 0.897 15 C -0.142 4.142 16 N -0.398 5.398 17 Si 0.733 3.267 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.185 1.185 21 C -0.108 4.108 22 C -0.122 4.122 23 C -0.165 4.165 24 H 0.104 0.896 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.181 0.819 28 H 0.139 0.861 29 H 0.137 0.863 30 H 0.144 0.856 31 H 0.099 0.901 32 H 0.149 0.851 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.635 -10.616 0.880 10.777 hybrid contribution -1.205 1.066 -1.381 2.120 sum 0.430 -9.550 -0.501 9.573 Atomic orbital electron populations 1.23340 0.94718 1.05015 1.06831 1.85225 1.07469 1.00483 1.92904 1.22602 0.91436 0.97538 1.04838 1.67883 1.32763 1.04629 1.14319 1.23042 0.97156 0.89426 0.94446 1.19654 0.92937 0.93825 0.95608 1.19366 1.10624 0.90811 1.03820 1.22104 0.93974 0.90971 0.95331 1.67328 1.28912 1.04869 1.28003 1.21739 0.94306 0.97851 0.92514 1.21905 1.01857 0.96570 1.02397 1.17712 0.88328 0.91148 0.88811 1.19558 1.09586 0.99233 1.18676 0.89735 1.26020 0.96693 0.93915 0.97614 1.69733 1.23362 1.11167 1.35506 0.86306 0.79236 0.79841 0.81324 1.18473 1.19919 1.18480 1.21274 0.99322 0.91551 0.98628 1.19993 0.93918 0.95094 1.03195 1.20699 0.95602 0.97779 1.02389 0.89608 0.88999 0.89636 0.81921 0.86089 0.86290 0.85557 0.90084 0.85117 0.91050 0.91192 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.63 101.05 0.97 -0.67 16 2 S -0.10 -1.40 20.90 -107.50 -2.25 -3.64 16 3 C 0.08 1.47 6.97 -16.74 -0.12 1.35 16 4 N -0.49 -9.37 9.10 -11.64 -0.11 -9.48 16 5 C 0.12 2.47 9.27 -17.07 -0.16 2.31 16 6 C -0.02 -0.31 5.00 -104.71 -0.52 -0.83 16 7 C -0.24 -5.45 5.56 -104.04 -0.58 -6.02 16 8 C 0.14 3.00 10.73 -17.19 -0.18 2.81 16 9 N -0.58 -13.45 10.32 -13.35 -0.14 -13.58 16 10 C 0.08 1.90 11.08 -18.03 -0.20 1.70 16 11 C -0.21 -4.97 8.72 -39.13 -0.34 -5.31 16 12 C 0.15 3.63 5.59 -106.25 -0.59 3.03 16 13 C -0.44 -10.63 7.32 -37.89 -0.28 -10.90 16 14 H 0.08 2.04 6.72 -52.49 -0.35 1.69 16 15 C 0.08 1.82 5.21 -17.32 -0.09 1.73 16 16 N -0.77 -18.18 10.95 55.56 0.61 -17.57 16 17 Si 0.91 17.52 29.59 -169.99 -5.03 12.49 16 18 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 21 C -0.08 -1.45 9.31 -39.28 -0.37 -1.82 16 22 C -0.11 -1.89 5.88 -104.67 -0.62 -2.51 16 23 C -0.11 -1.37 9.57 36.01 0.34 -1.02 16 24 H 0.08 1.16 8.12 -51.92 -0.42 0.74 16 25 H 0.09 0.90 8.14 -51.92 -0.42 0.47 16 26 H 0.08 1.12 8.12 -51.91 -0.42 0.70 16 27 H 0.16 3.50 7.39 -52.49 -0.39 3.11 16 28 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 29 H 0.12 2.41 8.06 -52.49 -0.42 1.99 16 30 H 0.13 3.09 6.27 -52.49 -0.33 2.77 16 31 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 32 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.86 6.78 -51.93 -0.35 0.50 16 35 H 0.07 0.79 8.09 -51.92 -0.42 0.37 16 LS Contribution 312.25 15.07 4.71 4.71 Total: -1.00 -26.19 312.25 -8.86 -35.05 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -3.93 Total: 8.16 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -2.73 Total: -16.14 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: 0.36 Total: -40.63 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Atomic # 16 Polarization: -1.40 SS G_CDS: -2.25 Total: -3.64 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.19 -8.86 -35.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243158495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.549 kcal (2) G-P(sol) polarization free energy of solvation -26.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds