Wall clock time and date at job start Tue Mar 31 2020 06:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76197 * 100.00036 * 2 1 4 4 N 1.32670 * 119.53724 * 359.97438 * 3 2 1 5 5 C 1.31678 * 121.62983 * 179.74236 * 4 3 2 6 6 C 1.39706 * 120.50685 * 0.53956 * 5 4 3 7 7 C 1.47666 * 120.47443 * 179.74754 * 6 5 4 8 8 C 1.39448 * 120.79527 * 129.72341 * 7 6 5 9 9 N 1.31616 * 120.64419 * 180.29795 * 8 7 6 10 10 C 1.32259 * 122.51669 * 359.42775 * 9 8 7 11 11 C 1.36412 * 121.54097 * 0.57504 * 10 9 8 12 12 C 1.41153 * 119.11564 * 359.72366 * 11 10 9 13 13 C 1.40835 * 121.11363 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99932 * 154.62280 * 13 12 11 15 15 C 1.40128 * 120.00010 * 334.62991 * 13 12 11 16 16 N 1.30717 * 119.99848 * 344.27425 * 15 13 12 17 17 Si 1.86803 * 119.99968 * 164.28289 * 15 13 12 18 18 H 1.48495 * 109.47251 * 59.99309 * 17 15 13 19 19 H 1.48496 * 109.46838 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46598 * 299.99267 * 17 15 13 21 21 C 1.40348 * 119.04699 * 359.47421 * 6 5 4 22 22 C 1.36876 * 118.49722 * 0.25261 * 21 6 5 23 23 C 1.50699 * 120.30822 * 179.97438 * 22 21 6 24 24 H 1.09000 * 109.47331 * 59.99466 * 1 2 3 25 25 H 1.08993 * 109.47318 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46648 * 299.99730 * 1 2 3 27 27 H 1.07998 * 119.74579 * 180.28515 * 5 4 3 28 28 H 1.08002 * 119.67233 * 0.02562 * 8 7 6 29 29 H 1.08002 * 119.22725 * 180.32389 * 10 9 8 30 30 H 1.08002 * 120.44105 * 179.74699 * 11 10 9 31 31 H 0.97000 * 119.99987 * 180.02562 * 16 15 13 32 32 H 1.08004 * 120.74736 * 180.27331 * 21 6 5 33 33 H 1.09003 * 109.47050 * 89.99545 * 23 22 21 34 34 H 1.08993 * 109.47530 * 210.00009 * 23 22 21 35 35 H 1.09007 * 109.47092 * 330.00307 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0928 2.5798 -0.0005 5 6 1.2739 3.8840 0.0045 6 6 2.5637 4.4209 -0.0008 7 6 2.7660 5.8836 -0.0007 8 6 3.6261 6.4854 0.9173 9 7 3.7997 7.7901 0.9184 10 6 3.1896 8.5892 0.0591 11 6 2.3278 8.1028 -0.8797 12 6 2.0877 6.7130 -0.9371 13 6 1.2066 6.1655 -1.8896 14 1 1.3243 5.1400 -2.2075 15 6 0.1772 6.9512 -2.4251 16 7 -0.1648 8.0683 -1.8388 17 14 -0.7063 6.4021 -3.9767 18 1 -1.3470 5.0833 -3.7411 19 1 -1.7460 7.4004 -4.3338 20 1 0.2715 6.2859 -5.0882 21 6 3.6643 3.5501 -0.0002 22 6 3.4301 2.2015 0.0002 23 6 4.5817 1.2296 0.0002 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 0.4189 4.5437 0.0086 28 1 4.1515 5.8753 1.6371 29 1 3.3750 9.6523 0.1045 30 1 1.8361 8.7721 -1.5701 31 1 -0.8775 8.6120 -2.2092 32 1 4.6733 3.9354 0.0002 33 1 4.8597 0.9955 1.0279 34 1 4.2854 0.3150 -0.5133 35 1 5.4334 1.6753 -0.5139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243158495.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:38 Heat of formation + Delta-G solvation = 28.864416 kcal Electronic energy + Delta-G solvation = -19525.522340 eV Core-core repulsion = 16612.879430 eV Total energy + Delta-G solvation = -2912.642910 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21042 -39.90886 -36.14924 -34.68873 -34.36042 -32.21259 -30.45006 -29.72836 -28.18447 -27.81985 -25.18828 -23.69919 -23.22583 -21.73561 -19.56042 -18.83204 -17.71910 -17.36854 -16.67296 -16.32137 -16.13235 -15.85817 -15.45969 -14.71671 -14.55213 -14.37644 -14.28297 -14.19311 -14.03308 -13.60192 -13.50204 -13.30284 -13.14939 -13.03504 -12.94057 -12.71830 -12.06681 -11.80831 -11.41503 -11.36642 -10.95367 -10.64873 -10.29478 -9.94808 -9.84624 -9.47751 -8.81785 -8.32190 -6.59661 -0.09368 0.36676 0.65511 0.91554 0.95682 1.31606 1.32872 1.42664 1.50656 2.10452 2.68620 2.77961 3.62274 3.64364 3.88915 4.00304 4.08026 4.16038 4.32639 4.34611 4.39298 4.55848 4.57297 4.77217 4.81532 4.92153 4.95674 4.97738 5.13015 5.22115 5.25283 5.35326 5.43699 5.57547 5.70913 5.88467 6.12062 6.43870 6.70785 6.73064 6.86405 7.67182 8.12740 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.014455 B = 0.006242 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.625701 B = 4484.792342 C = 5984.628784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.062 6.062 3 C 0.068 3.932 4 N -0.496 5.496 5 C 0.105 3.895 6 C -0.038 4.038 7 C -0.240 4.240 8 C 0.128 3.872 9 N -0.588 5.588 10 C 0.080 3.920 11 C -0.226 4.226 12 C 0.121 3.879 13 C -0.459 4.459 14 H 0.076 0.924 15 C 0.046 3.954 16 N -0.800 5.800 17 Si 0.972 3.028 18 H -0.264 1.264 19 H -0.260 1.260 20 H -0.260 1.260 21 C -0.077 4.077 22 C -0.113 4.113 23 C -0.104 4.104 24 H 0.074 0.926 25 H 0.126 0.874 26 H 0.078 0.922 27 H 0.140 0.860 28 H 0.148 0.852 29 H 0.143 0.857 30 H 0.117 0.883 31 H 0.296 0.704 32 H 0.149 0.851 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 -12.149 0.100 12.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.176 5.824 3 C -0.180 4.180 4 N -0.207 5.207 5 C -0.054 4.054 6 C -0.044 4.044 7 C -0.246 4.246 8 C -0.030 4.030 9 N -0.302 5.302 10 C -0.068 4.068 11 C -0.248 4.248 12 C 0.113 3.887 13 C -0.489 4.489 14 H 0.094 0.906 15 C -0.173 4.173 16 N -0.424 5.424 17 Si 0.793 3.207 18 H -0.188 1.188 19 H -0.184 1.184 20 H -0.184 1.184 21 C -0.104 4.104 22 C -0.120 4.120 23 C -0.161 4.161 24 H 0.093 0.907 25 H 0.144 0.856 26 H 0.097 0.903 27 H 0.158 0.842 28 H 0.165 0.835 29 H 0.160 0.840 30 H 0.135 0.865 31 H 0.107 0.893 32 H 0.167 0.833 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.334 -12.888 0.708 13.117 hybrid contribution -1.400 1.590 -1.246 2.458 sum 0.933 -11.298 -0.539 11.350 Atomic orbital electron populations 1.23440 0.93755 1.06961 1.05943 1.85066 1.08497 0.96757 1.92116 1.23358 0.91804 0.99482 1.03353 1.67886 1.33765 1.04141 1.14951 1.22713 0.96645 0.90010 0.96067 1.19587 0.93814 0.93063 0.97908 1.19602 1.09823 0.92098 1.03068 1.22510 0.93997 0.90943 0.95558 1.67398 1.29265 1.05448 1.28106 1.22068 0.93692 0.99055 0.91965 1.21897 1.03007 0.96616 1.03291 1.18071 0.89160 0.91791 0.89635 1.19605 1.10517 0.99124 1.19632 0.90636 1.26708 0.96928 0.93808 0.99891 1.69761 1.24024 1.12002 1.36654 0.85379 0.78296 0.79395 0.77666 1.18796 1.18427 1.18404 1.21474 0.99280 0.91955 0.97670 1.20452 0.94958 0.95330 1.01299 1.20789 0.94432 0.96994 1.03918 0.90706 0.85611 0.90320 0.84232 0.83477 0.83985 0.86530 0.89279 0.83313 0.89194 0.90406 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.63 113.37 1.09 -1.95 16 2 S -0.06 -1.59 20.90 -56.49 -1.18 -2.77 16 3 C 0.07 2.30 6.97 84.86 0.59 2.89 16 4 N -0.50 -19.18 9.10 -190.75 -1.74 -20.92 16 5 C 0.11 4.48 9.27 85.07 0.79 5.27 16 6 C -0.04 -1.60 5.00 -19.92 -0.10 -1.70 16 7 C -0.24 -11.12 5.56 -19.49 -0.11 -11.23 16 8 C 0.13 5.65 10.73 85.02 0.91 6.57 16 9 N -0.59 -27.36 10.32 -196.14 -2.02 -29.38 16 10 C 0.08 3.70 11.08 84.20 0.93 4.64 16 11 C -0.23 -11.31 8.72 22.56 0.20 -11.11 16 12 C 0.12 6.17 5.59 -20.92 -0.12 6.05 16 13 C -0.46 -22.99 7.32 23.36 0.17 -22.82 16 14 H 0.08 3.81 6.72 -2.91 -0.02 3.79 16 15 C 0.05 2.16 5.21 85.32 0.44 2.61 16 16 N -0.80 -38.61 10.95 21.86 0.24 -38.37 16 17 Si 0.97 36.35 29.59 68.60 2.03 38.38 16 18 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 19 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 21 C -0.08 -2.67 9.31 22.46 0.21 -2.46 16 22 C -0.11 -3.50 5.88 -19.89 -0.12 -3.61 16 23 C -0.10 -2.27 9.57 71.24 0.68 -1.59 16 24 H 0.07 1.92 8.12 -2.40 -0.02 1.90 16 25 H 0.13 2.03 8.14 -2.40 -0.02 2.01 16 26 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 27 H 0.14 6.44 7.39 -2.91 -0.02 6.41 16 28 H 0.15 5.57 8.06 -2.91 -0.02 5.55 16 29 H 0.14 5.74 8.06 -2.91 -0.02 5.72 16 30 H 0.12 5.95 6.27 -2.91 -0.02 5.93 16 31 H 0.30 12.86 8.29 -92.71 -0.77 12.09 16 32 H 0.15 4.50 8.06 -2.91 -0.02 4.48 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.61 6.78 -2.39 -0.02 1.59 16 35 H 0.09 1.62 8.09 -2.38 -0.02 1.60 16 Total: -1.00 -57.31 312.25 4.02 -53.29 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 1.11 Total: 28.23 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: 5.58 Total: -28.45 kcal Atomic # 7 Polarization: -85.15 SS G_CDS: -3.52 Total: -88.67 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 2.03 Total: 38.38 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -1.18 Total: -2.77 kcal Total: -57.31 4.02 -53.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243158495.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.152 kcal (2) G-P(sol) polarization free energy of solvation -57.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds