Wall clock time and date at job start Tue Mar 31 2020 06:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76207 * 102.99967 * 2 1 4 4 C 1.38942 * 120.17913 * 359.72346 * 3 2 1 5 5 C 1.38012 * 120.05833 * 179.78856 * 4 3 2 6 6 C 1.50698 * 119.78798 * 180.25617 * 5 4 3 7 7 C 1.38680 * 120.42402 * 0.47044 * 5 4 3 8 8 C 1.37779 * 120.36988 * 359.78377 * 7 5 4 9 9 C 1.39704 * 119.92704 * 359.97438 * 8 7 5 10 10 C 1.47634 * 120.20753 * 180.02562 * 9 8 7 11 11 C 1.40587 * 120.80291 * 129.69480 * 10 9 8 12 12 N 1.31525 * 119.08087 * 179.78018 * 11 10 9 13 13 C 1.33708 * 120.84256 * 0.48080 * 12 11 10 14 14 C 1.40915 * 119.12278 * 179.74769 * 13 12 11 15 15 H 1.07998 * 120.00168 * 180.02562 * 14 13 12 16 16 C 1.40093 * 119.99956 * 0.02562 * 14 13 12 17 17 N 1.30691 * 120.00085 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47102 * 60.00113 * 18 16 14 20 20 H 1.48497 * 109.47271 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46984 * 300.00124 * 18 16 14 22 22 N 1.33708 * 121.75469 * 359.76943 * 13 12 11 23 23 C 1.31528 * 120.84523 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47089 * 299.99885 * 1 2 3 26 26 H 1.09004 * 109.47568 * 59.99895 * 1 2 3 27 27 H 1.08004 * 119.97405 * 0.02562 * 4 3 2 28 28 H 1.08996 * 109.46993 * 270.21145 * 6 5 4 29 29 H 1.08999 * 109.47018 * 30.20862 * 6 5 4 30 30 H 1.08994 * 109.47187 * 150.20897 * 6 5 4 31 31 H 1.08007 * 119.81554 * 179.76358 * 7 5 4 32 32 H 1.07992 * 120.03765 * 180.02562 * 8 7 5 33 33 H 1.08008 * 120.45824 * 359.97438 * 11 10 9 34 34 H 0.97002 * 120.00290 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.46062 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1972 2.6677 -0.0058 5 6 1.5104 4.0117 -0.0014 6 6 0.4067 5.0377 -0.0019 7 6 2.8345 4.4243 -0.0010 8 6 3.8531 3.4965 -0.0005 9 6 3.5532 2.1321 0.0001 10 6 4.6398 1.1327 0.0012 11 6 4.6471 0.0782 0.9310 12 7 5.6295 -0.7957 0.8987 13 6 6.6166 -0.6847 0.0037 14 6 7.6540 -1.6384 0.0050 15 1 8.4586 -1.5621 -0.7114 16 6 7.6417 -2.6855 0.9356 17 7 6.6678 -2.7782 1.8022 18 14 9.0165 -3.9501 0.9368 19 1 10.3143 -3.2702 1.1791 20 1 8.7714 -4.9467 2.0101 21 1 9.0565 -4.6391 -0.3780 22 7 6.6459 0.3074 -0.8922 23 6 5.6952 1.2158 -0.9238 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.1635 2.3546 -0.0099 28 1 0.1409 5.2850 -1.0296 29 1 -0.4656 4.6332 0.5116 30 1 0.7462 5.9369 0.5120 31 1 3.0684 5.4787 -0.0013 32 1 4.8823 3.8237 0.0003 33 1 3.8553 -0.0148 1.6596 34 1 6.6595 -3.5030 2.4468 35 1 5.7247 2.0142 -1.6504 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243386766.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:57 Heat of formation + Delta-G solvation = 59.359510 kcal Electronic energy + Delta-G solvation = -19182.598277 eV Core-core repulsion = 16271.277733 eV Total energy + Delta-G solvation = -2911.320543 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.27714 -38.31356 -34.13352 -32.98259 -31.82072 -31.01413 -30.05020 -28.64987 -27.31000 -25.06803 -23.14546 -22.25455 -21.83985 -20.49021 -17.91641 -16.72517 -16.16329 -15.82897 -15.21470 -14.82614 -14.48918 -14.24865 -13.82628 -13.78836 -13.43030 -13.03241 -12.91254 -12.73330 -12.32518 -12.21111 -12.08913 -11.85161 -11.44693 -11.35723 -11.29340 -10.79328 -10.77026 -10.37147 -9.86628 -9.55182 -9.32092 -9.14159 -9.07925 -8.64472 -7.72454 -7.39235 -6.84548 -6.57900 -4.77978 1.49826 1.63791 1.90076 2.60148 2.78503 3.01219 3.04122 3.06183 3.10722 3.81995 4.03316 4.58785 5.02485 5.10095 5.16934 5.18258 5.28695 5.48391 5.60206 5.67562 5.70899 5.77160 5.81332 5.88922 5.89855 5.96661 6.19392 6.29208 6.41718 6.60077 6.71092 6.83365 6.92909 7.05395 7.27535 7.32281 7.62528 8.07796 8.42717 8.50234 9.06811 10.03512 10.22793 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.027022 B = 0.004403 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.925511 B = 6358.321143 C = 7110.956196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 S -0.082 6.082 3 C -0.097 4.097 4 C -0.128 4.128 5 C -0.101 4.101 6 C -0.107 4.107 7 C -0.119 4.119 8 C -0.111 4.111 9 C 0.045 3.955 10 C -0.337 4.337 11 C 0.192 3.808 12 N -0.505 5.505 13 C 0.383 3.617 14 C -0.383 4.383 15 H 0.094 0.906 16 C 0.062 3.938 17 N -0.697 5.697 18 Si 0.921 3.079 19 H -0.262 1.262 20 H -0.275 1.275 21 H -0.262 1.262 22 N -0.595 5.595 23 C 0.191 3.809 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.116 0.884 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.133 0.867 34 H 0.279 0.721 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.579 7.610 -0.787 13.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.332 4.332 2 S 0.162 5.838 3 C -0.210 4.210 4 C -0.152 4.152 5 C -0.103 4.103 6 C -0.164 4.164 7 C -0.140 4.140 8 C -0.131 4.131 9 C 0.038 3.962 10 C -0.348 4.348 11 C 0.014 3.986 12 N -0.221 5.221 13 C 0.150 3.850 14 C -0.416 4.416 15 H 0.113 0.887 16 C -0.166 4.166 17 N -0.318 5.318 18 Si 0.744 3.256 19 H -0.186 1.186 20 H -0.200 1.200 21 H -0.186 1.186 22 N -0.313 5.313 23 C 0.016 3.984 24 H 0.120 0.880 25 H 0.096 0.904 26 H 0.095 0.905 27 H 0.133 0.867 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.151 0.849 34 H 0.090 0.910 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.177 5.550 -0.586 10.741 hybrid contribution -1.178 1.338 0.031 1.782 sum -10.355 6.888 -0.554 12.449 Atomic orbital electron populations 1.23747 0.98410 1.06336 1.04746 1.86286 1.02334 1.02948 1.92264 1.22019 0.95968 0.96286 1.06699 1.20826 0.97522 0.92465 1.04373 1.19635 0.94598 0.93594 1.02465 1.20702 0.96524 0.97385 1.01743 1.20875 0.92070 0.98989 1.02055 1.21230 0.99025 0.91831 1.00996 1.18349 0.90034 0.92572 0.95273 1.19680 1.01638 1.04164 1.09280 1.23024 0.94756 0.87601 0.93202 1.69374 1.02800 1.25342 1.24550 1.19936 0.91055 0.89333 0.84644 1.19372 1.05012 1.04479 1.12765 0.88749 1.26189 0.97113 0.98827 0.94494 1.70137 1.26349 1.25646 1.09645 0.86157 0.80866 0.79404 0.79165 1.18618 1.19966 1.18606 1.68643 1.28008 1.06829 1.27826 1.22599 0.87970 0.94486 0.93309 0.88018 0.90382 0.90530 0.86657 0.91739 0.92173 0.91853 0.86589 0.85915 0.84947 0.91008 0.85404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.15 101.05 0.92 -1.03 16 2 S -0.08 -1.43 19.46 -107.50 -2.09 -3.52 16 3 C -0.10 -1.70 6.12 -38.45 -0.24 -1.94 16 4 C -0.13 -1.90 9.00 -39.40 -0.35 -2.25 16 5 C -0.10 -1.38 5.88 -104.54 -0.62 -1.99 16 6 C -0.11 -1.06 10.00 36.00 0.36 -0.70 16 7 C -0.12 -1.69 9.67 -39.59 -0.38 -2.07 16 8 C -0.11 -1.83 9.55 -39.20 -0.37 -2.21 16 9 C 0.04 0.85 5.53 -104.64 -0.58 0.27 16 10 C -0.34 -7.56 5.10 -104.29 -0.53 -8.09 16 11 C 0.19 4.70 9.42 -16.80 -0.16 4.54 16 12 N -0.50 -13.97 7.82 -12.40 -0.10 -14.07 16 13 C 0.38 10.80 7.35 -158.12 -1.16 9.64 16 14 C -0.38 -10.36 9.34 -37.87 -0.35 -10.72 16 15 H 0.09 2.44 7.85 -52.49 -0.41 2.03 16 16 C 0.06 1.55 5.50 -17.34 -0.10 1.45 16 17 N -0.70 -18.05 11.40 55.55 0.63 -17.42 16 18 Si 0.92 18.13 29.56 -169.99 -5.02 13.11 16 19 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 20 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 21 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 22 N -0.59 -15.80 10.33 -12.40 -0.13 -15.93 16 23 C 0.19 4.45 10.86 -16.80 -0.18 4.27 16 24 H 0.10 1.07 8.14 -51.92 -0.42 0.65 16 25 H 0.08 0.84 7.76 -51.92 -0.40 0.44 16 26 H 0.08 0.83 7.74 -51.92 -0.40 0.43 16 27 H 0.12 1.45 5.89 -52.48 -0.31 1.14 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.06 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 33 H 0.13 3.06 7.16 -52.48 -0.38 2.68 16 34 H 0.28 6.47 8.29 -40.82 -0.34 6.13 16 35 H 0.13 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 313.70 15.07 4.73 4.73 Total: -1.00 -29.95 313.70 -9.71 -39.66 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -3.99 Total: 4.28 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -3.74 Total: -10.83 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.41 Total: -47.42 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.02 Total: 13.11 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -2.09 Total: -3.52 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.95 -9.71 -39.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243386766.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.023 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds