Wall clock time and date at job start Tue Mar 31 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76207 * 102.99967 * 2 1 4 4 C 1.38942 * 120.17913 * 359.72346 * 3 2 1 5 5 C 1.38012 * 120.05833 * 179.78856 * 4 3 2 6 6 C 1.50698 * 119.78798 * 180.25617 * 5 4 3 7 7 C 1.38680 * 120.42402 * 0.47044 * 5 4 3 8 8 C 1.37779 * 120.36988 * 359.78377 * 7 5 4 9 9 C 1.39704 * 119.92704 * 359.97438 * 8 7 5 10 10 C 1.47634 * 120.20753 * 180.02562 * 9 8 7 11 11 C 1.40587 * 120.80291 * 129.69480 * 10 9 8 12 12 N 1.31525 * 119.08087 * 179.78018 * 11 10 9 13 13 C 1.33708 * 120.84256 * 0.48080 * 12 11 10 14 14 C 1.40915 * 119.12278 * 179.74769 * 13 12 11 15 15 H 1.07998 * 120.00168 * 180.02562 * 14 13 12 16 16 C 1.40093 * 119.99956 * 0.02562 * 14 13 12 17 17 N 1.30691 * 120.00085 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00019 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47102 * 60.00113 * 18 16 14 20 20 H 1.48497 * 109.47271 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46984 * 300.00124 * 18 16 14 22 22 N 1.33708 * 121.75469 * 359.76943 * 13 12 11 23 23 C 1.31528 * 120.84523 * 359.97438 * 22 13 12 24 24 H 1.09001 * 109.47190 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47089 * 299.99885 * 1 2 3 26 26 H 1.09004 * 109.47568 * 59.99895 * 1 2 3 27 27 H 1.08004 * 119.97405 * 0.02562 * 4 3 2 28 28 H 1.08996 * 109.46993 * 270.21145 * 6 5 4 29 29 H 1.08999 * 109.47018 * 30.20862 * 6 5 4 30 30 H 1.08994 * 109.47187 * 150.20897 * 6 5 4 31 31 H 1.08007 * 119.81554 * 179.76358 * 7 5 4 32 32 H 1.07992 * 120.03765 * 180.02562 * 8 7 5 33 33 H 1.08008 * 120.45824 * 359.97438 * 11 10 9 34 34 H 0.97002 * 120.00290 * 180.02562 * 17 16 14 35 35 H 1.08001 * 120.46062 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.1972 2.6677 -0.0058 5 6 1.5104 4.0117 -0.0014 6 6 0.4067 5.0377 -0.0019 7 6 2.8345 4.4243 -0.0010 8 6 3.8531 3.4965 -0.0005 9 6 3.5532 2.1321 0.0001 10 6 4.6398 1.1327 0.0012 11 6 4.6471 0.0782 0.9310 12 7 5.6295 -0.7957 0.8987 13 6 6.6166 -0.6847 0.0037 14 6 7.6540 -1.6384 0.0050 15 1 8.4586 -1.5621 -0.7114 16 6 7.6417 -2.6855 0.9356 17 7 6.6678 -2.7782 1.8022 18 14 9.0165 -3.9501 0.9368 19 1 10.3143 -3.2702 1.1791 20 1 8.7714 -4.9467 2.0101 21 1 9.0565 -4.6391 -0.3780 22 7 6.6459 0.3074 -0.8922 23 6 5.6952 1.2158 -0.9238 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 0.1635 2.3546 -0.0099 28 1 0.1409 5.2850 -1.0296 29 1 -0.4656 4.6332 0.5116 30 1 0.7462 5.9369 0.5120 31 1 3.0684 5.4787 -0.0013 32 1 4.8823 3.8237 0.0003 33 1 3.8553 -0.0148 1.6596 34 1 6.6595 -3.5030 2.4468 35 1 5.7247 2.0142 -1.6504 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243386766.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:56 Heat of formation + Delta-G solvation = 43.266171 kcal Electronic energy + Delta-G solvation = -19183.296136 eV Core-core repulsion = 16271.277733 eV Total energy + Delta-G solvation = -2912.018403 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.97296 -39.76635 -35.90517 -34.43838 -33.75208 -32.21650 -31.61839 -29.74126 -28.83033 -26.52603 -24.85287 -23.84470 -23.33143 -21.88998 -19.81420 -18.06689 -17.97526 -17.17299 -16.96957 -16.29095 -16.11913 -15.45261 -14.95378 -14.85603 -14.73721 -14.50639 -14.31857 -14.29924 -13.99015 -13.30683 -13.11019 -13.06952 -12.95788 -12.86321 -12.73576 -12.57323 -11.99612 -11.94431 -11.34353 -11.31653 -11.05841 -10.78314 -10.52319 -10.16691 -9.41291 -9.17675 -8.48008 -8.21685 -6.74333 0.11327 0.40667 0.66891 0.89727 1.08152 1.39340 1.53575 1.54085 1.68947 2.18643 2.67080 2.84311 3.85542 3.95414 3.96948 4.00572 4.04036 4.14300 4.27411 4.28216 4.38025 4.48828 4.49030 4.64815 4.83144 4.90530 4.94680 4.96549 5.05740 5.10675 5.30717 5.31945 5.38451 5.67234 5.70106 5.80741 6.08134 6.11149 6.49180 6.56896 7.14390 8.18010 8.32211 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.027022 B = 0.004403 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.925511 B = 6358.321143 C = 7110.956196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.169 6.169 3 C -0.095 4.095 4 C -0.132 4.132 5 C -0.087 4.087 6 C -0.106 4.106 7 C -0.118 4.118 8 C -0.112 4.112 9 C 0.000 4.000 10 C -0.311 4.311 11 C 0.178 3.822 12 N -0.535 5.535 13 C 0.356 3.644 14 C -0.425 4.425 15 H 0.092 0.908 16 C 0.022 3.978 17 N -0.737 5.737 18 Si 1.002 2.998 19 H -0.256 1.256 20 H -0.261 1.261 21 H -0.257 1.257 22 N -0.619 5.619 23 C 0.175 3.825 24 H 0.116 0.884 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.142 0.858 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.150 0.850 32 H 0.125 0.875 33 H 0.138 0.862 34 H 0.287 0.713 35 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 9.527 -0.901 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.074 5.926 3 C -0.207 4.207 4 C -0.156 4.156 5 C -0.088 4.088 6 C -0.163 4.163 7 C -0.138 4.138 8 C -0.132 4.132 9 C -0.007 4.007 10 C -0.321 4.321 11 C 0.002 3.998 12 N -0.252 5.252 13 C 0.121 3.879 14 C -0.459 4.459 15 H 0.111 0.889 16 C -0.203 4.203 17 N -0.359 5.359 18 Si 0.821 3.179 19 H -0.180 1.180 20 H -0.184 1.184 21 H -0.181 1.181 22 N -0.339 5.339 23 C 0.002 3.998 24 H 0.135 0.865 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.159 0.841 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.167 0.833 32 H 0.143 0.857 33 H 0.155 0.845 34 H 0.098 0.902 35 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.443 7.530 -0.704 13.716 hybrid contribution -0.818 1.017 0.033 1.306 sum -12.261 8.547 -0.672 14.961 Atomic orbital electron populations 1.23764 0.92729 1.07897 1.06323 1.86552 1.08677 1.04820 1.92555 1.22029 0.95969 0.96062 1.06673 1.21178 0.98081 0.92562 1.03751 1.20188 0.95642 0.93991 0.99026 1.20803 0.95486 0.96767 1.03216 1.21247 0.91702 1.00160 1.00736 1.21339 1.00154 0.91133 1.00603 1.18306 0.89855 0.92914 0.99640 1.19903 1.01715 1.03518 1.06936 1.23219 0.94317 0.88211 0.94003 1.69310 1.03671 1.26935 1.25310 1.20338 0.91831 0.90303 0.85431 1.19683 1.05527 1.06183 1.14510 0.88944 1.27149 0.99687 1.00215 0.93231 1.70210 1.28363 1.26819 1.10467 0.84970 0.77072 0.76364 0.79533 1.18015 1.18447 1.18145 1.68643 1.29585 1.07533 1.28104 1.23135 0.87890 0.94634 0.94109 0.86523 0.88686 0.88852 0.84076 0.90141 0.90768 0.90170 0.83251 0.85701 0.84481 0.90225 0.82480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.15 113.37 1.04 -1.94 16 2 S -0.17 -5.91 19.46 -56.49 -1.10 -7.01 16 3 C -0.09 -3.24 6.12 23.00 0.14 -3.10 16 4 C -0.13 -3.49 9.00 22.38 0.20 -3.29 16 5 C -0.09 -1.99 5.88 -19.81 -0.12 -2.11 16 6 C -0.11 -1.53 10.00 71.24 0.71 -0.82 16 7 C -0.12 -2.92 9.67 22.27 0.22 -2.70 16 8 C -0.11 -3.56 9.55 22.52 0.22 -3.34 16 9 C 0.00 -0.02 5.53 -19.88 -0.11 -0.13 16 10 C -0.31 -14.44 5.10 -19.65 -0.10 -14.54 16 11 C 0.18 9.19 9.42 85.31 0.80 9.99 16 12 N -0.54 -31.42 7.82 -193.13 -1.51 -32.93 16 13 C 0.36 21.23 7.35 134.83 0.99 22.22 16 14 C -0.42 -24.30 9.34 23.38 0.22 -24.08 16 15 H 0.09 5.06 7.85 -2.91 -0.02 5.04 16 16 C 0.02 1.12 5.50 85.31 0.47 1.59 16 17 N -0.74 -39.90 11.40 21.85 0.25 -39.66 16 18 Si 1.00 38.11 29.56 68.60 2.03 40.14 16 19 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 20 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 21 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 22 N -0.62 -34.58 10.33 -193.14 -2.00 -36.58 16 23 C 0.17 8.44 10.86 85.31 0.93 9.37 16 24 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.09 1.73 7.76 -2.39 -0.02 1.71 16 26 H 0.09 1.71 7.74 -2.39 -0.02 1.69 16 27 H 0.14 2.94 5.89 -2.91 -0.02 2.93 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 0.92 8.08 -2.39 -0.02 0.90 16 30 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 32 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 33 H 0.14 6.73 7.16 -2.91 -0.02 6.71 16 34 H 0.29 13.80 8.29 -92.71 -0.77 13.04 16 35 H 0.16 6.40 8.06 -2.91 -0.02 6.37 16 Total: -1.00 -70.35 313.70 4.38 -65.97 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 1.11 Total: 22.93 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: 5.60 Total: -12.87 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -3.26 Total: -109.17 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Atomic # 16 Polarization: -5.91 SS G_CDS: -1.10 Total: -7.01 kcal Total: -70.35 4.38 -65.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243386766.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.238 kcal (2) G-P(sol) polarization free energy of solvation -70.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds