Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76194 * 100.00189 * 2 1 4 4 C 1.39461 * 119.54605 * 179.72830 * 3 2 1 5 5 C 1.36858 * 119.38105 * 179.73000 * 4 3 2 6 6 C 1.40328 * 118.49991 * 0.53185 * 5 4 3 7 7 C 1.47772 * 120.47061 * 179.70323 * 6 5 4 8 8 C 1.40006 * 119.45733 * 7.15821 * 7 6 5 9 9 C 1.36531 * 119.46533 * 179.72077 * 8 7 6 10 10 C 1.41342 * 118.42270 * 0.53325 * 9 8 7 11 11 C 1.41007 * 120.54701 * 179.74601 * 10 9 8 12 12 H 1.08002 * 120.00002 * 204.23239 * 11 10 9 13 13 C 1.39975 * 120.00031 * 24.23459 * 11 10 9 14 14 N 1.30821 * 119.99953 * 18.14536 * 13 11 10 15 15 Si 1.86802 * 119.99882 * 198.14496 * 13 11 10 16 16 H 1.48497 * 109.47372 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.46869 * 119.99863 * 15 13 11 18 18 H 1.48497 * 109.47135 * 239.99504 * 15 13 11 19 19 C 1.40966 * 118.90829 * 359.72962 * 10 9 8 20 20 N 1.31251 * 120.40427 * 359.97438 * 19 10 9 21 21 C 1.39591 * 119.06270 * 359.73498 * 6 5 4 22 22 C 1.50699 * 119.74285 * 179.97438 * 21 6 5 23 23 N 1.31705 * 120.51406 * 359.97438 * 21 6 5 24 24 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47057 * 300.00128 * 1 2 3 26 26 H 1.09009 * 109.47307 * 59.99458 * 1 2 3 27 27 H 1.07999 * 120.30727 * 359.97438 * 4 3 2 28 28 H 1.08003 * 120.74758 * 180.24301 * 5 4 3 29 29 H 1.07996 * 120.27150 * 359.97438 * 8 7 6 30 30 H 1.08006 * 120.79211 * 180.26607 * 9 8 7 31 31 H 0.97000 * 119.99857 * 180.02562 * 14 13 11 32 32 H 1.07998 * 119.79714 * 179.97438 * 19 10 9 33 33 H 1.09007 * 109.46736 * 277.43793 * 22 21 6 34 34 H 1.08998 * 109.47267 * 37.43761 * 22 21 6 35 35 H 1.09000 * 109.47071 * 157.44213 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4302 2.2017 0.0058 5 6 3.6641 3.5501 0.0001 6 6 2.5634 4.4206 0.0001 7 6 2.7657 5.8844 0.0007 8 6 4.0582 6.4009 -0.1506 9 6 4.2445 7.7535 -0.1558 10 6 3.1157 8.5887 0.0048 11 6 3.2574 9.9917 0.0116 12 1 2.5192 10.6066 0.5049 13 6 4.3548 10.5873 -0.6210 14 7 5.0459 9.9134 -1.5040 15 14 4.8324 12.3446 -0.2045 16 1 3.8978 12.8829 0.8163 17 1 6.2175 12.3675 0.3306 18 1 4.7613 13.1805 -1.4298 19 6 1.8458 7.9962 0.1576 20 7 1.7169 6.6901 0.1500 21 6 1.2747 3.8842 0.0002 22 6 0.0816 4.8049 0.0007 23 7 1.0933 2.5797 -0.0003 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 4.2557 1.5054 0.0106 28 1 4.6730 3.9356 0.0005 29 1 4.9004 5.7350 -0.2664 30 1 5.2317 8.1751 -0.2753 31 1 5.8066 10.3261 -1.9421 32 1 0.9735 8.6209 0.2817 33 1 -0.1245 5.1318 1.0200 34 1 0.2924 5.6731 -0.6237 35 1 -0.7859 4.2757 -0.3935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243561792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = 54.302427 kcal Electronic energy + Delta-G solvation = -19074.794831 eV Core-core repulsion = 16163.254996 eV Total energy + Delta-G solvation = -2911.539835 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.85089 -38.23009 -34.55363 -32.81286 -32.43407 -30.77254 -29.74696 -28.70645 -27.18546 -25.79712 -23.33189 -22.35525 -21.04654 -20.86074 -17.65936 -17.32385 -16.25455 -16.12721 -15.39555 -14.63188 -14.46950 -14.35633 -14.06786 -13.47385 -13.42175 -13.38708 -12.66304 -12.57090 -12.32862 -12.15025 -11.94578 -11.88553 -11.58228 -11.47088 -11.27068 -11.04752 -10.72942 -10.42866 -10.02873 -9.85529 -9.47144 -9.20586 -9.07946 -8.49500 -8.03803 -7.91228 -7.20770 -6.99021 -4.67629 1.18211 1.70930 1.79316 2.36171 2.52029 2.81981 2.87782 2.92789 3.03031 3.63923 4.07488 4.46685 4.87453 5.19111 5.22048 5.30077 5.32809 5.43551 5.46958 5.70430 5.87796 5.89261 6.03565 6.26781 6.32395 6.44949 6.47588 6.52164 6.68582 6.75413 6.85485 6.90485 7.06959 7.17893 7.52948 7.65275 7.72376 8.17412 8.26387 8.36769 8.47100 9.37910 9.73365 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.045956 B = 0.003377 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.134412 B = 8289.036486 C = 8790.673468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.104 6.104 3 C 0.086 3.914 4 C -0.147 4.147 5 C -0.081 4.081 6 C -0.028 4.028 7 C -0.010 4.010 8 C -0.117 4.117 9 C -0.143 4.143 10 C 0.070 3.930 11 C -0.427 4.427 12 H 0.090 0.910 13 C 0.071 3.929 14 N -0.770 5.770 15 Si 0.916 3.084 16 H -0.256 1.256 17 H -0.268 1.268 18 H -0.270 1.270 19 C -0.019 4.019 20 N -0.437 5.437 21 C 0.140 3.860 22 C -0.086 4.086 23 N -0.485 5.485 24 H 0.093 0.907 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.129 0.871 28 H 0.135 0.865 29 H 0.101 0.899 30 H 0.126 0.874 31 H 0.288 0.712 32 H 0.132 0.868 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 -8.537 1.473 8.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.133 5.867 3 C -0.162 4.162 4 C -0.173 4.173 5 C -0.108 4.108 6 C -0.033 4.033 7 C -0.143 4.143 8 C -0.138 4.138 9 C -0.168 4.168 10 C 0.065 3.935 11 C -0.455 4.455 12 H 0.108 0.892 13 C -0.151 4.151 14 N -0.393 5.393 15 Si 0.739 3.261 16 H -0.179 1.179 17 H -0.193 1.193 18 H -0.195 1.195 19 C -0.185 4.185 20 N -0.145 5.145 21 C -0.002 4.002 22 C -0.144 4.144 23 N -0.198 5.198 24 H 0.111 0.889 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.119 0.881 30 H 0.144 0.856 31 H 0.100 0.900 32 H 0.149 0.851 33 H 0.090 0.910 34 H 0.127 0.873 35 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.692 -10.281 1.387 10.718 hybrid contribution 1.355 2.531 -0.066 2.872 sum -1.337 -7.750 1.321 7.974 Atomic orbital electron populations 1.23289 0.94083 1.05129 1.06813 1.85348 1.07999 1.00287 1.93041 1.22637 0.91964 0.97408 1.04223 1.21128 0.95833 0.96082 1.04211 1.21233 0.99276 0.92168 0.98125 1.19476 0.92916 0.92994 0.97919 1.18528 0.89950 0.89947 1.15889 1.21257 0.96018 0.96029 1.00484 1.21291 0.99517 0.91696 1.04285 1.18633 0.91934 0.94346 0.88547 1.19762 1.06145 0.91983 1.27625 0.89233 1.26127 0.94909 1.01344 0.92677 1.69800 1.14560 1.38892 1.16039 0.86111 0.79609 0.80564 0.79787 1.17913 1.19316 1.19544 1.22543 0.95884 0.89802 1.10259 1.67215 1.32351 1.05529 1.09429 1.21426 0.94731 0.89041 0.94975 1.20929 0.92076 0.97715 1.03645 1.67700 1.33077 1.04013 1.15014 0.88873 0.89599 0.89593 0.85271 0.84688 0.88130 0.85632 0.90042 0.85065 0.90997 0.87346 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.45 9.63 101.05 0.97 -0.47 16 2 S -0.10 -1.42 22.69 -107.50 -2.44 -3.86 16 3 C 0.09 1.47 6.98 -16.75 -0.12 1.35 16 4 C -0.15 -2.38 9.77 -39.63 -0.39 -2.77 16 5 C -0.08 -1.41 9.45 -39.30 -0.37 -1.79 16 6 C -0.03 -0.56 5.89 -104.71 -0.62 -1.18 16 7 C -0.01 -0.22 6.66 -82.76 -0.55 -0.77 16 8 C -0.12 -2.59 9.38 -39.54 -0.37 -2.96 16 9 C -0.14 -3.41 8.74 -39.02 -0.34 -3.75 16 10 C 0.07 1.70 5.59 -106.63 -0.60 1.11 16 11 C -0.43 -10.01 9.05 -37.88 -0.34 -10.35 16 12 H 0.09 1.98 7.91 -52.49 -0.42 1.56 16 13 C 0.07 1.58 5.15 -17.33 -0.09 1.49 16 14 N -0.77 -17.77 10.98 55.55 0.61 -17.16 16 15 Si 0.92 16.49 29.60 -169.99 -5.03 11.45 16 16 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 17 H -0.27 -4.79 7.11 56.52 0.40 -4.38 16 18 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 19 C -0.02 -0.44 10.97 -16.77 -0.18 -0.62 16 20 N -0.44 -9.86 6.21 -9.12 -0.06 -9.91 16 21 C 0.14 2.74 6.82 -82.14 -0.56 2.18 16 22 C -0.09 -1.57 8.67 36.00 0.31 -1.26 16 23 N -0.49 -8.95 9.02 -7.92 -0.07 -9.02 16 24 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 25 H 0.08 1.05 8.12 -51.92 -0.42 0.63 16 26 H 0.09 1.06 8.12 -51.91 -0.42 0.63 16 27 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 28 H 0.14 2.11 6.32 -52.48 -0.33 1.77 16 29 H 0.10 1.94 6.26 -52.49 -0.33 1.61 16 30 H 0.13 3.02 6.25 -52.48 -0.33 2.70 16 31 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 32 H 0.13 2.74 8.06 -52.49 -0.42 2.31 16 33 H 0.07 1.30 8.12 -51.93 -0.42 0.87 16 34 H 0.11 2.14 5.71 -51.93 -0.30 1.84 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 310.09 15.07 4.67 4.67 Total: -1.00 -25.62 310.09 -9.35 -34.97 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -3.79 Total: 8.66 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -3.24 Total: -19.80 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.48 Total: -36.09 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.45 kcal Atomic # 16 Polarization: -1.42 SS G_CDS: -2.44 Total: -3.86 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -25.62 -9.35 -34.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243561792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.269 kcal (2) G-P(sol) polarization free energy of solvation -25.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds