Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76194 * 100.00189 * 2 1 4 4 C 1.39461 * 119.54605 * 179.72830 * 3 2 1 5 5 C 1.36858 * 119.38105 * 179.73000 * 4 3 2 6 6 C 1.40328 * 118.49991 * 0.53185 * 5 4 3 7 7 C 1.47772 * 120.47061 * 179.70323 * 6 5 4 8 8 C 1.40006 * 119.45733 * 7.15821 * 7 6 5 9 9 C 1.36531 * 119.46533 * 179.72077 * 8 7 6 10 10 C 1.41342 * 118.42270 * 0.53325 * 9 8 7 11 11 C 1.41007 * 120.54701 * 179.74601 * 10 9 8 12 12 H 1.08002 * 120.00002 * 204.23239 * 11 10 9 13 13 C 1.39975 * 120.00031 * 24.23459 * 11 10 9 14 14 N 1.30821 * 119.99953 * 18.14536 * 13 11 10 15 15 Si 1.86802 * 119.99882 * 198.14496 * 13 11 10 16 16 H 1.48497 * 109.47372 * 359.97438 * 15 13 11 17 17 H 1.48507 * 109.46869 * 119.99863 * 15 13 11 18 18 H 1.48497 * 109.47135 * 239.99504 * 15 13 11 19 19 C 1.40966 * 118.90829 * 359.72962 * 10 9 8 20 20 N 1.31251 * 120.40427 * 359.97438 * 19 10 9 21 21 C 1.39591 * 119.06270 * 359.73498 * 6 5 4 22 22 C 1.50699 * 119.74285 * 179.97438 * 21 6 5 23 23 N 1.31705 * 120.51406 * 359.97438 * 21 6 5 24 24 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47057 * 300.00128 * 1 2 3 26 26 H 1.09009 * 109.47307 * 59.99458 * 1 2 3 27 27 H 1.07999 * 120.30727 * 359.97438 * 4 3 2 28 28 H 1.08003 * 120.74758 * 180.24301 * 5 4 3 29 29 H 1.07996 * 120.27150 * 359.97438 * 8 7 6 30 30 H 1.08006 * 120.79211 * 180.26607 * 9 8 7 31 31 H 0.97000 * 119.99857 * 180.02562 * 14 13 11 32 32 H 1.07998 * 119.79714 * 179.97438 * 19 10 9 33 33 H 1.09007 * 109.46736 * 277.43793 * 22 21 6 34 34 H 1.08998 * 109.47267 * 37.43761 * 22 21 6 35 35 H 1.09000 * 109.47071 * 157.44213 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 3.4302 2.2017 0.0058 5 6 3.6641 3.5501 0.0001 6 6 2.5634 4.4206 0.0001 7 6 2.7657 5.8844 0.0007 8 6 4.0582 6.4009 -0.1506 9 6 4.2445 7.7535 -0.1558 10 6 3.1157 8.5887 0.0048 11 6 3.2574 9.9917 0.0116 12 1 2.5192 10.6066 0.5049 13 6 4.3548 10.5873 -0.6210 14 7 5.0459 9.9134 -1.5040 15 14 4.8324 12.3446 -0.2045 16 1 3.8978 12.8829 0.8163 17 1 6.2175 12.3675 0.3306 18 1 4.7613 13.1805 -1.4298 19 6 1.8458 7.9962 0.1576 20 7 1.7169 6.6901 0.1500 21 6 1.2747 3.8842 0.0002 22 6 0.0816 4.8049 0.0007 23 7 1.0933 2.5797 -0.0003 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8900 27 1 4.2557 1.5054 0.0106 28 1 4.6730 3.9356 0.0005 29 1 4.9004 5.7350 -0.2664 30 1 5.2317 8.1751 -0.2753 31 1 5.8066 10.3261 -1.9421 32 1 0.9735 8.6209 0.2817 33 1 -0.1245 5.1318 1.0200 34 1 0.2924 5.6731 -0.6237 35 1 -0.7859 4.2757 -0.3935 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243561792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = 43.117176 kcal Electronic energy + Delta-G solvation = -19075.279860 eV Core-core repulsion = 16163.254996 eV Total energy + Delta-G solvation = -2912.024864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.32048 -39.88373 -36.22266 -34.23913 -33.96094 -32.47796 -31.34232 -29.71897 -28.65252 -27.41138 -24.86300 -23.98201 -22.59547 -22.46884 -19.38626 -18.58455 -17.81742 -17.61352 -16.97084 -16.10175 -15.90239 -15.76034 -15.56747 -14.94084 -14.68121 -14.57067 -14.14466 -14.01184 -13.91267 -13.66883 -13.33159 -13.27051 -13.14807 -12.90114 -12.76751 -12.57768 -12.17737 -11.71537 -11.54954 -11.41314 -11.00761 -10.63247 -10.45347 -10.25613 -9.72605 -9.48141 -8.81903 -8.36112 -6.43736 -0.28520 0.32378 0.61273 0.89148 1.08993 1.29398 1.39505 1.51740 1.55555 2.14525 2.53429 2.87717 3.50104 3.69981 3.71178 3.93313 4.06214 4.21930 4.34432 4.35543 4.39749 4.58205 4.73926 4.79452 4.85583 4.94136 4.97361 4.98503 5.06491 5.12187 5.23181 5.37995 5.48367 5.64578 5.82053 5.93695 5.97222 6.42929 6.64108 6.71321 6.84462 7.62689 8.11572 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.045956 B = 0.003377 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.134412 B = 8289.036486 C = 8790.673468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.075 6.075 3 C 0.079 3.921 4 C -0.148 4.148 5 C -0.073 4.073 6 C -0.063 4.063 7 C -0.012 4.012 8 C -0.122 4.122 9 C -0.161 4.161 10 C 0.045 3.955 11 C -0.458 4.458 12 H 0.093 0.907 13 C 0.035 3.965 14 N -0.803 5.803 15 Si 0.989 3.011 16 H -0.254 1.254 17 H -0.263 1.263 18 H -0.265 1.265 19 C -0.037 4.037 20 N -0.441 5.441 21 C 0.128 3.872 22 C -0.078 4.078 23 N -0.494 5.494 24 H 0.126 0.874 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.162 0.838 28 H 0.153 0.847 29 H 0.126 0.874 30 H 0.117 0.883 31 H 0.297 0.703 32 H 0.143 0.857 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.631 -10.335 1.661 10.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.162 5.838 3 C -0.170 4.170 4 C -0.173 4.173 5 C -0.101 4.101 6 C -0.068 4.068 7 C -0.147 4.147 8 C -0.143 4.143 9 C -0.186 4.186 10 C 0.040 3.960 11 C -0.486 4.486 12 H 0.111 0.889 13 C -0.183 4.183 14 N -0.427 5.427 15 Si 0.809 3.191 16 H -0.177 1.177 17 H -0.188 1.188 18 H -0.189 1.189 19 C -0.201 4.201 20 N -0.149 5.149 21 C -0.013 4.013 22 C -0.135 4.135 23 N -0.208 5.208 24 H 0.144 0.856 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.180 0.820 28 H 0.171 0.829 29 H 0.144 0.856 30 H 0.135 0.865 31 H 0.108 0.892 32 H 0.160 0.840 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.409 -12.083 1.575 12.421 hybrid contribution 1.192 2.704 -0.139 2.958 sum -1.217 -9.379 1.436 9.566 Atomic orbital electron populations 1.23404 0.92543 1.07131 1.06230 1.85295 1.09659 0.96704 1.92118 1.23388 0.92317 0.99387 1.01934 1.21502 0.96646 0.96041 1.03102 1.21492 0.99401 0.92603 0.96557 1.19530 0.94253 0.92098 1.00928 1.18979 0.89891 0.91252 1.14528 1.21510 0.97015 0.95808 0.99930 1.21322 0.99140 0.92572 1.05566 1.18928 0.92497 0.95178 0.89385 1.20002 1.07594 0.92030 1.29015 0.88889 1.26941 0.94217 1.05284 0.91879 1.69831 1.15212 1.40816 1.16813 0.85036 0.79199 0.75356 0.79537 1.17671 1.18782 1.18936 1.22775 0.96106 0.90329 1.10917 1.67309 1.32627 1.05326 1.09595 1.21568 0.94819 0.89858 0.95063 1.20784 0.92514 0.97114 1.03107 1.67782 1.33686 1.03519 1.15781 0.85586 0.90153 0.90177 0.82025 0.82949 0.85610 0.86517 0.89222 0.83964 0.91297 0.89130 0.91989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 9.63 113.37 1.09 -1.42 16 2 S -0.08 -1.81 22.69 -56.49 -1.28 -3.09 16 3 C 0.08 2.49 6.98 84.87 0.59 3.08 16 4 C -0.15 -4.38 9.77 22.24 0.22 -4.16 16 5 C -0.07 -2.43 9.45 22.45 0.21 -2.22 16 6 C -0.06 -2.50 5.89 -19.92 -0.12 -2.62 16 7 C -0.01 -0.55 6.66 41.91 0.28 -0.27 16 8 C -0.12 -5.48 9.38 22.30 0.21 -5.27 16 9 C -0.16 -7.92 8.74 22.63 0.20 -7.72 16 10 C 0.04 2.26 5.59 -21.17 -0.12 2.14 16 11 C -0.46 -22.22 9.05 23.37 0.21 -22.00 16 12 H 0.09 4.25 7.91 -2.91 -0.02 4.23 16 13 C 0.04 1.60 5.15 85.26 0.44 2.04 16 14 N -0.80 -37.90 10.98 21.83 0.24 -37.67 16 15 Si 0.99 33.89 29.60 68.60 2.03 35.92 16 16 H -0.25 -8.49 7.11 99.48 0.71 -7.78 16 17 H -0.26 -8.73 7.11 99.48 0.71 -8.03 16 18 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 19 C -0.04 -1.76 10.97 85.45 0.94 -0.82 16 20 N -0.44 -20.41 6.21 -182.75 -1.14 -21.55 16 21 C 0.13 4.92 6.82 42.90 0.29 5.22 16 22 C -0.08 -2.84 8.67 71.24 0.62 -2.23 16 23 N -0.49 -17.46 9.02 -178.97 -1.61 -19.07 16 24 H 0.13 1.72 8.14 -2.39 -0.02 1.71 16 25 H 0.08 1.76 8.12 -2.40 -0.02 1.74 16 26 H 0.08 1.76 8.12 -2.39 -0.02 1.74 16 27 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 28 H 0.15 4.41 6.32 -2.91 -0.02 4.39 16 29 H 0.13 4.79 6.26 -2.91 -0.02 4.77 16 30 H 0.12 5.84 6.25 -2.91 -0.02 5.82 16 31 H 0.30 12.46 8.30 -92.71 -0.77 11.69 16 32 H 0.14 6.21 8.06 -2.91 -0.02 6.18 16 33 H 0.07 2.51 8.12 -2.38 -0.02 2.50 16 34 H 0.09 3.66 5.71 -2.39 -0.01 3.64 16 35 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -55.91 310.09 4.42 -51.49 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 1.12 Total: 30.21 kcal Atomic # 6 Polarization: -41.31 SS G_CDS: 5.06 Total: -36.25 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -2.51 Total: -78.28 kcal Atomic # 14 Polarization: 33.89 SS G_CDS: 2.03 Total: 35.92 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -1.28 Total: -3.09 kcal Total: -55.91 4.42 -51.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243561792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.609 kcal (2) G-P(sol) polarization free energy of solvation -55.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds