Wall clock time and date at job start Tue Mar 31 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76199 * 99.99879 * 2 1 4 4 C 1.39479 * 119.53512 * 180.27653 * 3 2 1 5 5 C 1.36834 * 119.38588 * 180.30289 * 4 3 2 6 6 C 1.40401 * 118.49597 * 359.43319 * 5 4 3 7 7 C 1.47615 * 120.48134 * 180.25959 * 6 5 4 8 8 N 1.32665 * 120.00669 * 129.83111 * 7 6 5 9 9 C 1.31720 * 121.71030 * 179.75833 * 8 7 6 10 10 C 1.38891 * 121.51524 * 0.52725 * 9 8 7 11 11 C 1.36863 * 119.81961 * 359.74132 * 10 9 8 12 12 C 1.41123 * 118.40577 * 0.02562 * 11 10 9 13 13 C 1.40832 * 120.72603 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00019 * 154.47916 * 13 12 11 15 15 C 1.40028 * 119.99805 * 334.48475 * 13 12 11 16 16 N 1.30804 * 120.00040 * 160.97596 * 15 13 12 17 17 Si 1.86802 * 119.99964 * 340.97156 * 15 13 12 18 18 H 1.48499 * 109.46860 * 95.24658 * 17 15 13 19 19 H 1.48496 * 109.47002 * 215.24713 * 17 15 13 20 20 H 1.48504 * 109.46874 * 335.24755 * 17 15 13 21 21 C 1.39669 * 119.04853 * 0.27754 * 6 5 4 22 22 C 1.50689 * 119.74755 * 179.97438 * 21 6 5 23 23 N 1.31694 * 120.50577 * 0.02562 * 21 6 5 24 24 H 1.09009 * 109.46785 * 299.99989 * 1 2 3 25 25 H 1.09000 * 109.47287 * 59.99503 * 1 2 3 26 26 H 1.08993 * 109.47122 * 180.02562 * 1 2 3 27 27 H 1.08000 * 120.31057 * 0.02562 * 4 3 2 28 28 H 1.08005 * 120.75362 * 179.71351 * 5 4 3 29 29 H 1.07998 * 119.23833 * 180.25136 * 9 8 7 30 30 H 1.07997 * 120.08882 * 179.72460 * 10 9 8 31 31 H 1.07999 * 120.79897 * 180.02562 * 11 10 9 32 32 H 0.96995 * 119.99931 * 179.97438 * 16 15 13 33 33 H 1.09005 * 109.46985 * 85.47218 * 22 21 6 34 34 H 1.09003 * 109.47301 * 205.46512 * 22 21 6 35 35 H 1.08995 * 109.47557 * 325.47209 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4304 2.2017 -0.0059 5 6 3.6645 3.5498 0.0005 6 6 2.5634 4.4209 0.0005 7 6 2.7654 5.8832 0.0014 8 7 2.1277 6.6416 -0.8806 9 6 2.2794 7.9498 -0.9069 10 6 3.1247 8.6006 -0.0175 11 6 3.8175 7.8779 0.9157 12 6 3.6472 6.4772 0.9421 13 6 4.3356 5.6862 1.8821 14 1 3.9302 4.7322 2.1852 15 6 5.5458 6.1366 2.4238 16 7 5.9970 5.6189 3.5370 17 14 6.5158 7.4769 1.5565 18 1 6.1749 8.7959 2.1474 19 1 7.9693 7.2214 1.7212 20 1 6.1742 7.4788 0.1112 21 6 1.2740 3.8841 0.0000 22 6 0.0809 4.8045 0.0007 23 7 1.0930 2.5796 0.0001 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 4.2559 1.5052 -0.0108 28 1 4.6735 3.9351 0.0008 29 1 1.7374 8.5291 -1.6397 30 1 3.2352 9.6739 -0.0624 31 1 4.4788 8.3677 1.6152 32 1 6.8354 5.9307 3.9120 33 1 -0.1572 5.0914 -1.0236 34 1 -0.7736 4.2915 0.4421 35 1 0.3102 5.6963 0.5838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243562237.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:53 Heat of formation + Delta-G solvation = 36.917372 kcal Electronic energy + Delta-G solvation = -19774.800289 eV Core-core repulsion = 16862.506581 eV Total energy + Delta-G solvation = -2912.293708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.36681 -39.99498 -36.02498 -34.35957 -34.09068 -33.16722 -31.26983 -29.66519 -28.59867 -27.53662 -25.17458 -23.90700 -22.89969 -22.28092 -19.47402 -18.62270 -18.19966 -17.52910 -17.18209 -16.38839 -15.95260 -15.55428 -15.46867 -15.24426 -14.72827 -14.47713 -14.41658 -14.24358 -13.94906 -13.91881 -13.43503 -13.34866 -13.21596 -13.01808 -12.83162 -12.70647 -12.04187 -11.87565 -11.55855 -11.40479 -10.92170 -10.68894 -10.44462 -10.24590 -9.92539 -9.59655 -9.04233 -8.40161 -6.57879 -0.18812 0.34537 0.58380 0.64719 0.84997 1.21033 1.30439 1.36166 1.43473 2.01769 2.54720 2.71156 3.45778 3.48465 3.69230 3.95104 4.11653 4.24080 4.29115 4.37107 4.40350 4.42235 4.56665 4.63907 4.72662 4.78810 4.79915 4.98144 4.99336 5.03406 5.16283 5.26458 5.37897 5.59564 5.63169 5.75837 5.90591 6.17548 6.51403 6.60298 6.79435 7.56008 8.00482 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.019140 B = 0.005844 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.538209 B = 4790.268387 C = 5884.822661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.076 6.076 3 C 0.092 3.908 4 C -0.162 4.162 5 C -0.044 4.044 6 C -0.056 4.056 7 C 0.021 3.979 8 N -0.447 5.447 9 C -0.035 4.035 10 C -0.114 4.114 11 C -0.223 4.223 12 C 0.045 3.955 13 C -0.441 4.441 14 H 0.067 0.933 15 C 0.053 3.947 16 N -0.820 5.820 17 Si 0.962 3.038 18 H -0.252 1.252 19 H -0.275 1.275 20 H -0.256 1.256 21 C 0.133 3.867 22 C -0.073 4.073 23 N -0.493 5.493 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.127 0.873 27 H 0.153 0.847 28 H 0.132 0.868 29 H 0.164 0.836 30 H 0.145 0.855 31 H 0.112 0.888 32 H 0.300 0.700 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.906 -3.373 -5.487 8.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S 0.161 5.839 3 C -0.157 4.157 4 C -0.187 4.187 5 C -0.072 4.072 6 C -0.061 4.061 7 C -0.118 4.118 8 N -0.155 5.155 9 C -0.194 4.194 10 C -0.134 4.134 11 C -0.249 4.249 12 C 0.040 3.960 13 C -0.469 4.469 14 H 0.085 0.915 15 C -0.166 4.166 16 N -0.443 5.443 17 Si 0.786 3.214 18 H -0.178 1.178 19 H -0.201 1.201 20 H -0.180 1.180 21 C -0.008 4.008 22 C -0.130 4.130 23 N -0.207 5.207 24 H 0.098 0.902 25 H 0.102 0.898 26 H 0.145 0.855 27 H 0.171 0.829 28 H 0.150 0.850 29 H 0.181 0.819 30 H 0.163 0.837 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.455 -5.206 -5.837 9.536 hybrid contribution 1.358 2.316 0.857 2.818 sum -4.097 -2.890 -4.980 7.067 Atomic orbital electron populations 1.23416 0.92114 1.07238 1.06379 1.85343 1.10076 0.96404 1.92049 1.23333 0.91945 0.99561 1.00877 1.21451 0.96872 0.95950 1.04423 1.21423 0.99483 0.92696 0.93580 1.19296 0.93657 0.92317 1.00868 1.19305 1.03991 0.91309 0.97205 1.67214 1.20128 1.07362 1.20752 1.22416 1.03995 0.89919 1.03080 1.21769 0.95731 1.01138 0.94739 1.21282 1.06252 0.93642 1.03704 1.18573 0.92875 0.92856 0.91658 1.19346 1.04922 1.04937 1.17733 0.91537 1.26878 0.98263 0.98030 0.93436 1.69689 1.20494 1.38727 1.15401 0.85549 0.76654 0.78407 0.80801 1.17754 1.20099 1.17956 1.21620 0.94469 0.90139 0.94538 1.20438 0.93309 0.96109 1.03186 1.67767 1.33197 1.03361 1.16363 0.90160 0.89781 0.85458 0.82939 0.84971 0.81899 0.83707 0.87001 0.88891 0.89718 0.90336 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.63 113.37 1.09 -1.61 16 2 S -0.08 -2.10 22.70 -56.49 -1.28 -3.39 16 3 C 0.09 3.32 6.98 84.87 0.59 3.91 16 4 C -0.16 -6.01 9.77 22.24 0.22 -5.79 16 5 C -0.04 -1.87 8.04 22.47 0.18 -1.69 16 6 C -0.06 -2.49 5.07 -19.93 -0.10 -2.59 16 7 C 0.02 1.00 5.43 42.42 0.23 1.23 16 8 N -0.45 -19.26 8.94 -182.99 -1.64 -20.90 16 9 C -0.03 -1.31 11.16 84.87 0.95 -0.36 16 10 C -0.11 -4.28 10.03 22.10 0.22 -4.06 16 11 C -0.22 -9.81 7.22 22.66 0.16 -9.64 16 12 C 0.05 2.20 5.21 -21.02 -0.11 2.09 16 13 C -0.44 -22.78 7.72 23.34 0.18 -22.60 16 14 H 0.07 3.77 6.74 -2.91 -0.02 3.75 16 15 C 0.05 2.59 5.43 85.28 0.46 3.05 16 16 N -0.82 -41.19 13.93 21.84 0.30 -40.89 16 17 Si 0.96 38.97 24.44 68.60 1.68 40.65 16 18 H -0.25 -9.52 6.65 99.48 0.66 -8.86 16 19 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 20 H -0.26 -10.76 6.78 99.48 0.67 -10.08 16 21 C 0.13 5.41 6.82 42.92 0.29 5.70 16 22 C -0.07 -2.59 8.97 71.23 0.64 -1.95 16 23 N -0.49 -18.75 9.02 -178.90 -1.61 -20.36 16 24 H 0.08 1.91 8.12 -2.39 -0.02 1.89 16 25 H 0.08 1.93 8.12 -2.40 -0.02 1.91 16 26 H 0.13 1.94 8.14 -2.40 -0.02 1.92 16 27 H 0.15 4.82 8.06 -2.91 -0.02 4.79 16 28 H 0.13 5.70 7.36 -2.91 -0.02 5.68 16 29 H 0.16 4.92 8.06 -2.91 -0.02 4.90 16 30 H 0.15 4.23 8.06 -2.91 -0.02 4.20 16 31 H 0.11 4.77 4.29 -2.91 -0.01 4.76 16 32 H 0.30 13.44 8.30 -92.71 -0.77 12.67 16 33 H 0.08 2.85 8.14 -2.38 -0.02 2.84 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.06 2.23 7.00 -2.39 -0.02 2.22 16 Total: -1.00 -57.46 305.56 3.49 -53.97 By element: Atomic # 1 Polarization: 24.20 SS G_CDS: 1.04 Total: 25.23 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 5.01 Total: -34.31 kcal Atomic # 7 Polarization: -79.21 SS G_CDS: -2.94 Total: -82.15 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 1.68 Total: 40.65 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -1.28 Total: -3.39 kcal Total: -57.46 3.49 -53.97 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243562237.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.886 kcal (2) G-P(sol) polarization free energy of solvation -57.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds