Wall clock time and date at job start Tue Mar 31 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76203 * 100.00016 * 2 1 4 4 C 1.39365 * 119.57365 * 179.72689 * 3 2 1 5 5 C 1.37950 * 119.22386 * 179.72772 * 4 3 2 6 6 C 1.40108 * 118.40386 * 0.53191 * 5 4 3 7 7 C 1.48187 * 120.45362 * 179.75151 * 6 5 4 8 8 C 1.39981 * 119.61687 * 47.59225 * 7 6 5 9 9 C 1.38654 * 119.46098 * 179.74909 * 8 7 6 10 10 C 1.38317 * 118.69958 * 0.51343 * 9 8 7 11 11 C 1.40684 * 119.19980 * 359.73191 * 10 9 8 12 12 C 1.41351 * 119.76175 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00595 * 7.94760 * 12 11 10 14 14 C 1.40006 * 119.99620 * 187.94824 * 12 11 10 15 15 N 1.30747 * 120.00261 * 354.37157 * 14 12 11 16 16 Si 1.86807 * 119.99893 * 174.37127 * 14 12 11 17 17 H 1.48498 * 109.47233 * 89.99851 * 16 14 12 18 18 H 1.48493 * 109.47024 * 210.00267 * 16 14 12 19 19 H 1.48501 * 109.47108 * 329.99723 * 16 14 12 20 20 N 1.32273 * 119.61186 * 227.86579 * 7 6 5 21 21 C 1.39285 * 119.09116 * 359.73314 * 6 5 4 22 22 C 1.50693 * 119.65761 * 179.97438 * 21 6 5 23 23 N 1.31742 * 120.67983 * 359.97438 * 21 6 5 24 24 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47092 * 299.99792 * 1 2 3 26 26 H 1.08997 * 109.47239 * 59.99878 * 1 2 3 27 27 H 1.08003 * 120.38699 * 0.02562 * 4 3 2 28 28 H 1.08001 * 120.79896 * 180.26566 * 5 4 3 29 29 H 1.08004 * 120.27042 * 359.97438 * 8 7 6 30 30 H 1.07999 * 120.64856 * 180.24385 * 9 8 7 31 31 H 1.07998 * 120.40284 * 179.70475 * 10 9 8 32 32 H 0.97000 * 120.00457 * 179.97438 * 15 14 12 33 33 H 1.09008 * 109.47275 * 275.51076 * 22 21 6 34 34 H 1.09004 * 109.47469 * 35.50795 * 22 21 6 35 35 H 1.08994 * 109.47355 * 155.51094 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.4291 2.2022 0.0058 5 6 3.6604 3.5621 0.0000 6 6 2.5571 4.4258 -0.0001 7 6 2.7532 5.8946 -0.0006 8 6 3.6580 6.4714 -0.8995 9 6 3.8351 7.8466 -0.9008 10 6 3.1147 8.6099 0.0001 11 6 2.2240 7.9716 0.8825 12 6 1.4822 8.7401 1.8083 13 1 1.5013 9.8185 1.7531 14 6 0.7227 8.1032 2.7971 15 7 0.6106 6.8005 2.7975 16 14 -0.1304 9.1145 4.1158 17 1 -1.4937 9.4802 3.6546 18 1 -0.2275 8.3178 5.3651 19 1 0.6520 10.3496 4.3760 20 7 2.0751 6.6448 0.8521 21 6 1.2736 3.8848 0.0000 22 6 0.0779 4.8020 0.0005 23 7 1.0942 2.5797 -0.0004 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 4.2559 1.5074 0.0098 28 1 4.6676 3.9517 0.0000 29 1 4.2110 5.8507 -1.5889 30 1 4.5252 8.3122 -1.5887 31 1 3.2347 9.6829 0.0262 32 1 0.0847 6.3592 3.4828 33 1 -0.1502 5.1011 1.0236 34 1 0.2986 5.6871 -0.5962 35 1 -0.7796 4.2813 -0.4255 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243568114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:57 Heat of formation + Delta-G solvation = 58.166084 kcal Electronic energy + Delta-G solvation = -19591.636984 eV Core-core repulsion = 16680.264690 eV Total energy + Delta-G solvation = -2911.372294 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.79363 -38.01918 -33.87569 -32.65179 -32.53972 -30.49708 -29.53448 -28.63566 -27.16956 -25.59860 -23.80903 -21.94864 -21.15333 -20.59052 -17.58182 -17.33671 -16.10082 -15.89909 -14.93734 -14.63617 -14.47037 -14.32340 -13.95199 -13.52297 -13.35022 -13.24418 -12.69089 -12.41180 -12.17504 -12.07839 -11.77043 -11.55571 -11.40917 -11.23129 -11.12131 -10.84475 -10.57732 -10.41882 -10.04216 -9.69762 -9.36254 -9.20234 -9.00137 -8.28462 -7.78755 -7.69304 -7.10289 -6.51098 -4.61078 1.28821 1.69315 1.75566 2.34035 2.64521 2.90725 3.05233 3.06745 3.13755 3.88675 4.13256 4.63808 4.86125 5.21202 5.21934 5.32653 5.32848 5.43425 5.62993 5.78178 5.91019 5.99063 6.12014 6.21407 6.37412 6.45118 6.51279 6.61550 6.64248 6.86244 6.90726 6.97107 7.20503 7.26309 7.45880 7.61563 7.89678 8.12330 8.23809 8.56705 8.81260 9.92368 10.21080 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.005165 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.552198 B = 5419.686401 C = 6545.484678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.099 6.099 3 C 0.110 3.890 4 C -0.163 4.163 5 C -0.050 4.050 6 C -0.059 4.059 7 C 0.178 3.822 8 C -0.297 4.297 9 C -0.059 4.059 10 C -0.269 4.269 11 C 0.255 3.745 12 C -0.430 4.430 13 H 0.084 0.916 14 C 0.072 3.928 15 N -0.715 5.715 16 Si 0.906 3.094 17 H -0.269 1.269 18 H -0.276 1.276 19 H -0.262 1.262 20 N -0.460 5.460 21 C 0.180 3.820 22 C -0.089 4.089 23 N -0.495 5.495 24 H 0.093 0.907 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.132 0.868 28 H 0.136 0.864 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.273 0.727 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 -8.228 -3.237 8.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.139 5.861 3 C -0.138 4.138 4 C -0.189 4.189 5 C -0.078 4.078 6 C -0.064 4.064 7 C 0.032 3.968 8 C -0.321 4.321 9 C -0.083 4.083 10 C -0.292 4.292 11 C 0.130 3.870 12 C -0.461 4.461 13 H 0.102 0.898 14 C -0.153 4.153 15 N -0.336 5.336 16 Si 0.730 3.270 17 H -0.194 1.194 18 H -0.201 1.201 19 H -0.186 1.186 20 N -0.173 5.173 21 C 0.039 3.961 22 C -0.146 4.146 23 N -0.208 5.208 24 H 0.112 0.888 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.150 0.850 28 H 0.154 0.846 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.118 0.882 32 H 0.084 0.916 33 H 0.126 0.874 34 H 0.092 0.908 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.547 -10.128 -2.507 10.448 hybrid contribution 0.429 2.244 0.018 2.285 sum -0.118 -7.884 -2.489 8.268 Atomic orbital electron populations 1.23317 0.93889 1.05235 1.07013 1.85384 1.08205 0.99887 1.92668 1.22743 0.91998 0.97677 1.01397 1.21394 0.95894 0.95963 1.05663 1.21501 0.99161 0.92005 0.95148 1.19575 0.93130 0.93460 1.00226 1.19473 0.93350 0.90845 0.93135 1.21154 1.08504 0.95075 1.07367 1.20778 0.97173 0.93581 0.96746 1.21819 1.05071 0.98921 1.03428 1.18529 0.89842 0.88168 0.90463 1.19574 1.22669 0.94189 1.09638 0.89781 1.26020 0.95707 0.95046 0.98563 1.70069 1.26341 1.08894 1.28305 0.86353 0.80072 0.80635 0.79965 1.19371 1.20136 1.18592 1.68922 1.22857 1.05431 1.20063 1.21386 0.94700 0.88986 0.91002 1.20695 0.92281 0.96120 1.05537 1.67735 1.32958 1.03918 1.16160 0.88787 0.89388 0.89501 0.84993 0.84573 0.88704 0.88400 0.88205 0.91575 0.87443 0.90801 0.93005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.50 9.63 101.05 0.97 -0.53 16 2 S -0.10 -1.37 22.70 -107.50 -2.44 -3.81 16 3 C 0.11 1.90 6.97 -16.82 -0.12 1.79 16 4 C -0.16 -2.67 9.82 -39.27 -0.39 -3.06 16 5 C -0.05 -0.91 9.57 -38.99 -0.37 -1.28 16 6 C -0.06 -1.23 5.62 -104.72 -0.59 -1.82 16 7 C 0.18 4.13 5.48 -82.94 -0.45 3.68 16 8 C -0.30 -6.45 9.54 -38.78 -0.37 -6.82 16 9 C -0.06 -1.26 10.15 -39.40 -0.40 -1.66 16 10 C -0.27 -6.31 9.83 -38.63 -0.38 -6.69 16 11 C 0.26 6.60 6.54 -85.01 -0.56 6.05 16 12 C -0.43 -10.88 9.13 -37.74 -0.34 -11.23 16 13 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 14 C 0.07 1.73 5.49 -17.35 -0.10 1.64 16 15 N -0.71 -17.80 10.74 55.55 0.60 -17.20 16 16 Si 0.91 17.89 29.56 -169.99 -5.03 12.87 16 17 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 18 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 19 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 20 N -0.46 -11.77 6.28 -7.69 -0.05 -11.82 16 21 C 0.18 3.72 6.81 -82.24 -0.56 3.16 16 22 C -0.09 -1.82 8.85 36.00 0.32 -1.50 16 23 N -0.49 -9.42 9.01 -8.03 -0.07 -9.49 16 24 H 0.09 0.86 8.14 -51.92 -0.42 0.43 16 25 H 0.09 1.13 8.12 -51.92 -0.42 0.71 16 26 H 0.09 1.08 8.12 -51.92 -0.42 0.66 16 27 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 28 H 0.14 2.17 8.03 -52.49 -0.42 1.75 16 29 H 0.09 1.84 7.99 -52.48 -0.42 1.42 16 30 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 32 H 0.27 6.28 8.29 -40.82 -0.34 5.94 16 33 H 0.11 2.40 7.38 -51.92 -0.38 2.01 16 34 H 0.07 1.61 6.98 -51.93 -0.36 1.25 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 316.27 15.07 4.77 4.77 Total: -1.00 -27.19 316.27 -9.65 -36.84 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -4.09 Total: 6.13 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -3.33 Total: -18.28 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.48 Total: -38.51 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.44 Total: -3.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -27.19 -9.65 -36.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243568114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.004 kcal (2) G-P(sol) polarization free energy of solvation -27.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds