Wall clock time and date at job start Tue Mar 31 2020 06:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76203 * 100.00016 * 2 1 4 4 C 1.39365 * 119.57365 * 179.72689 * 3 2 1 5 5 C 1.37950 * 119.22386 * 179.72772 * 4 3 2 6 6 C 1.40108 * 118.40386 * 0.53191 * 5 4 3 7 7 C 1.48187 * 120.45362 * 179.75151 * 6 5 4 8 8 C 1.39981 * 119.61687 * 47.59225 * 7 6 5 9 9 C 1.38654 * 119.46098 * 179.74909 * 8 7 6 10 10 C 1.38317 * 118.69958 * 0.51343 * 9 8 7 11 11 C 1.40684 * 119.19980 * 359.73191 * 10 9 8 12 12 C 1.41351 * 119.76175 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00595 * 7.94760 * 12 11 10 14 14 C 1.40006 * 119.99620 * 187.94824 * 12 11 10 15 15 N 1.30747 * 120.00261 * 354.37157 * 14 12 11 16 16 Si 1.86807 * 119.99893 * 174.37127 * 14 12 11 17 17 H 1.48498 * 109.47233 * 89.99851 * 16 14 12 18 18 H 1.48493 * 109.47024 * 210.00267 * 16 14 12 19 19 H 1.48501 * 109.47108 * 329.99723 * 16 14 12 20 20 N 1.32273 * 119.61186 * 227.86579 * 7 6 5 21 21 C 1.39285 * 119.09116 * 359.73314 * 6 5 4 22 22 C 1.50693 * 119.65761 * 179.97438 * 21 6 5 23 23 N 1.31742 * 120.67983 * 359.97438 * 21 6 5 24 24 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47092 * 299.99792 * 1 2 3 26 26 H 1.08997 * 109.47239 * 59.99878 * 1 2 3 27 27 H 1.08003 * 120.38699 * 0.02562 * 4 3 2 28 28 H 1.08001 * 120.79896 * 180.26566 * 5 4 3 29 29 H 1.08004 * 120.27042 * 359.97438 * 8 7 6 30 30 H 1.07999 * 120.64856 * 180.24385 * 9 8 7 31 31 H 1.07998 * 120.40284 * 179.70475 * 10 9 8 32 32 H 0.97000 * 120.00457 * 179.97438 * 15 14 12 33 33 H 1.09008 * 109.47275 * 275.51076 * 22 21 6 34 34 H 1.09004 * 109.47469 * 35.50795 * 22 21 6 35 35 H 1.08994 * 109.47355 * 155.51094 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.4291 2.2022 0.0058 5 6 3.6604 3.5621 0.0000 6 6 2.5571 4.4258 -0.0001 7 6 2.7532 5.8946 -0.0006 8 6 3.6580 6.4714 -0.8995 9 6 3.8351 7.8466 -0.9008 10 6 3.1147 8.6099 0.0001 11 6 2.2240 7.9716 0.8825 12 6 1.4822 8.7401 1.8083 13 1 1.5013 9.8185 1.7531 14 6 0.7227 8.1032 2.7971 15 7 0.6106 6.8005 2.7975 16 14 -0.1304 9.1145 4.1158 17 1 -1.4937 9.4802 3.6546 18 1 -0.2275 8.3178 5.3651 19 1 0.6520 10.3496 4.3760 20 7 2.0751 6.6448 0.8521 21 6 1.2736 3.8848 0.0000 22 6 0.0779 4.8020 0.0005 23 7 1.0942 2.5797 -0.0004 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 4.2559 1.5074 0.0098 28 1 4.6676 3.9517 0.0000 29 1 4.2110 5.8507 -1.5889 30 1 4.5252 8.3122 -1.5887 31 1 3.2347 9.6829 0.0262 32 1 0.0847 6.3592 3.4828 33 1 -0.1502 5.1011 1.0236 34 1 0.2986 5.6871 -0.5962 35 1 -0.7796 4.2813 -0.4255 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243568114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:57 Heat of formation + Delta-G solvation = 45.168826 kcal Electronic energy + Delta-G solvation = -19592.200587 eV Core-core repulsion = 16680.264690 eV Total energy + Delta-G solvation = -2911.935898 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27100 -39.73161 -35.63579 -34.20847 -34.00660 -32.26694 -31.15356 -29.69815 -28.72927 -27.35894 -25.32908 -23.56704 -22.78853 -22.21956 -19.35394 -18.63300 -17.68515 -17.39595 -16.49981 -16.31791 -15.99577 -15.68674 -15.52482 -14.98146 -14.60671 -14.43153 -14.26999 -14.08489 -13.70720 -13.39410 -13.34347 -13.04155 -12.93573 -12.83394 -12.76861 -12.61552 -12.19490 -11.76877 -11.58534 -11.30019 -10.96921 -10.65214 -10.41832 -10.03736 -9.47456 -9.45557 -8.41033 -8.28023 -6.48795 -0.18546 0.27658 0.56132 0.92259 1.18050 1.25936 1.41823 1.51221 1.55623 2.23142 2.64625 2.87110 3.43987 3.67384 3.85664 3.91578 4.12367 4.24724 4.34548 4.37445 4.41427 4.62421 4.69270 4.75178 4.83026 4.89350 4.92127 4.96971 4.99223 5.20005 5.28531 5.35703 5.46930 5.67475 5.69256 5.86168 6.14782 6.27171 6.73694 6.79640 6.96748 8.13232 8.44383 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.005165 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.552198 B = 5419.686401 C = 6545.484678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.065 6.065 3 C 0.096 3.904 4 C -0.157 4.157 5 C -0.047 4.047 6 C -0.091 4.091 7 C 0.163 3.837 8 C -0.296 4.296 9 C -0.056 4.056 10 C -0.291 4.291 11 C 0.223 3.777 12 C -0.465 4.465 13 H 0.087 0.913 14 C 0.032 3.968 15 N -0.745 5.745 16 Si 0.979 3.021 17 H -0.263 1.263 18 H -0.273 1.273 19 H -0.258 1.258 20 N -0.484 5.484 21 C 0.161 3.839 22 C -0.073 4.073 23 N -0.502 5.502 24 H 0.127 0.873 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.168 0.832 28 H 0.155 0.845 29 H 0.121 0.879 30 H 0.135 0.865 31 H 0.110 0.890 32 H 0.276 0.724 33 H 0.083 0.917 34 H 0.050 0.950 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.077 -9.956 -3.545 10.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.173 5.827 3 C -0.153 4.153 4 C -0.182 4.182 5 C -0.075 4.075 6 C -0.096 4.096 7 C 0.019 3.981 8 C -0.319 4.319 9 C -0.080 4.080 10 C -0.313 4.313 11 C 0.098 3.902 12 C -0.496 4.496 13 H 0.105 0.895 14 C -0.190 4.190 15 N -0.367 5.367 16 Si 0.800 3.200 17 H -0.188 1.188 18 H -0.197 1.197 19 H -0.182 1.182 20 N -0.197 5.197 21 C 0.021 3.979 22 C -0.131 4.131 23 N -0.216 5.216 24 H 0.146 0.854 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.186 0.814 28 H 0.173 0.827 29 H 0.139 0.861 30 H 0.153 0.847 31 H 0.128 0.872 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.215 -11.861 -2.837 12.197 hybrid contribution 0.261 2.564 0.002 2.577 sum 0.476 -9.297 -2.835 9.731 Atomic orbital electron populations 1.23426 0.92657 1.07212 1.06258 1.85276 1.09521 0.96125 1.91786 1.23482 0.92322 0.99622 0.99869 1.21790 0.96683 0.95844 1.03864 1.21739 0.99118 0.92460 0.94139 1.19639 0.94370 0.92716 1.02914 1.19955 0.93217 0.92091 0.92881 1.21517 1.07880 0.95627 1.06924 1.21178 0.96871 0.93542 0.96412 1.22009 1.05556 0.99719 1.04034 1.18985 0.90862 0.88905 0.91467 1.19878 1.24230 0.94523 1.11009 0.89510 1.26813 0.95929 0.96046 1.00247 1.70182 1.27099 1.10346 1.29067 0.85250 0.78879 0.78919 0.76953 1.18770 1.19739 1.18206 1.68900 1.23969 1.05572 1.21301 1.21310 0.94489 0.89799 0.92316 1.20430 0.93417 0.95598 1.03654 1.67758 1.33840 1.03282 1.16673 0.85426 0.90423 0.89964 0.81448 0.82704 0.86081 0.84732 0.87228 0.91375 0.89835 0.93148 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.63 113.37 1.09 -1.62 16 2 S -0.06 -1.60 22.70 -56.49 -1.28 -2.88 16 3 C 0.10 3.12 6.97 84.86 0.59 3.71 16 4 C -0.16 -4.72 9.82 22.47 0.22 -4.49 16 5 C -0.05 -1.61 9.57 22.66 0.22 -1.40 16 6 C -0.09 -3.84 5.62 -19.93 -0.11 -3.95 16 7 C 0.16 7.74 5.48 42.15 0.23 7.97 16 8 C -0.30 -12.66 9.54 22.79 0.22 -12.44 16 9 C -0.06 -2.36 10.15 22.39 0.23 -2.13 16 10 C -0.29 -13.85 9.83 22.89 0.23 -13.62 16 11 C 0.22 12.01 6.54 40.25 0.26 12.27 16 12 C -0.47 -24.53 9.13 23.46 0.21 -24.32 16 13 H 0.09 4.31 7.85 -2.91 -0.02 4.28 16 14 C 0.03 1.58 5.49 85.28 0.47 2.05 16 15 N -0.75 -38.68 10.74 21.83 0.23 -38.44 16 16 Si 0.98 37.58 29.56 68.60 2.03 39.61 16 17 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 18 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 19 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 20 N -0.48 -25.77 6.28 -178.23 -1.12 -26.89 16 21 C 0.16 6.76 6.81 42.82 0.29 7.05 16 22 C -0.07 -3.14 8.85 71.23 0.63 -2.51 16 23 N -0.50 -18.82 9.01 -179.31 -1.62 -20.44 16 24 H 0.13 1.87 8.14 -2.40 -0.02 1.85 16 25 H 0.08 1.87 8.12 -2.40 -0.02 1.85 16 26 H 0.08 1.88 8.12 -2.40 -0.02 1.86 16 27 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16 28 H 0.16 4.60 8.03 -2.91 -0.02 4.57 16 29 H 0.12 4.44 7.99 -2.91 -0.02 4.42 16 30 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 31 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 32 H 0.28 13.20 8.29 -92.71 -0.77 12.43 16 33 H 0.08 3.96 7.38 -2.38 -0.02 3.95 16 34 H 0.05 2.33 6.98 -2.38 -0.02 2.32 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -60.85 316.27 4.12 -56.73 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 1.10 Total: 25.73 kcal Atomic # 6 Polarization: -38.20 SS G_CDS: 4.78 Total: -33.42 kcal Atomic # 7 Polarization: -83.27 SS G_CDS: -2.50 Total: -85.77 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -1.28 Total: -2.88 kcal Total: -60.85 4.12 -56.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243568114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.899 kcal (2) G-P(sol) polarization free energy of solvation -60.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds