Wall clock time and date at job start Tue Mar 31 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76202 * 102.99838 * 2 1 4 4 C 1.39333 * 119.58217 * 180.02562 * 3 2 1 5 5 C 1.37988 * 119.22624 * 179.97438 * 4 3 2 6 6 C 1.40044 * 118.40374 * 359.97438 * 5 4 3 7 7 C 1.48298 * 120.44840 * 180.02562 * 6 5 4 8 8 C 1.40081 * 120.82651 * 235.98532 * 7 6 5 9 9 C 1.38453 * 119.42195 * 179.97438 * 8 7 6 10 10 N 1.31504 * 121.15273 * 0.02562 * 9 8 7 11 11 C 1.33656 * 121.80174 * 359.97438 * 10 9 8 12 12 C 1.41430 * 119.77914 * 180.02562 * 11 10 9 13 13 H 1.08008 * 120.00345 * 180.02562 * 12 11 10 14 14 C 1.40034 * 119.99748 * 359.97438 * 12 11 10 15 15 N 1.30732 * 120.00352 * 0.02562 * 14 12 11 16 16 Si 1.86810 * 119.99672 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47001 * 60.00127 * 16 14 12 18 18 H 1.48502 * 109.46596 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47008 * 299.99770 * 16 14 12 20 20 C 1.39374 * 120.82202 * 55.71071 * 7 6 5 21 21 C 1.39215 * 119.10004 * 359.97438 * 6 5 4 22 22 C 1.50696 * 119.65349 * 180.27827 * 21 6 5 23 23 N 1.31771 * 120.68888 * 0.02562 * 21 6 5 24 24 H 1.09006 * 109.47178 * 60.00218 * 1 2 3 25 25 H 1.09003 * 109.46774 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47051 * 299.99793 * 1 2 3 27 27 H 1.08006 * 120.38483 * 359.95446 * 4 3 2 28 28 H 1.07994 * 120.79793 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.28534 * 359.95603 * 8 7 6 30 30 H 1.08000 * 119.42688 * 179.97438 * 9 8 7 31 31 H 0.97001 * 120.00435 * 180.02562 * 15 14 12 32 32 H 1.07992 * 120.58786 * 0.02562 * 20 7 6 33 33 H 1.09003 * 109.47190 * 275.11477 * 22 21 6 34 34 H 1.08994 * 109.47523 * 35.11812 * 22 21 6 35 35 H 1.09003 * 109.47026 * 155.11634 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5457 2.1146 -0.0005 5 6 3.8477 3.4610 -0.0011 6 6 2.7915 4.3806 -0.0016 7 6 3.0642 5.8383 -0.0028 8 6 2.5350 6.6684 0.9938 9 6 2.8086 8.0253 0.9649 10 7 3.5563 8.5485 0.0180 11 6 4.0852 7.8010 -0.9556 12 6 4.8836 8.4084 -1.9526 13 1 5.3124 7.8078 -2.7412 14 6 5.1172 9.7887 -1.9177 15 7 4.5977 10.5157 -0.9635 16 14 6.1711 10.5911 -3.2349 17 1 5.5555 10.3649 -4.5673 18 1 6.2645 12.0499 -2.9734 19 1 7.5316 9.9962 -3.2107 20 6 3.8582 6.4155 -0.9922 21 6 1.4821 3.9078 -0.0021 22 6 0.3360 4.8863 -0.0090 23 7 1.2344 2.6136 -0.0016 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.3352 1.3775 -0.0002 28 1 4.8738 3.7975 -0.0019 29 1 1.9186 6.2535 1.7776 30 1 2.4003 8.6654 1.7329 31 1 4.7592 11.4719 -0.9395 32 1 4.2878 5.8087 -1.7755 33 1 0.1171 5.1967 1.0127 34 1 0.6067 5.7587 -0.6037 35 1 -0.5447 4.4112 -0.4411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243589623.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:13 Heat of formation + Delta-G solvation = 55.282011 kcal Electronic energy + Delta-G solvation = -19062.717411 eV Core-core repulsion = 16151.220054 eV Total energy + Delta-G solvation = -2911.497357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.04701 -38.04045 -34.03179 -32.93776 -32.87348 -30.10596 -29.64348 -28.79658 -27.41355 -25.69922 -23.96563 -22.03164 -21.35437 -20.77159 -17.62407 -17.50171 -16.29015 -15.82053 -15.12165 -14.75057 -14.61123 -14.29232 -14.03325 -13.78035 -13.52259 -13.47608 -12.82252 -12.58786 -12.38866 -12.32542 -12.23681 -11.87897 -11.60723 -11.22519 -11.15633 -10.91816 -10.57670 -10.50952 -10.14910 -9.76169 -9.46276 -9.36908 -9.24643 -8.21776 -7.73877 -7.65024 -7.35209 -6.47239 -4.60828 1.08598 1.43948 1.49280 2.23222 2.69276 2.79894 3.04607 3.06589 3.14270 3.87427 3.89960 4.57795 4.67097 5.02460 5.07330 5.12193 5.12346 5.25124 5.47730 5.67164 5.72541 5.84411 5.87793 5.94203 6.00262 6.17538 6.34036 6.36069 6.49819 6.62677 6.79051 6.80694 7.04418 7.22342 7.43027 7.57229 7.88332 7.96163 8.14300 8.56922 8.82835 10.03172 10.24495 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.031861 B = 0.003591 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.594463 B = 7794.536670 C = 8271.292222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.097 6.097 3 C 0.109 3.891 4 C -0.154 4.154 5 C -0.051 4.051 6 C -0.067 4.067 7 C 0.003 3.997 8 C -0.300 4.300 9 C 0.126 3.874 10 N -0.482 5.482 11 C 0.256 3.744 12 C -0.431 4.431 13 H 0.083 0.917 14 C 0.069 3.931 15 N -0.714 5.714 16 Si 0.907 3.093 17 H -0.264 1.264 18 H -0.277 1.277 19 H -0.264 1.264 20 C -0.252 4.252 21 C 0.150 3.850 22 C -0.097 4.097 23 N -0.491 5.491 24 H 0.085 0.915 25 H 0.099 0.901 26 H 0.085 0.915 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.274 0.726 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 -12.690 1.459 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.140 5.860 3 C -0.139 4.139 4 C -0.180 4.180 5 C -0.078 4.078 6 C -0.072 4.072 7 C -0.004 4.004 8 C -0.323 4.323 9 C -0.039 4.039 10 N -0.195 5.195 11 C 0.131 3.869 12 C -0.462 4.462 13 H 0.101 0.899 14 C -0.156 4.156 15 N -0.335 5.335 16 Si 0.731 3.269 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.189 1.189 20 C -0.275 4.275 21 C 0.009 3.991 22 C -0.155 4.155 23 N -0.204 5.204 24 H 0.104 0.896 25 H 0.117 0.883 26 H 0.104 0.896 27 H 0.153 0.847 28 H 0.159 0.841 29 H 0.113 0.887 30 H 0.138 0.862 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.716 -12.894 1.505 13.811 hybrid contribution 0.376 0.765 -0.493 0.985 sum -4.340 -12.129 1.012 12.922 Atomic orbital electron populations 1.23378 0.93798 1.05596 1.06672 1.85298 1.07841 1.00287 1.92537 1.22793 0.92103 0.97524 1.01523 1.21480 0.95440 0.96647 1.04402 1.21635 0.99887 0.91590 0.94690 1.19871 0.93012 0.94705 0.99578 1.18351 0.97341 0.88835 0.95893 1.21258 1.12499 0.95298 1.03230 1.22451 0.93979 0.91484 0.95989 1.68741 1.10937 1.36987 1.02838 1.18515 0.90139 0.87374 0.90829 1.19608 1.25470 0.92722 1.08377 0.89856 1.26063 0.95587 0.97782 0.96218 1.70111 1.30371 1.06618 1.26405 0.86390 0.80796 0.78307 0.81376 1.18884 1.20155 1.18888 1.21807 1.07269 0.96641 1.01776 1.21310 0.93874 0.89929 0.93963 1.20726 0.94527 0.96909 1.03289 1.67725 1.34715 1.02239 1.15688 0.89591 0.88285 0.89609 0.84668 0.84144 0.88702 0.86234 0.91457 0.88230 0.90336 0.89670 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 10.01 101.05 1.01 -0.24 16 2 S -0.10 -1.20 22.55 -107.50 -2.42 -3.63 16 3 C 0.11 1.68 7.00 -16.84 -0.12 1.56 16 4 C -0.15 -2.29 9.82 -39.27 -0.39 -2.67 16 5 C -0.05 -0.84 9.78 -39.00 -0.38 -1.22 16 6 C -0.07 -1.25 5.46 -104.72 -0.57 -1.82 16 7 C 0.00 0.06 4.52 -104.65 -0.47 -0.41 16 8 C -0.30 -6.33 8.43 -38.81 -0.33 -6.66 16 9 C 0.13 2.92 11.16 -17.61 -0.20 2.73 16 10 N -0.48 -12.85 7.85 -11.22 -0.09 -12.94 16 11 C 0.26 6.75 6.55 -85.03 -0.56 6.20 16 12 C -0.43 -11.21 9.14 -37.69 -0.34 -11.55 16 13 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 14 C 0.07 1.72 5.50 -17.35 -0.10 1.62 16 15 N -0.71 -18.58 11.46 55.55 0.64 -17.95 16 16 Si 0.91 18.16 29.56 -169.99 -5.02 13.13 16 17 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 18 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 20 C -0.25 -5.92 9.47 -38.33 -0.36 -6.29 16 21 C 0.15 2.61 6.79 -82.26 -0.56 2.05 16 22 C -0.10 -1.51 8.74 36.00 0.31 -1.19 16 23 N -0.49 -8.14 9.32 -8.05 -0.08 -8.21 16 24 H 0.09 0.90 8.14 -51.92 -0.42 0.48 16 25 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 26 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 28 H 0.14 2.15 8.06 -52.49 -0.42 1.73 16 29 H 0.09 1.80 7.39 -52.48 -0.39 1.41 16 30 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 31 H 0.27 6.48 8.29 -40.82 -0.34 6.14 16 32 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 33 H 0.08 1.13 7.61 -51.93 -0.39 0.74 16 34 H 0.08 1.45 7.00 -51.93 -0.36 1.09 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 317.38 15.07 4.78 4.78 Total: -1.00 -28.50 317.38 -9.31 -37.81 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -4.07 Total: 4.90 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -3.05 Total: -17.90 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.47 Total: -39.09 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.02 Total: 13.13 kcal Atomic # 16 Polarization: -1.20 SS G_CDS: -2.42 Total: -3.63 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -28.50 -9.31 -37.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589623.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.091 kcal (2) G-P(sol) polarization free energy of solvation -28.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds