Wall clock time and date at job start Tue Mar 31 2020 06:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76202 * 102.99838 * 2 1 4 4 C 1.39333 * 119.58217 * 180.02562 * 3 2 1 5 5 C 1.37988 * 119.22624 * 179.97438 * 4 3 2 6 6 C 1.40044 * 118.40374 * 359.97438 * 5 4 3 7 7 C 1.48298 * 120.44840 * 180.02562 * 6 5 4 8 8 C 1.40081 * 120.82651 * 235.98532 * 7 6 5 9 9 C 1.38453 * 119.42195 * 179.97438 * 8 7 6 10 10 N 1.31504 * 121.15273 * 0.02562 * 9 8 7 11 11 C 1.33656 * 121.80174 * 359.97438 * 10 9 8 12 12 C 1.41430 * 119.77914 * 180.02562 * 11 10 9 13 13 H 1.08008 * 120.00345 * 180.02562 * 12 11 10 14 14 C 1.40034 * 119.99748 * 359.97438 * 12 11 10 15 15 N 1.30732 * 120.00352 * 0.02562 * 14 12 11 16 16 Si 1.86810 * 119.99672 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47001 * 60.00127 * 16 14 12 18 18 H 1.48502 * 109.46596 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47008 * 299.99770 * 16 14 12 20 20 C 1.39374 * 120.82202 * 55.71071 * 7 6 5 21 21 C 1.39215 * 119.10004 * 359.97438 * 6 5 4 22 22 C 1.50696 * 119.65349 * 180.27827 * 21 6 5 23 23 N 1.31771 * 120.68888 * 0.02562 * 21 6 5 24 24 H 1.09006 * 109.47178 * 60.00218 * 1 2 3 25 25 H 1.09003 * 109.46774 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47051 * 299.99793 * 1 2 3 27 27 H 1.08006 * 120.38483 * 359.95446 * 4 3 2 28 28 H 1.07994 * 120.79793 * 180.02562 * 5 4 3 29 29 H 1.08003 * 120.28534 * 359.95603 * 8 7 6 30 30 H 1.08000 * 119.42688 * 179.97438 * 9 8 7 31 31 H 0.97001 * 120.00435 * 180.02562 * 15 14 12 32 32 H 1.07992 * 120.58786 * 0.02562 * 20 7 6 33 33 H 1.09003 * 109.47190 * 275.11477 * 22 21 6 34 34 H 1.08994 * 109.47523 * 35.11812 * 22 21 6 35 35 H 1.09003 * 109.47026 * 155.11634 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5457 2.1146 -0.0005 5 6 3.8477 3.4610 -0.0011 6 6 2.7915 4.3806 -0.0016 7 6 3.0642 5.8383 -0.0028 8 6 2.5350 6.6684 0.9938 9 6 2.8086 8.0253 0.9649 10 7 3.5563 8.5485 0.0180 11 6 4.0852 7.8010 -0.9556 12 6 4.8836 8.4084 -1.9526 13 1 5.3124 7.8078 -2.7412 14 6 5.1172 9.7887 -1.9177 15 7 4.5977 10.5157 -0.9635 16 14 6.1711 10.5911 -3.2349 17 1 5.5555 10.3649 -4.5673 18 1 6.2645 12.0499 -2.9734 19 1 7.5316 9.9962 -3.2107 20 6 3.8582 6.4155 -0.9922 21 6 1.4821 3.9078 -0.0021 22 6 0.3360 4.8863 -0.0090 23 7 1.2344 2.6136 -0.0016 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.3352 1.3775 -0.0002 28 1 4.8738 3.7975 -0.0019 29 1 1.9186 6.2535 1.7776 30 1 2.4003 8.6654 1.7329 31 1 4.7592 11.4719 -0.9395 32 1 4.2878 5.8087 -1.7755 33 1 0.1171 5.1967 1.0127 34 1 0.6067 5.7587 -0.6037 35 1 -0.5447 4.4112 -0.4411 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243589623.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:13 Heat of formation + Delta-G solvation = 40.762022 kcal Electronic energy + Delta-G solvation = -19063.347045 eV Core-core repulsion = 16151.220054 eV Total energy + Delta-G solvation = -2912.126991 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.37524 -39.79127 -35.74972 -34.53883 -34.12637 -31.93055 -31.15066 -29.68069 -28.71281 -27.53648 -25.39858 -23.42665 -23.04888 -22.41088 -19.31408 -18.69844 -17.65939 -17.45194 -16.62692 -16.25388 -16.02886 -15.76542 -15.52828 -15.15978 -14.59084 -14.45607 -14.30049 -14.18783 -13.98512 -13.53550 -13.41966 -13.17613 -13.06663 -12.83643 -12.73807 -12.66749 -12.21134 -11.82803 -11.55496 -11.28312 -11.03067 -10.73165 -10.49835 -9.86204 -9.59045 -9.51076 -8.47565 -8.29894 -6.53497 -0.23540 0.17632 0.45367 0.89482 1.08352 1.29789 1.40773 1.52800 1.54526 2.22571 2.57385 2.84393 3.35745 3.68958 3.80557 3.87773 4.06311 4.17763 4.24047 4.32982 4.37338 4.50027 4.61796 4.66256 4.75134 4.81461 4.92069 4.93385 4.94678 5.11597 5.17414 5.24056 5.42535 5.49293 5.65845 5.82023 6.09756 6.26145 6.66619 6.71935 6.93850 8.18074 8.44333 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.031861 B = 0.003591 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.594463 B = 7794.536670 C = 8271.292222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.076 6.076 3 C 0.100 3.900 4 C -0.153 4.153 5 C -0.052 4.052 6 C -0.099 4.099 7 C 0.017 3.983 8 C -0.286 4.286 9 C 0.109 3.891 10 N -0.519 5.519 11 C 0.228 3.772 12 C -0.470 4.470 13 H 0.087 0.913 14 C 0.026 3.974 15 N -0.755 5.755 16 Si 0.985 3.015 17 H -0.259 1.259 18 H -0.268 1.268 19 H -0.259 1.259 20 C -0.270 4.270 21 C 0.145 3.855 22 C -0.093 4.093 23 N -0.497 5.497 24 H 0.081 0.919 25 H 0.130 0.870 26 H 0.083 0.917 27 H 0.164 0.836 28 H 0.146 0.854 29 H 0.121 0.879 30 H 0.140 0.860 31 H 0.280 0.720 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.103 -14.877 1.470 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.162 5.838 3 C -0.148 4.148 4 C -0.178 4.178 5 C -0.079 4.079 6 C -0.104 4.104 7 C 0.010 3.990 8 C -0.309 4.309 9 C -0.055 4.055 10 N -0.233 5.233 11 C 0.103 3.897 12 C -0.502 4.502 13 H 0.105 0.895 14 C -0.196 4.196 15 N -0.377 5.377 16 Si 0.805 3.195 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.293 4.293 21 C 0.005 3.995 22 C -0.150 4.150 23 N -0.210 5.210 24 H 0.100 0.900 25 H 0.148 0.852 26 H 0.102 0.898 27 H 0.182 0.818 28 H 0.164 0.836 29 H 0.139 0.861 30 H 0.158 0.842 31 H 0.090 0.910 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.184 -15.106 1.534 16.044 hybrid contribution 0.378 1.155 -0.390 1.276 sum -4.807 -13.951 1.144 14.800 Atomic orbital electron populations 1.23512 0.91901 1.07545 1.06349 1.85281 1.09864 0.97037 1.91633 1.23448 0.92420 0.99259 0.99713 1.21771 0.96224 0.96405 1.03401 1.21769 0.99752 0.92248 0.94137 1.19762 0.94375 0.93234 1.03056 1.18547 0.95382 0.90608 0.94482 1.21520 1.11500 0.94557 1.03310 1.22887 0.93754 0.92899 0.95931 1.68684 1.12408 1.38273 1.03940 1.18900 0.90758 0.88709 0.91291 1.19963 1.26969 0.94019 1.09216 0.89468 1.26956 0.96491 0.97801 0.98363 1.70207 1.31989 1.07093 1.28399 0.85226 0.78774 0.77379 0.78117 1.18369 1.19217 1.18279 1.21871 1.08683 0.95865 1.02892 1.21475 0.93717 0.90732 0.93607 1.20695 0.94672 0.95937 1.03713 1.67824 1.35039 1.01839 1.16307 0.89983 0.85195 0.89822 0.81833 0.83626 0.86116 0.84220 0.90981 0.87930 0.89206 0.91724 0.89763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.08 10.01 113.37 1.13 -0.95 16 2 S -0.08 -1.64 22.55 -56.49 -1.27 -2.92 16 3 C 0.10 2.84 7.00 84.85 0.59 3.44 16 4 C -0.15 -4.20 9.82 22.47 0.22 -3.98 16 5 C -0.05 -1.66 9.78 22.65 0.22 -1.44 16 6 C -0.10 -3.63 5.46 -19.93 -0.11 -3.74 16 7 C 0.02 0.73 4.52 -19.88 -0.09 0.64 16 8 C -0.29 -12.03 8.43 22.77 0.19 -11.84 16 9 C 0.11 5.14 11.16 84.79 0.95 6.08 16 10 N -0.52 -28.68 7.85 -189.40 -1.49 -30.17 16 11 C 0.23 12.55 6.55 40.19 0.26 12.81 16 12 C -0.47 -25.48 9.14 23.49 0.21 -25.27 16 13 H 0.09 4.42 7.85 -2.91 -0.02 4.39 16 14 C 0.03 1.31 5.50 85.29 0.47 1.78 16 15 N -0.75 -40.62 11.46 21.84 0.25 -40.37 16 16 Si 0.98 37.91 29.56 68.60 2.03 39.94 16 17 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 18 H -0.27 -9.79 7.11 99.48 0.71 -9.08 16 19 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 20 C -0.27 -13.14 9.47 23.08 0.22 -12.92 16 21 C 0.14 4.87 6.79 42.80 0.29 5.16 16 22 C -0.09 -2.78 8.74 71.23 0.62 -2.15 16 23 N -0.50 -15.47 9.32 -179.38 -1.67 -17.14 16 24 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.13 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.16 3.48 8.06 -2.91 -0.02 3.46 16 28 H 0.15 4.38 8.06 -2.91 -0.02 4.36 16 29 H 0.12 4.40 7.39 -2.91 -0.02 4.38 16 30 H 0.14 5.78 8.06 -2.91 -0.02 5.75 16 31 H 0.28 13.60 8.29 -92.71 -0.77 12.83 16 32 H 0.10 4.75 8.06 -2.91 -0.02 4.73 16 33 H 0.09 2.45 7.61 -2.39 -0.02 2.43 16 34 H 0.06 2.19 7.00 -2.39 -0.02 2.18 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -63.15 317.38 4.14 -59.01 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 1.10 Total: 24.03 kcal Atomic # 6 Polarization: -37.57 SS G_CDS: 5.19 Total: -32.38 kcal Atomic # 7 Polarization: -84.78 SS G_CDS: -2.91 Total: -87.69 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -1.27 Total: -2.92 kcal Total: -63.15 4.14 -59.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243589623.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.777 kcal (2) G-P(sol) polarization free energy of solvation -63.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds