Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76204 * 99.99908 * 2 1 4 4 C 1.39474 * 119.53726 * 179.73040 * 3 2 1 5 5 C 1.36853 * 119.38393 * 179.75122 * 4 3 2 6 6 C 1.40377 * 118.49675 * 0.50697 * 5 4 3 7 7 C 1.47670 * 120.47800 * 179.71047 * 6 5 4 8 8 C 1.39444 * 120.79480 * 65.01865 * 7 6 5 9 9 N 1.31617 * 120.64123 * 180.02562 * 8 7 6 10 10 C 1.32268 * 122.52045 * 359.97438 * 9 8 7 11 11 C 1.36405 * 121.53787 * 0.02562 * 10 9 8 12 12 C 1.41161 * 119.11743 * 359.69771 * 11 10 9 13 13 C 1.40835 * 121.11556 * 180.28165 * 12 11 10 14 14 H 1.07993 * 120.00155 * 204.47600 * 13 12 11 15 15 C 1.40131 * 119.99815 * 24.47350 * 13 12 11 16 16 N 1.30714 * 120.00418 * 14.05359 * 15 13 12 17 17 Si 1.86799 * 119.99997 * 194.05254 * 15 13 12 18 18 H 1.48498 * 109.47506 * 94.97654 * 17 15 13 19 19 H 1.48503 * 109.47215 * 214.97606 * 17 15 13 20 20 H 1.48507 * 109.46946 * 334.97280 * 17 15 13 21 21 C 1.39670 * 119.05136 * 359.73403 * 6 5 4 22 22 C 1.50700 * 119.74957 * 179.97438 * 21 6 5 23 23 N 1.31702 * 120.51013 * 0.02562 * 21 6 5 24 24 H 1.08999 * 109.47394 * 60.00537 * 1 2 3 25 25 H 1.09005 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47566 * 299.99835 * 1 2 3 27 27 H 1.07998 * 120.30874 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.74869 * 180.24531 * 5 4 3 29 29 H 1.07994 * 119.67575 * 0.02562 * 8 7 6 30 30 H 1.07992 * 119.23123 * 179.97438 * 10 9 8 31 31 H 1.07992 * 120.44171 * 179.97438 * 11 10 9 32 32 H 0.96998 * 120.00406 * 180.02562 * 16 15 13 33 33 H 1.08996 * 109.46871 * 270.02140 * 22 21 6 34 34 H 1.09006 * 109.46897 * 30.02180 * 22 21 6 35 35 H 1.08998 * 109.47401 * 150.01885 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.4304 2.2017 0.0057 5 6 3.6644 3.5501 0.0005 6 6 2.5634 4.4210 0.0005 7 6 2.7655 5.8838 0.0014 8 6 3.3649 6.5223 -1.0837 9 7 3.5440 7.8262 -1.0795 10 6 3.1731 8.5917 -0.0666 11 6 2.5779 8.0675 1.0433 12 6 2.3480 6.6762 1.1071 13 6 1.7314 6.0912 2.2300 14 1 1.9051 5.0505 2.4605 15 6 0.8924 6.8595 3.0482 16 7 0.4609 8.0217 2.6340 17 14 0.3905 6.2227 4.7311 18 1 1.3084 6.7708 5.7618 19 1 -0.9999 6.6516 5.0282 20 1 0.4638 4.7395 4.7412 21 6 1.2740 3.8841 0.0000 22 6 0.0808 4.8045 0.0005 23 7 1.0929 2.5796 0.0001 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 4.2558 1.5053 0.0105 28 1 4.6733 3.9354 0.0008 29 1 3.6852 5.9413 -1.9358 30 1 3.3461 9.6563 -0.1190 31 1 2.2825 8.7089 1.8603 32 1 -0.1195 8.5537 3.2005 33 1 -0.2067 5.0261 1.0283 34 1 0.3367 5.7314 -0.5131 35 1 -0.7506 4.3220 -0.5134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243592950.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = 45.836081 kcal Electronic energy + Delta-G solvation = -19872.789331 eV Core-core repulsion = 16960.882368 eV Total energy + Delta-G solvation = -2911.906963 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.76857 -38.15443 -34.40289 -32.91532 -32.53510 -30.38805 -29.29277 -28.48801 -27.13942 -25.93546 -23.58906 -21.79609 -21.43936 -20.50652 -17.73403 -17.27975 -15.97211 -15.84789 -15.40673 -14.64622 -14.51653 -14.38484 -13.97653 -13.43599 -13.17864 -13.16669 -12.79616 -12.46868 -12.34539 -12.12857 -11.91119 -11.67466 -11.51203 -11.46392 -11.32508 -11.08202 -10.47022 -10.37616 -9.98925 -9.63134 -9.40417 -9.18099 -8.91816 -8.11049 -8.08166 -7.73555 -7.15712 -6.94268 -4.77418 1.45822 1.81120 1.84043 2.40808 2.56481 2.69971 2.92550 2.96580 3.12840 3.71426 4.21916 4.48159 4.94382 5.25272 5.36046 5.37717 5.40708 5.50612 5.62857 5.71932 5.91293 5.94813 6.16180 6.22868 6.32723 6.47006 6.56046 6.70056 6.77522 6.84329 6.88291 7.02632 7.19996 7.24623 7.36492 7.68741 7.93284 8.26938 8.34009 8.53649 8.57954 9.50075 9.84758 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.006563 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.857237 B = 4265.494467 C = 5547.663541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.105 6.105 3 C 0.098 3.902 4 C -0.156 4.156 5 C -0.068 4.068 6 C -0.022 4.022 7 C -0.236 4.236 8 C 0.132 3.868 9 N -0.577 5.577 10 C 0.081 3.919 11 C -0.207 4.207 12 C 0.148 3.852 13 C -0.433 4.433 14 H 0.081 0.919 15 C 0.079 3.921 16 N -0.775 5.775 17 Si 0.906 3.094 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.259 1.259 21 C 0.157 3.843 22 C -0.089 4.089 23 N -0.490 5.490 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.128 0.872 28 H 0.132 0.868 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.130 0.870 32 H 0.286 0.714 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 -8.527 -0.822 8.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.132 5.868 3 C -0.151 4.151 4 C -0.181 4.181 5 C -0.095 4.095 6 C -0.027 4.027 7 C -0.242 4.242 8 C -0.027 4.027 9 N -0.291 5.291 10 C -0.066 4.066 11 C -0.229 4.229 12 C 0.140 3.860 13 C -0.463 4.463 14 H 0.099 0.901 15 C -0.142 4.142 16 N -0.399 5.399 17 Si 0.730 3.270 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.182 1.182 21 C 0.016 3.984 22 C -0.147 4.147 23 N -0.203 5.203 24 H 0.104 0.896 25 H 0.111 0.889 26 H 0.105 0.895 27 H 0.146 0.854 28 H 0.150 0.850 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.541 -9.238 -1.469 9.370 hybrid contribution -0.651 0.793 1.622 1.919 sum -1.192 -8.445 0.153 8.530 Atomic orbital electron populations 1.23292 0.94040 1.05101 1.06889 1.85345 1.08055 1.00378 1.93002 1.22662 0.91973 0.97373 1.03071 1.21156 0.95737 0.96267 1.04973 1.21404 0.99374 0.92103 0.96638 1.19469 0.92271 0.94009 0.96999 1.19292 1.16011 0.90778 0.98164 1.22067 0.94589 0.90682 0.95333 1.67325 1.25858 1.05909 1.30027 1.21731 0.96341 0.97923 0.90621 1.21978 1.04367 0.96518 0.99995 1.17684 0.87037 0.91146 0.90119 1.19507 1.22414 0.97844 1.06560 0.90134 1.25995 0.94451 0.94167 0.99637 1.69729 1.23415 1.10394 1.36348 0.86292 0.78612 0.80776 0.81338 1.18977 1.19795 1.18234 1.21476 0.94757 0.88905 0.93252 1.20646 0.93071 0.96926 1.04009 1.67689 1.33003 1.04091 1.15523 0.89582 0.88917 0.89513 0.85437 0.85024 0.86261 0.86413 0.85258 0.90244 0.89220 0.90389 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.53 9.63 101.05 0.97 -0.56 16 2 S -0.10 -1.50 22.70 -107.50 -2.44 -3.94 16 3 C 0.10 1.72 6.98 -16.74 -0.12 1.60 16 4 C -0.16 -2.60 9.77 -39.62 -0.39 -2.99 16 5 C -0.07 -1.23 9.85 -39.28 -0.39 -1.62 16 6 C -0.02 -0.46 4.50 -104.71 -0.47 -0.93 16 7 C -0.24 -5.26 4.20 -104.04 -0.44 -5.70 16 8 C 0.13 2.91 10.93 -17.19 -0.19 2.72 16 9 N -0.58 -13.35 10.32 -13.35 -0.14 -13.49 16 10 C 0.08 1.85 11.08 -18.02 -0.20 1.65 16 11 C -0.21 -4.93 8.73 -39.13 -0.34 -5.27 16 12 C 0.15 3.55 5.06 -106.25 -0.54 3.01 16 13 C -0.43 -10.25 6.26 -37.89 -0.24 -10.49 16 14 H 0.08 1.96 7.16 -52.49 -0.38 1.58 16 15 C 0.08 1.77 5.25 -17.32 -0.09 1.68 16 16 N -0.77 -17.77 10.80 55.56 0.60 -17.17 16 17 Si 0.91 17.38 29.58 -169.99 -5.03 12.35 16 18 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 19 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 21 C 0.16 3.17 6.31 -82.11 -0.52 2.65 16 22 C -0.09 -1.76 8.71 36.01 0.31 -1.45 16 23 N -0.49 -9.38 9.02 -7.89 -0.07 -9.45 16 24 H 0.09 1.10 8.12 -51.92 -0.42 0.68 16 25 H 0.09 0.88 8.14 -51.91 -0.42 0.46 16 26 H 0.09 1.15 8.12 -51.92 -0.42 0.73 16 27 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 28 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 31 H 0.13 3.14 6.13 -52.49 -0.32 2.82 16 32 H 0.29 5.98 8.29 -40.82 -0.34 5.64 16 33 H 0.09 1.87 6.89 -51.93 -0.36 1.52 16 34 H 0.08 1.65 6.92 -51.93 -0.36 1.29 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 311.14 15.07 4.69 4.69 Total: -1.00 -25.59 311.14 -8.94 -34.53 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: -3.93 Total: 8.18 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.63 Total: -15.70 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.39 Total: -40.11 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.44 Total: -3.94 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -25.59 -8.94 -34.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592950.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.369 kcal (2) G-P(sol) polarization free energy of solvation -25.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds