Wall clock time and date at job start Tue Mar 31 2020 06:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81001 * 1 3 3 C 1.76204 * 99.99908 * 2 1 4 4 C 1.39474 * 119.53726 * 179.73040 * 3 2 1 5 5 C 1.36853 * 119.38393 * 179.75122 * 4 3 2 6 6 C 1.40377 * 118.49675 * 0.50697 * 5 4 3 7 7 C 1.47670 * 120.47800 * 179.71047 * 6 5 4 8 8 C 1.39444 * 120.79480 * 65.01865 * 7 6 5 9 9 N 1.31617 * 120.64123 * 180.02562 * 8 7 6 10 10 C 1.32268 * 122.52045 * 359.97438 * 9 8 7 11 11 C 1.36405 * 121.53787 * 0.02562 * 10 9 8 12 12 C 1.41161 * 119.11743 * 359.69771 * 11 10 9 13 13 C 1.40835 * 121.11556 * 180.28165 * 12 11 10 14 14 H 1.07993 * 120.00155 * 204.47600 * 13 12 11 15 15 C 1.40131 * 119.99815 * 24.47350 * 13 12 11 16 16 N 1.30714 * 120.00418 * 14.05359 * 15 13 12 17 17 Si 1.86799 * 119.99997 * 194.05254 * 15 13 12 18 18 H 1.48498 * 109.47506 * 94.97654 * 17 15 13 19 19 H 1.48503 * 109.47215 * 214.97606 * 17 15 13 20 20 H 1.48507 * 109.46946 * 334.97280 * 17 15 13 21 21 C 1.39670 * 119.05136 * 359.73403 * 6 5 4 22 22 C 1.50700 * 119.74957 * 179.97438 * 21 6 5 23 23 N 1.31702 * 120.51013 * 0.02562 * 21 6 5 24 24 H 1.08999 * 109.47394 * 60.00537 * 1 2 3 25 25 H 1.09005 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47566 * 299.99835 * 1 2 3 27 27 H 1.07998 * 120.30874 * 359.97438 * 4 3 2 28 28 H 1.08000 * 120.74869 * 180.24531 * 5 4 3 29 29 H 1.07994 * 119.67575 * 0.02562 * 8 7 6 30 30 H 1.07992 * 119.23123 * 179.97438 * 10 9 8 31 31 H 1.07992 * 120.44171 * 179.97438 * 11 10 9 32 32 H 0.96998 * 120.00406 * 180.02562 * 16 15 13 33 33 H 1.08996 * 109.46871 * 270.02140 * 22 21 6 34 34 H 1.09006 * 109.46897 * 30.02180 * 22 21 6 35 35 H 1.08998 * 109.47401 * 150.01885 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 6 3.4304 2.2017 0.0057 5 6 3.6644 3.5501 0.0005 6 6 2.5634 4.4210 0.0005 7 6 2.7655 5.8838 0.0014 8 6 3.3649 6.5223 -1.0837 9 7 3.5440 7.8262 -1.0795 10 6 3.1731 8.5917 -0.0666 11 6 2.5779 8.0675 1.0433 12 6 2.3480 6.6762 1.1071 13 6 1.7314 6.0912 2.2300 14 1 1.9051 5.0505 2.4605 15 6 0.8924 6.8595 3.0482 16 7 0.4609 8.0217 2.6340 17 14 0.3905 6.2227 4.7311 18 1 1.3084 6.7708 5.7618 19 1 -0.9999 6.6516 5.0282 20 1 0.4638 4.7395 4.7412 21 6 1.2740 3.8841 0.0000 22 6 0.0808 4.8045 0.0005 23 7 1.0929 2.5796 0.0001 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 4.2558 1.5053 0.0105 28 1 4.6733 3.9354 0.0008 29 1 3.6852 5.9413 -1.9358 30 1 3.3461 9.6563 -0.1190 31 1 2.2825 8.7089 1.8603 32 1 -0.1195 8.5537 3.2005 33 1 -0.2067 5.0261 1.0283 34 1 0.3367 5.7314 -0.5131 35 1 -0.7506 4.3220 -0.5134 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243592950.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:16 Heat of formation + Delta-G solvation = 33.914016 kcal Electronic energy + Delta-G solvation = -19873.306311 eV Core-core repulsion = 16960.882368 eV Total energy + Delta-G solvation = -2912.423943 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.083 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.26825 -39.83792 -36.14166 -34.48610 -33.97451 -32.13563 -30.81762 -29.61953 -28.71675 -27.63052 -25.12800 -23.47053 -23.00547 -22.12107 -19.49460 -18.57679 -17.57681 -17.38838 -16.92238 -16.35071 -16.14925 -15.65168 -15.40927 -14.84585 -14.53054 -14.41367 -14.36111 -14.16956 -13.97636 -13.47567 -13.40968 -13.21736 -13.05846 -13.02845 -12.86132 -12.70497 -12.03083 -11.76229 -11.54789 -11.30657 -10.87101 -10.65613 -10.34314 -9.89048 -9.79931 -9.43403 -8.76130 -8.33797 -6.56465 -0.00867 0.38008 0.62599 0.86979 0.97895 1.29807 1.34587 1.44952 1.50869 2.11777 2.71886 2.76888 3.52980 3.66182 3.93536 4.00367 4.09362 4.25690 4.35099 4.35630 4.41347 4.56453 4.68836 4.82914 4.84436 4.94234 4.97704 4.99615 5.12504 5.22071 5.29506 5.38506 5.48081 5.59375 5.72774 5.92321 6.16277 6.49050 6.76208 6.78656 6.88855 7.72138 8.16547 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.006563 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.857237 B = 4265.494467 C = 5547.663541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.076 6.076 3 C 0.084 3.916 4 C -0.152 4.152 5 C -0.067 4.067 6 C -0.049 4.049 7 C -0.231 4.231 8 C 0.123 3.877 9 N -0.589 5.589 10 C 0.077 3.923 11 C -0.226 4.226 12 C 0.127 3.873 13 C -0.446 4.446 14 H 0.068 0.932 15 C 0.049 3.951 16 N -0.797 5.797 17 Si 0.966 3.034 18 H -0.260 1.260 19 H -0.262 1.262 20 H -0.266 1.266 21 C 0.141 3.859 22 C -0.076 4.076 23 N -0.498 5.498 24 H 0.081 0.919 25 H 0.126 0.874 26 H 0.076 0.924 27 H 0.160 0.840 28 H 0.147 0.853 29 H 0.141 0.859 30 H 0.140 0.860 31 H 0.120 0.880 32 H 0.295 0.705 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.521 -10.611 -0.602 10.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.161 5.839 3 C -0.164 4.164 4 C -0.177 4.177 5 C -0.093 4.093 6 C -0.055 4.055 7 C -0.237 4.237 8 C -0.035 4.035 9 N -0.304 5.304 10 C -0.071 4.071 11 C -0.249 4.249 12 C 0.119 3.881 13 C -0.476 4.476 14 H 0.086 0.914 15 C -0.170 4.170 16 N -0.422 5.422 17 Si 0.787 3.213 18 H -0.184 1.184 19 H -0.186 1.186 20 H -0.191 1.191 21 C 0.001 3.999 22 C -0.134 4.134 23 N -0.212 5.212 24 H 0.100 0.900 25 H 0.144 0.856 26 H 0.095 0.905 27 H 0.177 0.823 28 H 0.165 0.835 29 H 0.159 0.841 30 H 0.157 0.843 31 H 0.138 0.862 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.454 -11.321 -1.265 11.400 hybrid contribution -0.679 1.285 1.491 2.082 sum -1.133 -10.036 0.226 10.102 Atomic orbital electron populations 1.23393 0.92649 1.07071 1.06179 1.85256 1.09548 0.96853 1.92223 1.23357 0.92270 0.99267 1.01539 1.21503 0.96498 0.96204 1.03532 1.21598 0.99394 0.92574 0.95760 1.19466 0.93302 0.93307 0.99385 1.19457 1.14778 0.91959 0.97483 1.22428 0.94452 0.90616 0.95962 1.67380 1.26387 1.06494 1.30109 1.22034 0.95793 0.99021 0.90208 1.21971 1.05768 0.96709 1.00421 1.17975 0.87601 0.91584 0.90952 1.19467 1.23338 0.97401 1.07366 0.91379 1.26604 0.94031 0.94213 1.02202 1.69752 1.23714 1.11158 1.37529 0.85406 0.78790 0.79547 0.77532 1.18432 1.18649 1.19058 1.21445 0.94621 0.89609 0.94201 1.20442 0.93889 0.96246 1.02784 1.67725 1.33752 1.03617 1.16097 0.90014 0.85602 0.90468 0.82268 0.83510 0.84138 0.84302 0.86212 0.89398 0.90902 0.92556 0.90965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.73 9.63 113.37 1.09 -1.64 16 2 S -0.08 -1.95 22.70 -56.49 -1.28 -3.24 16 3 C 0.08 2.80 6.98 84.87 0.59 3.39 16 4 C -0.15 -4.74 9.77 22.24 0.22 -4.52 16 5 C -0.07 -2.31 9.85 22.47 0.22 -2.09 16 6 C -0.05 -2.02 4.50 -19.92 -0.09 -2.10 16 7 C -0.23 -10.43 4.20 -19.49 -0.08 -10.52 16 8 C 0.12 5.42 10.93 85.02 0.93 6.35 16 9 N -0.59 -27.31 10.32 -196.16 -2.02 -29.33 16 10 C 0.08 3.55 11.08 84.20 0.93 4.49 16 11 C -0.23 -11.10 8.73 22.56 0.20 -10.90 16 12 C 0.13 6.24 5.06 -20.92 -0.11 6.13 16 13 C -0.45 -21.62 6.26 23.37 0.15 -21.48 16 14 H 0.07 3.40 7.16 -2.91 -0.02 3.38 16 15 C 0.05 2.22 5.25 85.32 0.45 2.67 16 16 N -0.80 -37.18 10.80 21.86 0.24 -36.94 16 17 Si 0.97 35.64 29.58 68.60 2.03 37.67 16 18 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 19 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 20 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 21 C 0.14 5.72 6.31 42.92 0.27 5.99 16 22 C -0.08 -3.08 8.71 71.24 0.62 -2.46 16 23 N -0.50 -18.59 9.02 -178.88 -1.61 -20.21 16 24 H 0.08 1.91 8.12 -2.40 -0.02 1.89 16 25 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.08 1.89 8.12 -2.40 -0.02 1.87 16 27 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 28 H 0.15 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.14 5.45 8.06 -2.91 -0.02 5.42 16 30 H 0.14 5.61 8.06 -2.91 -0.02 5.59 16 31 H 0.12 6.01 6.13 -2.91 -0.02 5.99 16 32 H 0.29 12.40 8.29 -92.71 -0.77 11.63 16 33 H 0.07 3.15 6.89 -2.39 -0.02 3.14 16 34 H 0.06 2.47 6.92 -2.38 -0.02 2.45 16 35 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -54.84 311.14 3.85 -50.99 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 1.11 Total: 27.74 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 5.39 Total: -26.69 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -3.40 Total: -86.48 kcal Atomic # 14 Polarization: 35.64 SS G_CDS: 2.03 Total: 37.67 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -1.28 Total: -3.24 kcal Total: -54.84 3.85 -50.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243592950.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.905 kcal (2) G-P(sol) polarization free energy of solvation -54.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds