Wall clock time and date at job start Tue Mar 31 2020 05:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21444 * 119.99988 * 2 1 4 4 C 1.41297 * 120.00050 * 179.97438 * 2 1 3 5 5 C 1.36798 * 125.22957 * 180.02562 * 4 2 1 6 6 C 1.38217 * 113.33037 * 179.97438 * 5 4 2 7 7 C 1.48433 * 122.76614 * 180.02562 * 6 5 4 8 8 C 1.39336 * 120.12237 * 359.71873 * 7 6 5 9 9 C 1.38008 * 119.87826 * 179.76741 * 8 7 6 10 10 C 1.38338 * 120.11733 * 0.51829 * 9 8 7 11 11 C 1.38294 * 120.24298 * 359.73789 * 10 9 8 12 12 C 1.50706 * 119.94290 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.46916 * 270.02476 * 12 11 10 14 14 H 1.08001 * 120.00436 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00041 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99921 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00273 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47217 * 89.99451 * 17 15 13 19 19 H 1.48494 * 109.47203 * 209.99573 * 17 15 13 20 20 H 1.48500 * 109.47036 * 329.99927 * 17 15 13 21 21 C 1.38043 * 120.11931 * 0.02562 * 11 10 9 22 22 C 1.36166 * 114.46106 * 359.97438 * 6 5 4 23 23 S 1.70565 * 110.83298 * 359.75140 * 22 6 5 24 24 H 1.09002 * 109.47152 * 89.99952 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00052 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00033 * 1 2 3 27 27 H 1.07998 * 123.33573 * 359.97438 * 5 4 2 28 28 H 1.08002 * 120.06198 * 0.03035 * 8 7 6 29 29 H 1.08001 * 119.93783 * 180.25355 * 9 8 7 30 30 H 1.08005 * 119.87947 * 179.72281 * 10 9 8 31 31 H 1.09002 * 109.46899 * 30.01891 * 12 11 10 32 32 H 1.09000 * 109.47487 * 150.01702 * 12 11 10 33 33 H 0.96995 * 120.00510 * 180.02562 * 16 15 13 34 34 H 1.08006 * 120.05753 * 179.97438 * 21 11 10 35 35 H 1.07995 * 124.58167 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1142 1.0517 0.0000 4 6 2.2135 -1.2237 0.0005 5 6 3.5758 -1.3483 0.0011 6 6 4.0053 -2.6621 0.0021 7 6 5.4412 -3.0379 0.0034 8 6 6.4228 -2.0490 -0.0022 9 6 7.7564 -2.4040 0.0039 10 6 8.1194 -3.7390 0.0048 11 6 7.1492 -4.7245 0.0050 12 6 7.5522 -6.1767 0.0055 13 6 7.6871 -6.6609 -1.4152 14 1 7.4994 -5.9849 -2.2363 15 6 8.0492 -7.9673 -1.6668 16 7 8.2773 -8.7907 -0.6670 17 14 8.2158 -8.5678 -3.4278 18 1 9.6092 -8.3529 -3.8944 19 1 7.8907 -10.0154 -3.4900 20 1 7.2800 -7.8124 -4.2990 21 6 5.8123 -4.3806 0.0039 22 6 3.0023 -3.5831 0.0030 23 16 1.4773 -2.8193 0.0094 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 4.2491 -0.5039 0.0008 28 1 6.1405 -1.0065 -0.0071 29 1 8.5181 -1.6383 0.0036 30 1 9.1642 -4.0125 0.0050 31 1 8.5068 -6.2887 0.5196 32 1 6.7917 -6.7648 0.5192 33 1 8.5324 -9.7096 -0.8439 34 1 5.0555 -5.1511 0.0037 35 1 3.1523 -4.6526 0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244626946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:45 Heat of formation + Delta-G solvation = 2.474367 kcal Electronic energy + Delta-G solvation = -18549.666020 eV Core-core repulsion = 15603.586001 eV Total energy + Delta-G solvation = -2946.080020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.91004 -39.02082 -37.04551 -33.48243 -31.94625 -31.27580 -30.45240 -28.55170 -27.20921 -25.08189 -23.35069 -22.45223 -20.92351 -19.91219 -18.85564 -17.46566 -16.50449 -16.30392 -15.58973 -15.34944 -15.07135 -14.70779 -14.39707 -14.13096 -13.56273 -13.40270 -13.02060 -12.78383 -12.60103 -12.43860 -12.33613 -12.16814 -11.73039 -11.37978 -11.23889 -11.02998 -10.78876 -10.54046 -10.37533 -10.10100 -9.66072 -9.51963 -9.24118 -8.94852 -8.47490 -8.02976 -7.61232 -6.09482 -4.13614 0.12021 1.35565 1.37318 1.73857 2.03805 2.36551 2.99493 3.26917 3.33452 3.37579 3.96092 4.34953 4.53555 4.75604 4.92784 5.02043 5.07984 5.09538 5.15411 5.25473 5.45935 5.51566 5.55433 5.70218 5.90501 5.97772 6.00301 6.16749 6.33408 6.52554 6.67467 6.99692 7.09028 7.11825 7.29301 7.43671 7.62721 7.76932 7.86371 8.25876 8.91787 9.50640 11.00394 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.003577 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.541127 B = 7825.541227 C = 8512.682691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.424 3.576 3 O -0.463 6.463 4 C -0.322 4.322 5 C -0.024 4.024 6 C -0.069 4.069 7 C -0.042 4.042 8 C -0.135 4.135 9 C -0.120 4.120 10 C -0.118 4.118 11 C -0.032 4.032 12 C 0.047 3.953 13 C -0.513 4.513 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.895 3.105 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C -0.108 4.108 22 C -0.216 4.216 23 S 0.224 5.776 24 H 0.098 0.902 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.154 0.846 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.030 0.970 32 H 0.029 0.971 33 H 0.262 0.738 34 H 0.118 0.882 35 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.208 13.265 2.596 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.304 3.696 3 O -0.342 6.342 4 C -0.439 4.439 5 C -0.058 4.058 6 C -0.081 4.081 7 C -0.044 4.044 8 C -0.154 4.154 9 C -0.138 4.138 10 C -0.136 4.136 11 C -0.032 4.032 12 C 0.011 3.989 13 C -0.551 4.551 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.722 3.278 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.127 4.127 22 C -0.353 4.353 23 S 0.494 5.506 24 H 0.117 0.883 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.171 0.829 28 H 0.131 0.869 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.136 0.864 35 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -15.417 13.068 2.648 20.383 hybrid contribution 1.712 -0.212 -1.023 2.006 sum -13.705 12.857 1.624 18.861 Atomic orbital electron populations 1.22258 0.93876 1.04773 1.04915 1.20099 0.91402 0.86521 0.71624 1.90608 1.72055 1.33679 1.37846 1.23968 0.98344 0.99491 1.22102 1.20990 0.93732 0.97471 0.93608 1.18043 0.93948 0.91584 1.04479 1.18269 0.89398 0.93781 1.02975 1.20896 0.92735 0.97944 1.03820 1.20974 0.95466 0.96250 1.01130 1.21198 0.99818 0.92154 1.00421 1.20627 0.92062 0.98619 0.91869 1.18368 0.97464 0.85287 0.97813 1.21052 1.46922 0.95716 0.91428 0.92447 1.25009 0.95247 0.96756 0.97268 1.69951 1.46914 1.05674 1.30715 0.86540 0.78568 0.77916 0.84731 1.20528 1.21125 1.19790 1.21055 0.96495 0.94014 1.01098 1.25974 0.97135 1.05368 1.06864 1.82703 1.06235 0.94649 1.66991 0.88313 0.89075 0.89993 0.82873 0.86902 0.86690 0.86239 0.95187 0.95323 0.92789 0.86393 0.80592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.42 9.95 36.01 0.36 -1.06 16 2 C 0.42 4.78 7.05 -33.15 -0.23 4.54 16 3 O -0.46 -6.76 17.45 5.41 0.09 -6.66 16 4 C -0.32 -3.77 6.20 -38.94 -0.24 -4.01 16 5 C -0.02 -0.32 9.26 -40.11 -0.37 -0.70 16 6 C -0.07 -0.99 5.80 -106.45 -0.62 -1.61 16 7 C -0.04 -0.71 5.88 -104.89 -0.62 -1.33 16 8 C -0.14 -2.15 9.49 -39.26 -0.37 -2.52 16 9 C -0.12 -1.96 10.03 -39.63 -0.40 -2.36 16 10 C -0.12 -2.24 9.69 -39.52 -0.38 -2.62 16 11 C -0.03 -0.67 5.06 -104.67 -0.53 -1.20 16 12 C 0.05 1.19 5.10 -29.03 -0.15 1.04 16 13 C -0.51 -14.11 9.09 -34.44 -0.31 -14.42 16 14 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 17 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.11 -2.06 9.13 -39.26 -0.36 -2.42 16 22 C -0.22 -2.70 10.28 29.99 0.31 -2.39 16 23 S 0.22 2.15 21.80 -107.50 -2.34 -0.19 16 24 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.08 0.46 7.24 -51.93 -0.38 0.08 16 27 H 0.15 1.98 6.69 -52.49 -0.35 1.63 16 28 H 0.11 1.52 6.57 -52.49 -0.34 1.17 16 29 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 30 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 31 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 32 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.12 2.14 6.60 -52.48 -0.35 1.80 16 35 H 0.18 2.08 6.79 -52.49 -0.36 1.73 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -31.09 319.39 -9.58 -40.67 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: -3.85 Total: -0.11 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: -4.01 Total: -29.51 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.74 Total: -25.23 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: 0.09 Total: -6.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.34 Total: -0.19 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.09 -9.58 -40.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244626946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.149 kcal (2) G-P(sol) polarization free energy of solvation -31.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds