Wall clock time and date at job start Tue Mar 31 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21444 * 119.99988 * 2 1 4 4 C 1.41297 * 120.00050 * 179.97438 * 2 1 3 5 5 C 1.36798 * 125.22957 * 180.02562 * 4 2 1 6 6 C 1.38217 * 113.33037 * 179.97438 * 5 4 2 7 7 C 1.48433 * 122.76614 * 180.02562 * 6 5 4 8 8 C 1.39336 * 120.12237 * 359.71873 * 7 6 5 9 9 C 1.38008 * 119.87826 * 179.76741 * 8 7 6 10 10 C 1.38338 * 120.11733 * 0.51829 * 9 8 7 11 11 C 1.38294 * 120.24298 * 359.73789 * 10 9 8 12 12 C 1.50706 * 119.94290 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.46916 * 270.02476 * 12 11 10 14 14 H 1.08001 * 120.00436 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00041 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99921 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00273 * 179.97438 * 15 13 12 18 18 H 1.48508 * 109.47217 * 89.99451 * 17 15 13 19 19 H 1.48494 * 109.47203 * 209.99573 * 17 15 13 20 20 H 1.48500 * 109.47036 * 329.99927 * 17 15 13 21 21 C 1.38043 * 120.11931 * 0.02562 * 11 10 9 22 22 C 1.36166 * 114.46106 * 359.97438 * 6 5 4 23 23 S 1.70565 * 110.83298 * 359.75140 * 22 6 5 24 24 H 1.09002 * 109.47152 * 89.99952 * 1 2 3 25 25 H 1.09001 * 109.46980 * 330.00052 * 1 2 3 26 26 H 1.09004 * 109.47113 * 210.00033 * 1 2 3 27 27 H 1.07998 * 123.33573 * 359.97438 * 5 4 2 28 28 H 1.08002 * 120.06198 * 0.03035 * 8 7 6 29 29 H 1.08001 * 119.93783 * 180.25355 * 9 8 7 30 30 H 1.08005 * 119.87947 * 179.72281 * 10 9 8 31 31 H 1.09002 * 109.46899 * 30.01891 * 12 11 10 32 32 H 1.09000 * 109.47487 * 150.01702 * 12 11 10 33 33 H 0.96995 * 120.00510 * 180.02562 * 16 15 13 34 34 H 1.08006 * 120.05753 * 179.97438 * 21 11 10 35 35 H 1.07995 * 124.58167 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1142 1.0517 0.0000 4 6 2.2135 -1.2237 0.0005 5 6 3.5758 -1.3483 0.0011 6 6 4.0053 -2.6621 0.0021 7 6 5.4412 -3.0379 0.0034 8 6 6.4228 -2.0490 -0.0022 9 6 7.7564 -2.4040 0.0039 10 6 8.1194 -3.7390 0.0048 11 6 7.1492 -4.7245 0.0050 12 6 7.5522 -6.1767 0.0055 13 6 7.6871 -6.6609 -1.4152 14 1 7.4994 -5.9849 -2.2363 15 6 8.0492 -7.9673 -1.6668 16 7 8.2773 -8.7907 -0.6670 17 14 8.2158 -8.5678 -3.4278 18 1 9.6092 -8.3529 -3.8944 19 1 7.8907 -10.0154 -3.4900 20 1 7.2800 -7.8124 -4.2990 21 6 5.8123 -4.3806 0.0039 22 6 3.0023 -3.5831 0.0030 23 16 1.4773 -2.8193 0.0094 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 0.8900 0.5138 26 1 -0.3633 -0.8900 0.5139 27 1 4.2491 -0.5039 0.0008 28 1 6.1405 -1.0065 -0.0071 29 1 8.5181 -1.6383 0.0036 30 1 9.1642 -4.0125 0.0050 31 1 8.5068 -6.2887 0.5196 32 1 6.7917 -6.7648 0.5192 33 1 8.5324 -9.7096 -0.8439 34 1 5.0555 -5.1511 0.0037 35 1 3.1523 -4.6526 0.0034 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244626946.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:44 Heat of formation + Delta-G solvation = -13.269095 kcal Electronic energy + Delta-G solvation = -18550.348708 eV Core-core repulsion = 15603.586001 eV Total energy + Delta-G solvation = -2946.762707 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 286.077 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92249 -40.22906 -38.19191 -35.43651 -33.17701 -32.81754 -31.45345 -29.54666 -29.00780 -26.19185 -25.18580 -23.64753 -22.33063 -20.93986 -19.98968 -18.57216 -18.38152 -17.58745 -16.77973 -16.58131 -16.19184 -15.92435 -15.81190 -15.41796 -14.74707 -14.64937 -14.32849 -14.18198 -13.85756 -13.53351 -13.29510 -13.24121 -13.08802 -13.02288 -12.80295 -12.61223 -12.36130 -12.13983 -11.78502 -11.58963 -11.35390 -10.98727 -10.62624 -10.43513 -9.86990 -9.53399 -8.81273 -8.22261 -6.35626 -0.82588 0.13575 0.48329 0.61171 0.80212 1.33893 1.39002 1.39491 1.51030 1.93856 2.38556 3.08324 3.08624 3.17565 3.82599 3.92022 4.03407 4.09856 4.19689 4.32680 4.42151 4.45529 4.56476 4.61206 4.65724 4.81374 4.97749 5.08259 5.15484 5.20736 5.22863 5.33583 5.37215 5.62151 5.69442 5.75240 6.04264 6.09149 6.22936 6.46605 6.76839 7.33105 8.87117 Molecular weight = 286.08amu Principal moments of inertia in cm(-1) A = 0.023240 B = 0.003577 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.541127 B = 7825.541227 C = 8512.682691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.422 3.578 3 O -0.504 6.504 4 C -0.336 4.336 5 C -0.041 4.041 6 C -0.094 4.094 7 C -0.036 4.036 8 C -0.133 4.133 9 C -0.109 4.109 10 C -0.136 4.136 11 C -0.061 4.061 12 C 0.057 3.943 13 C -0.529 4.529 14 H 0.053 0.947 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.964 3.036 18 H -0.272 1.272 19 H -0.278 1.278 20 H -0.266 1.266 21 C -0.124 4.124 22 C -0.233 4.233 23 S 0.330 5.670 24 H 0.119 0.881 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.151 0.849 28 H 0.142 0.858 29 H 0.150 0.850 30 H 0.116 0.884 31 H 0.004 0.996 32 H 0.004 0.996 33 H 0.266 0.734 34 H 0.116 0.884 35 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.596 14.687 1.576 22.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.304 3.696 3 O -0.385 6.385 4 C -0.454 4.454 5 C -0.075 4.075 6 C -0.106 4.106 7 C -0.038 4.038 8 C -0.152 4.152 9 C -0.127 4.127 10 C -0.155 4.155 11 C -0.061 4.061 12 C 0.020 3.980 13 C -0.567 4.567 14 H 0.071 0.929 15 C -0.192 4.192 16 N -0.569 5.569 17 Si 0.789 3.211 18 H -0.197 1.197 19 H -0.203 1.203 20 H -0.191 1.191 21 C -0.142 4.142 22 C -0.372 4.372 23 S 0.601 5.399 24 H 0.137 0.863 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.168 0.832 28 H 0.160 0.840 29 H 0.168 0.832 30 H 0.134 0.866 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.075 0.925 34 H 0.134 0.866 35 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -17.822 14.489 1.633 23.026 hybrid contribution 2.289 -0.609 -0.651 2.456 sum -15.533 13.879 0.982 20.854 Atomic orbital electron populations 1.22309 0.90266 1.06192 1.06585 1.20736 0.93276 0.85545 0.69993 1.90597 1.73216 1.34895 1.39795 1.24312 0.98295 1.01400 1.21406 1.20938 0.94693 0.96801 0.95051 1.17937 0.92885 0.92571 1.07226 1.18498 0.91428 0.92802 1.01039 1.21305 0.92363 0.99270 1.02222 1.21288 0.96672 0.95552 0.99205 1.21235 0.99240 0.93230 1.01751 1.20336 0.93761 0.96687 0.95275 1.18098 0.95331 0.88163 0.96359 1.21352 1.46874 0.96083 0.92364 0.92896 1.25906 0.94718 0.96873 1.01732 1.70071 1.47706 1.06093 1.33025 0.85457 0.78827 0.77523 0.79331 1.19734 1.20332 1.19082 1.21033 0.95491 0.95395 1.02315 1.26279 0.99173 1.05740 1.05974 1.82301 1.02622 0.91492 1.63449 0.86281 0.88187 0.88091 0.83168 0.83992 0.83232 0.86617 0.97769 0.97736 0.92504 0.86633 0.80513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 9.95 71.24 0.71 -1.33 16 2 C 0.42 8.52 7.05 26.44 0.19 8.71 16 3 O -0.50 -14.10 17.45 -3.54 -0.06 -14.16 16 4 C -0.34 -7.08 6.20 22.68 0.14 -6.94 16 5 C -0.04 -1.05 9.26 21.93 0.20 -0.85 16 6 C -0.09 -2.62 5.80 -21.05 -0.12 -2.75 16 7 C -0.04 -1.20 5.88 -20.04 -0.12 -1.32 16 8 C -0.13 -4.07 9.49 22.48 0.21 -3.86 16 9 C -0.11 -3.46 10.03 22.24 0.22 -3.23 16 10 C -0.14 -5.34 9.69 22.31 0.22 -5.12 16 11 C -0.06 -2.70 5.06 -19.90 -0.10 -2.80 16 12 C 0.06 3.08 5.10 29.10 0.15 3.23 16 13 C -0.53 -30.24 9.09 25.60 0.23 -30.01 16 14 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 15 C 0.01 0.34 5.46 84.66 0.46 0.80 16 16 N -0.93 -55.70 13.29 21.45 0.28 -55.42 16 17 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 C -0.12 -4.89 9.13 22.48 0.21 -4.68 16 22 C -0.23 -5.50 10.28 67.34 0.69 -4.81 16 23 S 0.33 5.21 21.80 -56.49 -1.23 3.98 16 24 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 0.65 7.24 -2.38 -0.02 0.63 16 27 H 0.15 3.75 6.69 -2.91 -0.02 3.73 16 28 H 0.14 3.50 6.57 -2.91 -0.02 3.48 16 29 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 31 H 0.00 0.23 8.08 -2.39 -0.02 0.21 16 32 H 0.00 0.25 8.08 -2.39 -0.02 0.23 16 33 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.12 4.44 6.60 -2.91 -0.02 4.42 16 35 H 0.18 4.07 6.79 -2.91 -0.02 4.05 16 Total: -1.00 -70.20 319.39 5.42 -64.78 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.11 Total: 9.63 kcal Atomic # 6 Polarization: -58.23 SS G_CDS: 3.29 Total: -54.94 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: 0.28 Total: -55.42 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.06 Total: -14.16 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -1.23 Total: 3.98 kcal Total: -70.20 5.42 -64.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244626946.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.512 kcal (2) G-P(sol) polarization free energy of solvation -70.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds